Strain Fitness in Variovorax sp. SCN45 around GFF1641

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1640 and GFF1641 overlap by 1 nucleotidesGFF1641 and GFF1642 are separated by 63 nucleotidesGFF1642 and GFF1643 are separated by 4 nucleotides GFF1640 - Polyketide synthase modules and related proteins, at 271,193 to 278,275 GFF1640 GFF1641 - Polyketide synthase modules and related proteins, at 278,275 to 283,587 GFF1641 GFF1642 - FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis, at 283,651 to 284,391 GFF1642 GFF1643 - MbtH-like NRPS chaperone, at 284,396 to 284,644 GFF1643 Position (kb) 278 279 280 281 282 283 284Strain fitness (log2 ratio) -2 -1 0 1 2at 277.593 kb on + strandat 277.755 kb on + strandat 277.756 kb on - strandat 277.756 kb on - strandat 277.869 kb on + strandat 278.074 kb on - strandat 278.074 kb on - strandat 278.637 kb on - strandat 278.744 kb on + strandat 278.744 kb on + strandat 278.744 kb on + strandat 278.744 kb on + strandat 278.745 kb on - strandat 278.745 kb on - strandat 278.745 kb on - strandat 278.819 kb on + strand, within GFF1641at 278.820 kb on - strand, within GFF1641at 278.820 kb on - strand, within GFF1641at 278.820 kb on - strand, within GFF1641at 278.967 kb on - strand, within GFF1641at 279.086 kb on + strand, within GFF1641at 279.116 kb on + strand, within GFF1641at 279.116 kb on + strand, within GFF1641at 279.117 kb on - strand, within GFF1641at 279.209 kb on + strand, within GFF1641at 279.209 kb on + strand, within GFF1641at 279.210 kb on - strand, within GFF1641at 279.210 kb on - strand, within GFF1641at 279.425 kb on + strand, within GFF1641at 279.704 kb on + strand, within GFF1641at 279.704 kb on + strand, within GFF1641at 279.704 kb on + strand, within GFF1641at 279.704 kb on + strand, within GFF1641at 279.704 kb on + strand, within GFF1641at 279.704 kb on + strand, within GFF1641at 279.705 kb on - strand, within GFF1641at 279.705 kb on - strand, within GFF1641at 279.705 kb on - strand, within GFF1641at 279.705 kb on - strand, within GFF1641at 279.714 kb on - strand, within GFF1641at 279.714 kb on - strand, within GFF1641at 279.714 kb on - strand, within GFF1641at 279.917 kb on + strand, within GFF1641at 279.918 kb on - strand, within GFF1641at 279.918 kb on - strand, within GFF1641at 279.918 kb on - strand, within GFF1641at 280.006 kb on + strand, within GFF1641at 280.006 kb on + strand, within GFF1641at 280.006 kb on + strand, within GFF1641at 280.007 kb on - strand, within GFF1641at 280.065 kb on - strand, within GFF1641at 280.277 kb on + strand, within GFF1641at 280.278 kb on - strand, within GFF1641at 280.328 kb on + strand, within GFF1641at 280.329 kb on - strand, within GFF1641at 280.329 kb on - strand, within GFF1641at 280.329 kb on - strand, within GFF1641at 280.872 kb on - strand, within GFF1641at 280.949 kb on + strand, within GFF1641at 281.007 kb on - strand, within GFF1641at 281.897 kb on + strand, within GFF1641at 281.897 kb on + strand, within GFF1641at 281.897 kb on + strand, within GFF1641at 281.897 kb on + strand, within GFF1641at 281.897 kb on + strand, within GFF1641at 281.897 kb on + strand, within GFF1641at 281.897 kb on + strand, within GFF1641at 281.898 kb on - strand, within GFF1641at 281.898 kb on - strand, within GFF1641at 281.898 kb on - strand, within GFF1641at 281.898 kb on - strand, within GFF1641at 281.898 kb on - strand, within GFF1641at 282.219 kb on - strand, within GFF1641at 282.255 kb on + strand, within GFF1641at 282.255 kb on + strand, within GFF1641at 282.256 kb on - strand, within GFF1641at 282.256 kb on - strand, within GFF1641at 282.270 kb on - strand, within GFF1641at 282.371 kb on + strand, within GFF1641at 282.626 kb on + strand, within GFF1641at 282.875 kb on + strand, within GFF1641at 282.876 kb on - strand, within GFF1641at 283.085 kb on + strandat 283.085 kb on + strandat 283.085 kb on + strandat 283.085 kb on + strandat 283.085 kb on + strandat 283.085 kb on + strandat 283.086 kb on - strandat 283.086 kb on - strandat 283.340 kb on + strandat 283.367 kb on + strandat 283.367 kb on + strandat 283.367 kb on + strandat 283.368 kb on - strandat 283.368 kb on - strandat 284.333 kb on + strandat 284.333 kb on + strandat 284.333 kb on + strandat 284.333 kb on + strandat 284.333 kb on + strandat 284.333 kb on + strandat 284.333 kb on + strandat 284.334 kb on - strandat 284.334 kb on - strandat 284.334 kb on - strandat 284.334 kb on - strandat 284.334 kb on - strandat 284.334 kb on - strandat 284.334 kb on - strandat 284.486 kb on + strand, within GFF1643at 284.486 kb on + strand, within GFF1643at 284.486 kb on + strand, within GFF1643at 284.486 kb on + strand, within GFF1643at 284.486 kb on + strand, within GFF1643at 284.487 kb on - strand, within GFF1643at 284.487 kb on - strand, within GFF1643at 284.490 kb on + strand, within GFF1643at 284.490 kb on + strand, within GFF1643at 284.491 kb on - strand, within GFF1643at 284.491 kb on - strand, within GFF1643at 284.577 kb on + strand, within GFF1643at 284.577 kb on + strand, within GFF1643at 284.577 kb on + strand, within GFF1643

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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277,593 + -0.0
277,755 + -0.3
277,756 - -0.4
277,756 - -1.2
277,869 + -0.8
278,074 - +2.2
278,074 - -0.3
278,637 - -0.4
278,744 + +0.8
278,744 + -0.1
278,744 + -1.4
278,744 + -1.0
278,745 - -1.6
278,745 - +0.0
278,745 - -0.1
278,819 + GFF1641 0.10 -0.2
278,820 - GFF1641 0.10 +0.1
278,820 - GFF1641 0.10 +0.1
278,820 - GFF1641 0.10 -1.0
278,967 - GFF1641 0.13 -1.0
279,086 + GFF1641 0.15 -1.6
279,116 + GFF1641 0.16 +1.0
279,116 + GFF1641 0.16 -0.5
279,117 - GFF1641 0.16 +0.3
279,209 + GFF1641 0.18 -1.0
279,209 + GFF1641 0.18 +0.0
279,210 - GFF1641 0.18 +0.1
279,210 - GFF1641 0.18 +0.5
279,425 + GFF1641 0.22 -0.5
279,704 + GFF1641 0.27 -0.2
279,704 + GFF1641 0.27 +0.8
279,704 + GFF1641 0.27 +0.5
279,704 + GFF1641 0.27 -0.3
279,704 + GFF1641 0.27 +0.5
279,704 + GFF1641 0.27 +0.2
279,705 - GFF1641 0.27 -1.5
279,705 - GFF1641 0.27 +2.0
279,705 - GFF1641 0.27 +0.2
279,705 - GFF1641 0.27 +0.0
279,714 - GFF1641 0.27 +1.4
279,714 - GFF1641 0.27 -0.9
279,714 - GFF1641 0.27 +0.9
279,917 + GFF1641 0.31 +0.4
279,918 - GFF1641 0.31 -2.0
279,918 - GFF1641 0.31 +0.1
279,918 - GFF1641 0.31 -0.3
280,006 + GFF1641 0.33 -1.2
280,006 + GFF1641 0.33 +0.1
280,006 + GFF1641 0.33 +0.4
280,007 - GFF1641 0.33 -1.3
280,065 - GFF1641 0.34 -0.6
280,277 + GFF1641 0.38 -0.2
280,278 - GFF1641 0.38 +2.2
280,328 + GFF1641 0.39 -0.6
280,329 - GFF1641 0.39 -0.2
280,329 - GFF1641 0.39 -2.3
280,329 - GFF1641 0.39 +1.4
280,872 - GFF1641 0.49 -0.1
280,949 + GFF1641 0.50 -0.5
281,007 - GFF1641 0.51 +0.4
281,897 + GFF1641 0.68 -0.2
281,897 + GFF1641 0.68 -0.7
281,897 + GFF1641 0.68 +1.1
281,897 + GFF1641 0.68 +0.3
281,897 + GFF1641 0.68 -0.5
281,897 + GFF1641 0.68 +1.6
281,897 + GFF1641 0.68 +0.1
281,898 - GFF1641 0.68 -0.1
281,898 - GFF1641 0.68 -1.4
281,898 - GFF1641 0.68 -0.2
281,898 - GFF1641 0.68 -0.3
281,898 - GFF1641 0.68 +0.7
282,219 - GFF1641 0.74 -0.2
282,255 + GFF1641 0.75 -0.6
282,255 + GFF1641 0.75 -0.0
282,256 - GFF1641 0.75 +1.2
282,256 - GFF1641 0.75 -0.4
282,270 - GFF1641 0.75 -1.1
282,371 + GFF1641 0.77 +0.6
282,626 + GFF1641 0.82 +1.5
282,875 + GFF1641 0.87 -0.0
282,876 - GFF1641 0.87 +0.4
283,085 + -0.3
283,085 + +0.8
283,085 + -0.0
283,085 + +0.1
283,085 + +2.0
283,085 + -0.9
283,086 - +0.0
283,086 - +1.0
283,340 + -0.4
283,367 + -1.6
283,367 + -0.0
283,367 + +0.8
283,368 - +0.5
283,368 - -0.4
284,333 + -1.3
284,333 + +1.6
284,333 + +1.6
284,333 + -0.2
284,333 + -0.4
284,333 + +0.4
284,333 + -0.4
284,334 - +0.6
284,334 - +0.1
284,334 - -0.5
284,334 - +0.5
284,334 - -1.3
284,334 - -0.8
284,334 - +0.3
284,486 + GFF1643 0.36 -1.4
284,486 + GFF1643 0.36 -0.3
284,486 + GFF1643 0.36 +0.4
284,486 + GFF1643 0.36 -1.2
284,486 + GFF1643 0.36 +0.2
284,487 - GFF1643 0.37 +0.8
284,487 - GFF1643 0.37 +0.1
284,490 + GFF1643 0.38 -1.3
284,490 + GFF1643 0.38 +0.3
284,491 - GFF1643 0.38 -1.0
284,491 - GFF1643 0.38 +0.2
284,577 + GFF1643 0.73 -0.2
284,577 + GFF1643 0.73 -0.4
284,577 + GFF1643 0.73 -0.3

Or see this region's nucleotide sequence