Strain Fitness in Variovorax sp. SCN45 around GFF803

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
107,164	-		GFF801	0.34	+0.1
107,164	-		GFF801	0.34	-0.6
107,211	+		GFF801	0.43	-0.0
107,212	-		GFF801	0.43	-0.9
107,212	-		GFF801	0.43	-0.5
107,235	+		GFF801	0.48	+1.6
107,235	+		GFF801	0.48	-0.5
107,235	+		GFF801	0.48	-0.7
107,235	+		GFF801	0.48	-0.3
107,235	+		GFF801	0.48	-0.1
107,235	+		GFF801	0.48	-1.1
107,235	+		GFF801	0.48	-0.1
107,235	+		GFF801	0.48	-0.0
107,235	+		GFF801	0.48	+0.3
107,235	+		GFF801	0.48	-1.9
107,235	+		GFF801	0.48	-0.3
107,235	+		GFF801	0.48	-0.4
107,236	-		GFF801	0.48	-0.8
107,236	-		GFF801	0.48	-0.5
107,236	-		GFF801	0.48	-0.1
107,236	-		GFF801	0.48	+1.0
107,236	-		GFF801	0.48	-1.1
107,236	-		GFF801	0.48	-1.0
107,236	-		GFF801	0.48	-1.4
107,236	-		GFF801	0.48	+0.2
107,236	-		GFF801	0.48	-1.9
107,590	+				+0.3
107,590	+				-0.4
107,590	+				-0.9
107,591	-				+0.4
107,591	-				-0.7
107,591	-				+0.3
107,630	+				-0.3
107,630	+				-0.2
107,631	-				+0.2
107,631	-				-0.7
107,631	-				-1.4
107,631	-				+0.4
107,714	+		GFF802	0.17	+0.4
107,714	+		GFF802	0.17	-0.1
107,714	+		GFF802	0.17	-0.7
107,715	-		GFF802	0.18	-0.9
107,715	-		GFF802	0.18	+0.1
107,715	-		GFF802	0.18	-0.2
107,723	+		GFF802	0.19	+0.2
107,723	+		GFF802	0.19	+0.9
107,723	+		GFF802	0.19	-0.2
107,723	+		GFF802	0.19	-0.3
107,723	+		GFF802	0.19	-0.8
107,723	+		GFF802	0.19	+0.3
107,724	-		GFF802	0.19	-1.3
107,724	-		GFF802	0.19	-0.9
107,724	-		GFF802	0.19	+0.1
107,724	-		GFF802	0.19	+0.1
107,801	+		GFF802	0.35	+1.0
107,801	+		GFF802	0.35	+0.0
107,801	+		GFF802	0.35	-0.8
107,801	+		GFF802	0.35	-0.0
107,801	+		GFF802	0.35	-1.1
107,802	-		GFF802	0.35	-1.5
107,802	-		GFF802	0.35	+0.2
107,936	+		GFF802	0.63	-1.0
107,936	+		GFF802	0.63	+0.3
107,936	+		GFF802	0.63	+0.4
107,936	+		GFF802	0.63	-0.4
107,936	+		GFF802	0.63	-0.8
107,936	+		GFF802	0.63	-0.1
107,936	+		GFF802	0.63	+0.9
107,936	+		GFF802	0.63	-0.7
107,936	+		GFF802	0.63	-0.2
107,936	+		GFF802	0.63	-1.3
107,936	+		GFF802	0.63	-0.8
107,936	+		GFF802	0.63	-1.0
107,936	+		GFF802	0.63	+0.3
107,936	+		GFF802	0.63	-0.3
107,936	+		GFF802	0.63	-0.5
107,937	-		GFF802	0.63	-1.7
107,937	-		GFF802	0.63	-1.9
107,937	-		GFF802	0.63	-0.5
107,937	-		GFF802	0.63	-0.8
107,937	-		GFF802	0.63	-0.2
107,937	-		GFF802	0.63	-1.1
107,937	-		GFF802	0.63	+0.6
107,937	-		GFF802	0.63	-1.6
107,937	-		GFF802	0.63	+0.2
107,937	-		GFF802	0.63	+0.1
107,937	-		GFF802	0.63	-1.8
107,937	-		GFF802	0.63	+0.6
107,937	-		GFF802	0.63	-0.6
107,937	-		GFF802	0.63	+1.6
107,937	-		GFF802	0.63	-0.4
107,937	-		GFF802	0.63	-0.2
107,937	-		GFF802	0.63	-0.7
107,969	+		GFF802	0.70	+0.9
107,969	+		GFF802	0.70	-1.2
107,969	+		GFF802	0.70	-0.2
107,969	+		GFF802	0.70	+1.6
107,970	-		GFF802	0.70	+0.2
107,970	-		GFF802	0.70	-0.5
107,970	-		GFF802	0.70	+0.1
107,977	+		GFF802	0.71	-0.2
107,977	+		GFF802	0.71	+2.0
107,977	+		GFF802	0.71	-0.4
107,978	-		GFF802	0.71	+0.0
107,978	-		GFF802	0.71	-0.8
107,978	-		GFF802	0.71	-0.4
107,978	-		GFF802	0.71	+0.3
108,190	+		GFF803	0.11	+0.6
108,190	+		GFF803	0.11	-0.6
108,190	+		GFF803	0.11	+0.1
108,190	+		GFF803	0.11	+0.6
108,191	-		GFF803	0.11	-1.0
108,191	-		GFF803	0.11	-1.3
108,191	-		GFF803	0.11	-1.2
108,319	+		GFF803	0.34	+0.3
108,319	+		GFF803	0.34	-0.1
108,319	+		GFF803	0.34	-1.1
108,562	+		GFF803	0.78	-0.1
108,562	+		GFF803	0.78	-1.8
108,562	+		GFF803	0.78	+0.2
108,562	+		GFF803	0.78	+0.5
108,563	-		GFF803	0.78	-1.1
108,628	+				-0.1
108,628	+				-0.1
108,628	+				+1.0
109,080	+		GFF804	0.54	+0.8
109,080	+		GFF804	0.54	-2.4
109,080	+		GFF804	0.54	-1.2
109,080	+		GFF804	0.54	+0.1
109,080	+		GFF804	0.54	-0.0
109,080	+		GFF804	0.54	-0.0
109,080	+		GFF804	0.54	-0.8
109,080	+		GFF804	0.54	+1.1
109,080	+		GFF804	0.54	-1.2
109,080	+		GFF804	0.54	-1.1
109,080	+		GFF804	0.54	-0.0
109,080	+		GFF804	0.54	-0.2
109,080	+		GFF804	0.54	-0.9
109,080	+		GFF804	0.54	-0.5
109,182	+		GFF804	0.69	-0.4
109,246	-		GFF804	0.78	+0.8
109,296	+		GFF804	0.85	-0.4
109,296	+		GFF804	0.85	-0.2
109,296	+		GFF804	0.85	+2.0
109,297	-		GFF804	0.85	+1.1
109,297	-		GFF804	0.85	-0.2
109,297	-		GFF804	0.85	-2.0
109,297	-		GFF804	0.85	-0.1
109,297	-		GFF804	0.85	-0.0
109,297	-		GFF804	0.85	+0.8
109,297	-		GFF804	0.85	-0.0
109,297	-		GFF804	0.85	-0.7
109,297	-		GFF804	0.85	-0.0
109,314	+		GFF804	0.87	-0.1
109,314	+		GFF804	0.87	-0.3
109,314	+		GFF804	0.87	+0.1
109,314	+		GFF804	0.87	+1.1
109,314	+		GFF804	0.87	+0.3
109,314	+		GFF804	0.87	-0.7
109,315	-		GFF804	0.87	-0.3
109,315	-		GFF804	0.87	-0.9
109,315	-		GFF804	0.87	-0.2
109,315	-		GFF804	0.87	-0.3
109,315	-		GFF804	0.87	+0.1
109,315	-		GFF804	0.87	+0.4
109,315	-		GFF804	0.87	-0.0
109,618	+		GFF805	0.11	-0.3
109,618	+		GFF805	0.11	+0.2
109,619	-		GFF805	0.11	-0.2
109,619	-		GFF805	0.11	-0.2
109,663	+		GFF805	0.16	-0.6
109,663	+		GFF805	0.16	+0.4
109,663	+		GFF805	0.16	-0.1
109,663	+		GFF805	0.16	-0.2
109,664	-		GFF805	0.16	+0.1