Strain Fitness in Variovorax sp. SCN45 around GFF1176

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1174 and GFF1175 are separated by 63 nucleotidesGFF1175 and GFF1176 overlap by 4 nucleotidesGFF1176 and GFF1177 are separated by 100 nucleotides GFF1174 - Transcriptional regulator, IclR family, at 490,561 to 491,331 GFF1174 GFF1175 - Two-component system response regulator QseB, at 491,395 to 492,054 GFF1175 GFF1176 - Sensory histidine kinase QseC, at 492,051 to 493,379 GFF1176 GFF1177 - Serine protease, at 493,480 to 494,967 GFF1177 Position (kb) 492 493 494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 491.140 kb on + strand, within GFF1174at 491.140 kb on + strand, within GFF1174at 491.140 kb on + strand, within GFF1174at 491.141 kb on - strand, within GFF1174at 491.254 kb on + strand, within GFF1174at 491.291 kb on + strandat 491.292 kb on - strandat 491.354 kb on - strandat 491.411 kb on + strandat 491.411 kb on + strandat 491.412 kb on - strandat 491.467 kb on + strand, within GFF1175at 491.467 kb on + strand, within GFF1175at 491.468 kb on - strand, within GFF1175at 491.527 kb on + strand, within GFF1175at 491.527 kb on + strand, within GFF1175at 491.527 kb on + strand, within GFF1175at 491.528 kb on - strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.657 kb on + strand, within GFF1175at 491.658 kb on - strand, within GFF1175at 491.658 kb on - strand, within GFF1175at 491.658 kb on - strand, within GFF1175at 491.658 kb on - strand, within GFF1175at 491.658 kb on - strand, within GFF1175at 491.686 kb on + strand, within GFF1175at 491.686 kb on + strand, within GFF1175at 491.686 kb on + strand, within GFF1175at 491.687 kb on - strand, within GFF1175at 491.687 kb on - strand, within GFF1175at 491.687 kb on - strand, within GFF1175at 491.701 kb on + strand, within GFF1175at 491.701 kb on + strand, within GFF1175at 491.773 kb on + strand, within GFF1175at 491.773 kb on + strand, within GFF1175at 491.774 kb on - strand, within GFF1175at 491.774 kb on - strand, within GFF1175at 491.774 kb on - strand, within GFF1175at 491.774 kb on - strand, within GFF1175at 491.929 kb on + strand, within GFF1175at 491.929 kb on + strand, within GFF1175at 491.930 kb on - strand, within GFF1175at 491.930 kb on - strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.971 kb on + strand, within GFF1175at 491.972 kb on - strand, within GFF1175at 491.972 kb on - strand, within GFF1175at 491.972 kb on - strand, within GFF1175at 491.972 kb on - strand, within GFF1175at 492.034 kb on + strandat 492.034 kb on + strandat 492.034 kb on + strandat 492.034 kb on + strandat 492.034 kb on + strandat 492.035 kb on - strandat 492.035 kb on - strandat 492.035 kb on - strandat 492.035 kb on - strandat 492.035 kb on - strandat 492.050 kb on + strandat 492.050 kb on + strandat 492.050 kb on + strandat 492.050 kb on + strandat 492.051 kb on - strandat 492.051 kb on - strandat 492.051 kb on - strandat 492.147 kb on + strandat 492.148 kb on - strandat 492.186 kb on + strand, within GFF1176at 492.187 kb on - strand, within GFF1176at 492.187 kb on - strand, within GFF1176at 492.396 kb on + strand, within GFF1176at 492.396 kb on + strand, within GFF1176at 492.396 kb on + strand, within GFF1176at 492.397 kb on - strand, within GFF1176at 493.101 kb on + strand, within GFF1176at 493.101 kb on + strand, within GFF1176at 493.101 kb on + strand, within GFF1176at 493.101 kb on + strand, within GFF1176at 493.101 kb on + strand, within GFF1176at 493.102 kb on - strand, within GFF1176at 493.102 kb on - strand, within GFF1176at 493.102 kb on - strand, within GFF1176at 493.227 kb on + strand, within GFF1176at 493.227 kb on + strand, within GFF1176at 493.228 kb on - strand, within GFF1176at 493.416 kb on + strandat 493.417 kb on - strandat 493.417 kb on - strandat 493.457 kb on + strandat 493.458 kb on - strandat 493.458 kb on - strandat 493.458 kb on - strandat 493.458 kb on - strandat 493.458 kb on - strandat 493.564 kb on + strandat 493.564 kb on + strandat 493.564 kb on + strandat 493.565 kb on - strandat 493.565 kb on - strandat 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.264 kb on + strand, within GFF1177at 494.265 kb on - strand, within GFF1177at 494.265 kb on - strand, within GFF1177at 494.265 kb on - strand, within GFF1177at 494.266 kb on + strand, within GFF1177at 494.266 kb on + strand, within GFF1177at 494.266 kb on + strand, within GFF1177at 494.266 kb on + strand, within GFF1177at 494.266 kb on + strand, within GFF1177at 494.267 kb on - strand, within GFF1177at 494.267 kb on - strand, within GFF1177at 494.267 kb on - strand, within GFF1177at 494.267 kb on - strand, within GFF1177at 494.267 kb on - strand, within GFF1177

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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491,140 + GFF1174 0.75 +0.8
491,140 + GFF1174 0.75 +0.6
491,140 + GFF1174 0.75 -1.5
491,141 - GFF1174 0.75 -0.3
491,254 + GFF1174 0.90 -0.3
491,291 + +1.4
491,292 - -1.0
491,354 - +0.4
491,411 + -0.7
491,411 + +0.1
491,412 - +1.2
491,467 + GFF1175 0.11 -0.2
491,467 + GFF1175 0.11 -0.5
491,468 - GFF1175 0.11 +0.7
491,527 + GFF1175 0.20 -0.4
491,527 + GFF1175 0.20 -1.4
491,527 + GFF1175 0.20 -1.3
491,528 - GFF1175 0.20 -0.5
491,657 + GFF1175 0.40 -0.6
491,657 + GFF1175 0.40 +0.5
491,657 + GFF1175 0.40 +0.7
491,657 + GFF1175 0.40 -0.7
491,657 + GFF1175 0.40 -1.0
491,657 + GFF1175 0.40 +0.2
491,658 - GFF1175 0.40 +1.6
491,658 - GFF1175 0.40 +0.1
491,658 - GFF1175 0.40 +0.3
491,658 - GFF1175 0.40 +0.2
491,658 - GFF1175 0.40 +0.4
491,686 + GFF1175 0.44 -0.4
491,686 + GFF1175 0.44 -0.2
491,686 + GFF1175 0.44 -0.6
491,687 - GFF1175 0.44 -1.0
491,687 - GFF1175 0.44 -0.3
491,687 - GFF1175 0.44 -0.4
491,701 + GFF1175 0.46 -0.8
491,701 + GFF1175 0.46 +0.2
491,773 + GFF1175 0.57 -0.3
491,773 + GFF1175 0.57 -0.6
491,774 - GFF1175 0.57 +0.9
491,774 - GFF1175 0.57 +2.0
491,774 - GFF1175 0.57 +1.2
491,774 - GFF1175 0.57 -0.2
491,929 + GFF1175 0.81 -0.6
491,929 + GFF1175 0.81 -1.3
491,930 - GFF1175 0.81 +1.1
491,930 - GFF1175 0.81 -2.9
491,971 + GFF1175 0.87 -1.2
491,971 + GFF1175 0.87 +0.6
491,971 + GFF1175 0.87 -1.3
491,971 + GFF1175 0.87 -1.0
491,971 + GFF1175 0.87 -0.3
491,971 + GFF1175 0.87 -0.1
491,971 + GFF1175 0.87 +1.1
491,972 - GFF1175 0.87 +0.0
491,972 - GFF1175 0.87 +0.2
491,972 - GFF1175 0.87 -0.9
491,972 - GFF1175 0.87 +0.0
492,034 + +0.9
492,034 + +0.4
492,034 + -1.5
492,034 + +0.5
492,034 + +0.6
492,035 - -0.8
492,035 - +0.6
492,035 - -1.0
492,035 - -1.4
492,035 - +2.4
492,050 + -0.5
492,050 + +1.4
492,050 + -0.4
492,050 + -0.9
492,051 - +0.1
492,051 - +1.0
492,051 - +0.2
492,147 + -1.6
492,148 - -1.4
492,186 + GFF1176 0.10 -1.4
492,187 - GFF1176 0.10 -1.4
492,187 - GFF1176 0.10 +0.6
492,396 + GFF1176 0.26 -1.3
492,396 + GFF1176 0.26 +0.7
492,396 + GFF1176 0.26 +0.2
492,397 - GFF1176 0.26 +0.6
493,101 + GFF1176 0.79 -1.3
493,101 + GFF1176 0.79 -0.1
493,101 + GFF1176 0.79 +1.1
493,101 + GFF1176 0.79 +1.1
493,101 + GFF1176 0.79 -2.4
493,102 - GFF1176 0.79 +0.1
493,102 - GFF1176 0.79 +0.8
493,102 - GFF1176 0.79 -2.0
493,227 + GFF1176 0.88 +0.3
493,227 + GFF1176 0.88 +1.0
493,228 - GFF1176 0.89 -0.3
493,416 + -0.4
493,417 - -0.3
493,417 - -0.1
493,457 + +0.2
493,458 - +0.2
493,458 - +0.3
493,458 - +0.4
493,458 - -0.4
493,458 - +1.1
493,564 + -0.0
493,564 + +0.3
493,564 + -0.4
493,565 - -0.8
493,565 - -0.3
494,164 + GFF1177 0.46 +0.3
494,164 + GFF1177 0.46 -0.9
494,164 + GFF1177 0.46 -0.4
494,164 + GFF1177 0.46 -0.7
494,164 + GFF1177 0.46 +0.2
494,164 + GFF1177 0.46 -0.4
494,164 + GFF1177 0.46 -2.3
494,164 + GFF1177 0.46 -1.6
494,164 + GFF1177 0.46 -0.1
494,164 + GFF1177 0.46 -0.4
494,164 + GFF1177 0.46 -0.8
494,164 + GFF1177 0.46 +1.6
494,164 + GFF1177 0.46 -0.5
494,164 + GFF1177 0.46 -0.8
494,165 - GFF1177 0.46 +0.8
494,165 - GFF1177 0.46 +0.2
494,165 - GFF1177 0.46 -1.4
494,165 - GFF1177 0.46 -0.9
494,165 - GFF1177 0.46 -1.0
494,165 - GFF1177 0.46 -0.1
494,264 + GFF1177 0.53 -1.4
494,265 - GFF1177 0.53 -0.0
494,265 - GFF1177 0.53 -0.7
494,265 - GFF1177 0.53 -0.9
494,266 + GFF1177 0.53 -0.4
494,266 + GFF1177 0.53 -0.3
494,266 + GFF1177 0.53 +0.4
494,266 + GFF1177 0.53 -1.3
494,266 + GFF1177 0.53 -0.3
494,267 - GFF1177 0.53 -0.8
494,267 - GFF1177 0.53 -0.4
494,267 - GFF1177 0.53 -1.4
494,267 - GFF1177 0.53 -0.3
494,267 - GFF1177 0.53 -0.8

Or see this region's nucleotide sequence