Strain Fitness in Variovorax sp. SCN45 around GFF1531

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
127,456	+				-0.4
127,457	-				-0.9
127,463	-				-0.7
127,463	-				-0.3
127,578	+				+0.0
127,579	-				-1.4
128,048	+		GFF1530	0.61	+0.6
128,049	-		GFF1530	0.62	+0.3
128,423	+				-2.8
128,423	+				-1.1
128,423	+				+0.3
128,423	+				+0.3
128,424	-				-0.9
128,424	-				+0.8
128,424	-				-0.6
128,424	-				+0.3
128,694	-		GFF1531	0.19	+0.4
128,888	+		GFF1531	0.32	+1.2
128,888	+		GFF1531	0.32	+0.0
129,074	+		GFF1531	0.45	-0.7
129,074	+		GFF1531	0.45	-0.0
129,161	-		GFF1531	0.51	+0.6
129,209	+		GFF1531	0.54	-0.5
129,209	+		GFF1531	0.54	-0.0
129,377	+		GFF1531	0.66	-0.9
129,377	+		GFF1531	0.66	-0.7
129,377	+		GFF1531	0.66	+1.3
129,378	-		GFF1531	0.66	-0.9
129,378	-		GFF1531	0.66	+0.3
129,378	-		GFF1531	0.66	-0.5
129,378	-		GFF1531	0.66	+0.2
129,458	+		GFF1531	0.71	-1.0
129,458	+		GFF1531	0.71	-1.7
129,650	+		GFF1531	0.84	-1.3
129,651	-		GFF1531	0.84	+0.9
129,651	-		GFF1531	0.84	-0.4
129,651	-		GFF1531	0.84	-2.6
129,651	-		GFF1531	0.84	-1.4
129,904	-				+0.4
129,904	-				+0.3
129,904	-				+1.1
129,904	-				+0.2
129,952	-				-0.5
130,266	+		GFF1532	0.31	-1.1
130,266	+		GFF1532	0.31	+0.1
130,267	-		GFF1532	0.31	-0.0
130,465	-		GFF1532	0.51	+1.5
130,465	-		GFF1532	0.51	+1.9
130,465	-		GFF1532	0.51	+0.2
130,465	-		GFF1532	0.51	-1.1
130,494	+		GFF1532	0.54	+0.3
130,495	-		GFF1532	0.54	+0.1