Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1121 and GFF1122 are separated by 4 nucleotides GFF1122 and GFF1123 overlap by 4 nucleotides GFF1123 and GFF1124 are separated by 80 nucleotides GFF1124 and GFF1125 are separated by 195 nucleotides
GFF1121 - Molybdopterin molybdenumtransferase (EC 2.10.1.1), at 437,164 to 438,474
GFF1121
GFF1122 - Molybdenum cofactor guanylyltransferase (EC 2.7.7.77), at 438,479 to 439,138
GFF1122
GFF1123 - GTP 3',8-cyclase (EC 4.1.99.22), at 439,135 to 440,292
GFF1123
GFF1124 - no description, at 440,373 to 441,074
GFF1124
GFF1125 - Superoxide dismutase [Mn] (EC 1.15.1.1), at 441,270 to 441,905
GFF1125
Position (kb) 439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 438.255 kb on - strand, within GFF1121 at 438.255 kb on - strand, within GFF1121 at 438.435 kb on - strand at 438.564 kb on - strand, within GFF1122 at 438.882 kb on + strand, within GFF1122 at 438.883 kb on - strand, within GFF1122 at 438.883 kb on - strand, within GFF1122 at 438.927 kb on + strand, within GFF1122 at 438.927 kb on + strand, within GFF1122 at 438.927 kb on + strand, within GFF1122 at 438.927 kb on + strand, within GFF1122 at 438.927 kb on + strand, within GFF1122 at 438.927 kb on + strand, within GFF1122 at 438.927 kb on + strand, within GFF1122 at 438.928 kb on - strand, within GFF1122 at 438.928 kb on - strand, within GFF1122 at 438.928 kb on - strand, within GFF1122 at 438.928 kb on - strand, within GFF1122 at 438.928 kb on - strand, within GFF1122 at 438.928 kb on - strand, within GFF1122 at 438.928 kb on - strand, within GFF1122 at 438.989 kb on + strand, within GFF1122 at 438.989 kb on + strand, within GFF1122 at 438.989 kb on + strand, within GFF1122 at 438.990 kb on - strand, within GFF1122 at 438.990 kb on - strand, within GFF1122 at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.148 kb on + strand at 439.149 kb on - strand at 439.149 kb on - strand at 439.149 kb on - strand at 439.149 kb on - strand at 439.149 kb on - strand at 439.149 kb on - strand at 439.149 kb on - strand at 439.229 kb on + strand at 439.229 kb on + strand at 439.230 kb on - strand at 439.346 kb on + strand, within GFF1123 at 439.346 kb on + strand, within GFF1123 at 439.346 kb on + strand, within GFF1123 at 439.347 kb on - strand, within GFF1123 at 439.347 kb on - strand, within GFF1123 at 439.347 kb on - strand, within GFF1123 at 439.347 kb on - strand, within GFF1123 at 439.445 kb on + strand, within GFF1123 at 439.445 kb on + strand, within GFF1123 at 439.445 kb on + strand, within GFF1123 at 439.446 kb on - strand, within GFF1123 at 439.446 kb on - strand, within GFF1123 at 439.446 kb on - strand, within GFF1123 at 439.446 kb on - strand, within GFF1123 at 439.586 kb on + strand, within GFF1123 at 439.586 kb on + strand, within GFF1123 at 439.586 kb on + strand, within GFF1123 at 439.586 kb on + strand, within GFF1123 at 439.586 kb on + strand, within GFF1123 at 439.587 kb on - strand, within GFF1123 at 439.587 kb on - strand, within GFF1123 at 439.587 kb on - strand, within GFF1123 at 439.587 kb on - strand, within GFF1123 at 439.587 kb on - strand, within GFF1123 at 439.587 kb on - strand, within GFF1123 at 439.587 kb on - strand, within GFF1123 at 439.587 kb on - strand, within GFF1123 at 439.587 kb on - strand, within GFF1123 at 439.587 kb on - strand, within GFF1123 at 439.634 kb on + strand, within GFF1123 at 439.634 kb on + strand, within GFF1123 at 439.634 kb on + strand, within GFF1123 at 439.635 kb on - strand, within GFF1123 at 439.635 kb on - strand, within GFF1123 at 439.651 kb on + strand, within GFF1123 at 439.651 kb on + strand, within GFF1123 at 439.651 kb on + strand, within GFF1123 at 439.652 kb on - strand, within GFF1123 at 439.652 kb on - strand, within GFF1123 at 439.652 kb on - strand, within GFF1123 at 439.652 kb on - strand, within GFF1123 at 439.652 kb on - strand, within GFF1123 at 439.652 kb on - strand, within GFF1123 at 439.652 kb on - strand, within GFF1123 at 439.652 kb on - strand, within GFF1123 at 440.069 kb on + strand, within GFF1123 at 440.069 kb on + strand, within GFF1123 at 440.069 kb on + strand, within GFF1123 at 440.069 kb on + strand, within GFF1123 at 440.069 kb on + strand, within GFF1123 at 440.070 kb on - strand, within GFF1123 at 440.070 kb on - strand, within GFF1123 at 440.070 kb on - strand, within GFF1123 at 440.070 kb on - strand, within GFF1123 at 440.070 kb on - strand, within GFF1123 at 440.070 kb on - strand, within GFF1123 at 440.075 kb on + strand, within GFF1123 at 440.075 kb on + strand, within GFF1123 at 440.075 kb on + strand, within GFF1123 at 440.075 kb on + strand, within GFF1123 at 440.075 kb on + strand, within GFF1123 at 440.075 kb on + strand, within GFF1123 at 440.076 kb on - strand, within GFF1123 at 440.076 kb on - strand, within GFF1123 at 440.076 kb on - strand, within GFF1123 at 440.076 kb on - strand, within GFF1123 at 440.108 kb on + strand, within GFF1123 at 440.108 kb on + strand, within GFF1123 at 440.108 kb on + strand, within GFF1123 at 440.108 kb on + strand, within GFF1123 at 440.109 kb on - strand, within GFF1123 at 440.109 kb on - strand, within GFF1123 at 440.109 kb on - strand, within GFF1123 at 440.109 kb on - strand, within GFF1123 at 440.109 kb on - strand, within GFF1123 at 440.109 kb on - strand, within GFF1123 at 440.109 kb on - strand, within GFF1123 at 440.109 kb on - strand, within GFF1123 at 440.109 kb on - strand, within GFF1123 at 440.109 kb on - strand, within GFF1123 at 440.343 kb on + strand at 440.343 kb on + strand at 440.344 kb on - strand at 440.344 kb on - strand at 440.374 kb on + strand at 440.449 kb on + strand, within GFF1124 at 440.449 kb on + strand, within GFF1124 at 440.449 kb on + strand, within GFF1124 at 440.450 kb on - strand, within GFF1124 at 440.450 kb on - strand, within GFF1124 at 440.644 kb on + strand, within GFF1124 at 440.644 kb on + strand, within GFF1124 at 440.644 kb on + strand, within GFF1124 at 440.644 kb on + strand, within GFF1124 at 440.645 kb on - strand, within GFF1124 at 440.659 kb on + strand, within GFF1124 at 440.660 kb on - strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.728 kb on + strand, within GFF1124 at 440.729 kb on - strand, within GFF1124 at 440.729 kb on - strand, within GFF1124 at 440.729 kb on - strand, within GFF1124 at 440.729 kb on - strand, within GFF1124 at 440.729 kb on - strand, within GFF1124 at 440.729 kb on - strand, within GFF1124 at 440.729 kb on - strand, within GFF1124 at 440.729 kb on - strand, within GFF1124 at 440.729 kb on - strand, within GFF1124 at 440.829 kb on + strand, within GFF1124 at 440.829 kb on + strand, within GFF1124 at 440.829 kb on + strand, within GFF1124 at 440.829 kb on + strand, within GFF1124 at 440.829 kb on + strand, within GFF1124 at 440.830 kb on - strand, within GFF1124 at 440.830 kb on - strand, within GFF1124 at 440.830 kb on - strand, within GFF1124 at 440.830 kb on - strand, within GFF1124 at 440.830 kb on - strand, within GFF1124 at 440.830 kb on - strand, within GFF1124 at 440.830 kb on - strand, within GFF1124 at 440.830 kb on - strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.968 kb on + strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.969 kb on - strand, within GFF1124 at 440.974 kb on + strand, within GFF1124 at 440.974 kb on + strand, within GFF1124 at 440.974 kb on + strand, within GFF1124 at 440.974 kb on + strand, within GFF1124 at 440.974 kb on + strand, within GFF1124 at 440.974 kb on + strand, within GFF1124 at 440.974 kb on + strand, within GFF1124 at 440.974 kb on + strand, within GFF1124 at 440.974 kb on + strand, within GFF1124 at 440.974 kb on + strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 440.975 kb on - strand, within GFF1124 at 441.112 kb on + strand at 441.112 kb on + strand at 441.112 kb on + strand at 441.112 kb on + strand at 441.112 kb on + strand at 441.112 kb on + strand at 441.112 kb on + strand at 441.112 kb on + strand at 441.113 kb on - strand at 441.113 kb on - strand at 441.113 kb on - strand at 441.113 kb on - strand at 441.216 kb on + strand at 441.216 kb on + strand at 441.217 kb on - strand at 441.217 kb on - strand at 441.276 kb on + strand at 441.276 kb on + strand at 441.276 kb on + strand at 441.276 kb on + strand at 441.276 kb on + strand at 441.276 kb on + strand at 441.276 kb on + strand at 441.277 kb on - strand at 441.277 kb on - strand at 441.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 438,255 - GFF1121 0.83 +0.3 438,255 - GFF1121 0.83 -0.2 438,435 - +1.5 438,564 - GFF1122 0.13 -0.4 438,882 + GFF1122 0.61 +0.2 438,883 - GFF1122 0.61 -0.6 438,883 - GFF1122 0.61 -0.2 438,927 + GFF1122 0.68 -1.3 438,927 + GFF1122 0.68 -0.6 438,927 + GFF1122 0.68 +1.0 438,927 + GFF1122 0.68 -0.3 438,927 + GFF1122 0.68 -0.1 438,927 + GFF1122 0.68 -1.1 438,927 + GFF1122 0.68 +0.4 438,928 - GFF1122 0.68 -0.6 438,928 - GFF1122 0.68 -0.4 438,928 - GFF1122 0.68 -0.7 438,928 - GFF1122 0.68 -0.2 438,928 - GFF1122 0.68 -1.4 438,928 - GFF1122 0.68 -0.2 438,928 - GFF1122 0.68 +0.1 438,989 + GFF1122 0.77 -0.4 438,989 + GFF1122 0.77 -0.3 438,989 + GFF1122 0.77 -1.0 438,990 - GFF1122 0.77 +0.6 438,990 - GFF1122 0.77 -1.1 439,148 + -0.5 439,148 + -0.2 439,148 + +0.9 439,148 + +0.6 439,148 + +0.1 439,148 + +0.5 439,148 + -0.4 439,148 + -0.6 439,148 + -0.5 439,148 + +0.5 439,148 + -1.1 439,148 + +0.2 439,148 + -1.3 439,148 + -0.5 439,148 + +0.1 439,148 + +0.5 439,148 + -1.9 439,149 - -0.4 439,149 - -1.1 439,149 - -0.6 439,149 - -0.0 439,149 - +0.6 439,149 - -0.9 439,149 - -0.2 439,229 + +1.2 439,229 + +0.6 439,230 - -0.1 439,346 + GFF1123 0.18 +1.2 439,346 + GFF1123 0.18 -0.1 439,346 + GFF1123 0.18 -0.7 439,347 - GFF1123 0.18 -0.2 439,347 - GFF1123 0.18 -0.1 439,347 - GFF1123 0.18 -0.4 439,347 - GFF1123 0.18 +0.6 439,445 + GFF1123 0.27 +0.4 439,445 + GFF1123 0.27 -0.3 439,445 + GFF1123 0.27 -1.8 439,446 - GFF1123 0.27 -0.3 439,446 - GFF1123 0.27 +0.8 439,446 - GFF1123 0.27 -0.7 439,446 - GFF1123 0.27 +1.0 439,586 + GFF1123 0.39 -0.4 439,586 + GFF1123 0.39 -0.5 439,586 + GFF1123 0.39 +0.6 439,586 + GFF1123 0.39 -0.4 439,586 + GFF1123 0.39 +0.8 439,587 - GFF1123 0.39 +0.9 439,587 - GFF1123 0.39 -1.9 439,587 - GFF1123 0.39 +0.5 439,587 - GFF1123 0.39 -0.2 439,587 - GFF1123 0.39 -0.0 439,587 - GFF1123 0.39 +0.2 439,587 - GFF1123 0.39 -0.6 439,587 - GFF1123 0.39 +0.1 439,587 - GFF1123 0.39 -0.2 439,587 - GFF1123 0.39 +0.7 439,634 + GFF1123 0.43 -0.9 439,634 + GFF1123 0.43 +0.1 439,634 + GFF1123 0.43 -1.0 439,635 - GFF1123 0.43 +1.3 439,635 - GFF1123 0.43 -0.2 439,651 + GFF1123 0.45 +0.2 439,651 + GFF1123 0.45 +2.4 439,651 + GFF1123 0.45 -0.7 439,652 - GFF1123 0.45 -0.7 439,652 - GFF1123 0.45 +0.0 439,652 - GFF1123 0.45 +0.6 439,652 - GFF1123 0.45 -0.2 439,652 - GFF1123 0.45 -0.5 439,652 - GFF1123 0.45 -1.3 439,652 - GFF1123 0.45 -0.0 439,652 - GFF1123 0.45 +0.2 440,069 + GFF1123 0.81 -0.8 440,069 + GFF1123 0.81 -1.3 440,069 + GFF1123 0.81 -0.7 440,069 + GFF1123 0.81 +0.2 440,069 + GFF1123 0.81 -0.6 440,070 - GFF1123 0.81 +0.8 440,070 - GFF1123 0.81 -0.2 440,070 - GFF1123 0.81 -0.4 440,070 - GFF1123 0.81 +0.1 440,070 - GFF1123 0.81 +1.0 440,070 - GFF1123 0.81 -0.2 440,075 + GFF1123 0.81 +0.6 440,075 + GFF1123 0.81 +0.2 440,075 + GFF1123 0.81 +0.8 440,075 + GFF1123 0.81 -0.7 440,075 + GFF1123 0.81 -0.3 440,075 + GFF1123 0.81 +1.0 440,076 - GFF1123 0.81 -0.6 440,076 - GFF1123 0.81 -0.4 440,076 - GFF1123 0.81 -0.1 440,076 - GFF1123 0.81 +0.8 440,108 + GFF1123 0.84 -0.6 440,108 + GFF1123 0.84 +0.3 440,108 + GFF1123 0.84 -2.0 440,108 + GFF1123 0.84 +0.4 440,109 - GFF1123 0.84 +0.7 440,109 - GFF1123 0.84 +0.7 440,109 - GFF1123 0.84 -0.7 440,109 - GFF1123 0.84 -0.9 440,109 - GFF1123 0.84 -0.2 440,109 - GFF1123 0.84 -2.1 440,109 - GFF1123 0.84 +1.0 440,109 - GFF1123 0.84 +1.2 440,109 - GFF1123 0.84 -1.5 440,109 - GFF1123 0.84 +0.4 440,343 + -1.5 440,343 + -0.2 440,344 - -1.1 440,344 - -1.2 440,374 + -0.2 440,449 + GFF1124 0.11 -1.2 440,449 + GFF1124 0.11 -3.1 440,449 + GFF1124 0.11 +0.6 440,450 - GFF1124 0.11 -0.7 440,450 - GFF1124 0.11 -0.4 440,644 + GFF1124 0.39 -1.0 440,644 + GFF1124 0.39 +1.0 440,644 + GFF1124 0.39 +0.4 440,644 + GFF1124 0.39 -1.1 440,645 - GFF1124 0.39 +0.7 440,659 + GFF1124 0.41 +0.1 440,660 - GFF1124 0.41 -0.5 440,728 + GFF1124 0.51 -0.3 440,728 + GFF1124 0.51 +0.4 440,728 + GFF1124 0.51 -0.3 440,728 + GFF1124 0.51 +1.8 440,728 + GFF1124 0.51 -1.2 440,728 + GFF1124 0.51 -0.5 440,728 + GFF1124 0.51 -0.8 440,728 + GFF1124 0.51 -1.4 440,728 + GFF1124 0.51 -0.0 440,728 + GFF1124 0.51 +0.4 440,728 + GFF1124 0.51 -2.7 440,728 + GFF1124 0.51 -0.0 440,729 - GFF1124 0.51 -0.7 440,729 - GFF1124 0.51 -0.6 440,729 - GFF1124 0.51 +1.0 440,729 - GFF1124 0.51 -0.4 440,729 - GFF1124 0.51 -1.7 440,729 - GFF1124 0.51 +0.2 440,729 - GFF1124 0.51 -0.2 440,729 - GFF1124 0.51 -0.4 440,729 - GFF1124 0.51 +0.6 440,829 + GFF1124 0.65 -1.3 440,829 + GFF1124 0.65 -1.2 440,829 + GFF1124 0.65 +0.1 440,829 + GFF1124 0.65 +0.4 440,829 + GFF1124 0.65 +0.1 440,830 - GFF1124 0.65 -0.2 440,830 - GFF1124 0.65 -0.2 440,830 - GFF1124 0.65 +0.5 440,830 - GFF1124 0.65 -0.4 440,830 - GFF1124 0.65 +2.3 440,830 - GFF1124 0.65 -0.3 440,830 - GFF1124 0.65 +2.2 440,830 - GFF1124 0.65 -1.0 440,968 + GFF1124 0.85 -0.0 440,968 + GFF1124 0.85 +0.4 440,968 + GFF1124 0.85 +0.4 440,968 + GFF1124 0.85 +0.1 440,968 + GFF1124 0.85 +0.3 440,968 + GFF1124 0.85 -0.6 440,968 + GFF1124 0.85 -0.3 440,968 + GFF1124 0.85 +0.4 440,968 + GFF1124 0.85 +0.4 440,968 + GFF1124 0.85 +1.6 440,968 + GFF1124 0.85 +1.1 440,968 + GFF1124 0.85 -1.0 440,968 + GFF1124 0.85 +0.7 440,969 - GFF1124 0.85 -1.2 440,969 - GFF1124 0.85 +0.2 440,969 - GFF1124 0.85 +0.1 440,969 - GFF1124 0.85 -1.2 440,969 - GFF1124 0.85 +0.2 440,969 - GFF1124 0.85 -0.6 440,969 - GFF1124 0.85 +2.6 440,969 - GFF1124 0.85 -0.4 440,969 - GFF1124 0.85 +0.2 440,969 - GFF1124 0.85 -0.7 440,969 - GFF1124 0.85 -0.2 440,969 - GFF1124 0.85 +0.3 440,974 + GFF1124 0.86 +0.3 440,974 + GFF1124 0.86 -0.0 440,974 + GFF1124 0.86 -0.6 440,974 + GFF1124 0.86 +0.1 440,974 + GFF1124 0.86 +0.1 440,974 + GFF1124 0.86 -1.2 440,974 + GFF1124 0.86 +1.6 440,974 + GFF1124 0.86 -0.6 440,974 + GFF1124 0.86 -0.6 440,974 + GFF1124 0.86 -0.3 440,975 - GFF1124 0.86 -0.3 440,975 - GFF1124 0.86 +0.6 440,975 - GFF1124 0.86 -1.1 440,975 - GFF1124 0.86 -0.4 440,975 - GFF1124 0.86 -0.9 440,975 - GFF1124 0.86 +1.6 440,975 - GFF1124 0.86 -1.3 440,975 - GFF1124 0.86 -0.2 440,975 - GFF1124 0.86 -2.7 440,975 - GFF1124 0.86 -0.4 440,975 - GFF1124 0.86 +0.0 440,975 - GFF1124 0.86 -0.0 440,975 - GFF1124 0.86 -0.0 440,975 - GFF1124 0.86 +0.1 440,975 - GFF1124 0.86 -0.6 441,112 + +1.6 441,112 + -0.3 441,112 + -0.1 441,112 + -0.5 441,112 + -0.7 441,112 + -0.5 441,112 + -2.3 441,112 + +0.3 441,113 - -1.0 441,113 - -0.5 441,113 - -0.3 441,113 - -0.1 441,216 + +1.3 441,216 + +0.7 441,217 - +0.6 441,217 - -0.2 441,276 + +0.2 441,276 + +0.3 441,276 + +0.1 441,276 + -0.2 441,276 + +0.1 441,276 + -0.0 441,276 + -0.4 441,277 - -1.3 441,277 - +1.4 441,277 - -0.6
Or see this region's nucleotide sequence