Strain Fitness in Variovorax sp. SCN45 around GFF7114

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
31,260	+		GFF7112	0.74	+0.3
31,260	+		GFF7112	0.74	+0.3
31,260	+		GFF7112	0.74	-1.7
31,260	+		GFF7112	0.74	+1.4
31,261	-		GFF7112	0.74	-0.8
31,261	-		GFF7112	0.74	-0.6
31,290	+		GFF7112	0.76	-0.6
31,290	+		GFF7112	0.76	-0.3
31,291	-		GFF7112	0.76	+0.1
31,291	-		GFF7112	0.76	+0.4
31,291	-		GFF7112	0.76	+0.1
31,291	-		GFF7112	0.76	+1.0
31,291	-		GFF7112	0.76	+0.6
31,471	-		GFF7112	0.87	+0.6
31,471	-		GFF7112	0.87	+0.0
31,471	-		GFF7112	0.87	+1.5
31,471	-		GFF7112	0.87	+0.8
31,471	-		GFF7112	0.87	-0.6
31,479	+		GFF7112	0.88	-0.4
31,479	+		GFF7112	0.88	-1.0
31,479	+		GFF7112	0.88	+0.5
31,479	+		GFF7112	0.88	+0.6
31,479	+		GFF7112	0.88	-0.4
31,479	+		GFF7112	0.88	-0.0
31,479	+		GFF7112	0.88	-0.1
31,480	-		GFF7112	0.88	-1.0
31,480	-		GFF7112	0.88	-0.5
31,480	-		GFF7112	0.88	+0.4
31,480	-		GFF7112	0.88	-0.0
31,632	+				-0.3
31,632	+				-0.7
31,632	+				+0.6
31,633	-				-2.6
31,644	-				-0.2
31,751	+		GFF7113	0.11	+0.5
31,751	+		GFF7113	0.11	-0.3
31,751	+		GFF7113	0.11	-1.3
31,751	+		GFF7113	0.11	+1.0
31,751	+		GFF7113	0.11	+0.0
31,751	+		GFF7113	0.11	-0.3
31,751	+		GFF7113	0.11	-0.4
31,751	+		GFF7113	0.11	+0.7
31,751	+		GFF7113	0.11	-0.6
31,751	+		GFF7113	0.11	-0.5
31,752	-		GFF7113	0.12	+0.5
31,752	-		GFF7113	0.12	+0.1
31,752	-		GFF7113	0.12	-1.0
31,752	-		GFF7113	0.12	-0.3
31,752	-		GFF7113	0.12	-0.6
31,752	-		GFF7113	0.12	+0.0
31,752	-		GFF7113	0.12	-0.4
31,793	+		GFF7113	0.19	-0.1
31,799	+		GFF7113	0.20	-1.0
31,800	-		GFF7113	0.21	-0.4
31,800	-		GFF7113	0.21	-0.1
31,850	+		GFF7113	0.30	+0.8
31,850	+		GFF7113	0.30	-1.1
31,850	+		GFF7113	0.30	-0.6
31,850	+		GFF7113	0.30	-1.4
31,850	+		GFF7113	0.30	+1.2
31,850	+		GFF7113	0.30	-0.4
31,850	+		GFF7113	0.30	-0.6
31,850	+		GFF7113	0.30	-0.4
31,851	-		GFF7113	0.30	-0.6
31,851	-		GFF7113	0.30	-0.0
31,851	-		GFF7113	0.30	-1.4
31,851	-		GFF7113	0.30	-1.5
31,851	-		GFF7113	0.30	+0.1
31,851	-		GFF7113	0.30	+0.4
31,851	-		GFF7113	0.30	+0.6
31,868	+		GFF7113	0.33	-0.1
31,868	+		GFF7113	0.33	+0.0
31,869	-		GFF7113	0.34	+0.3
32,066	+		GFF7113	0.70	+2.0
32,067	-		GFF7113	0.71	+0.2
32,067	-		GFF7113	0.71	-1.2
32,190	+				-0.8
32,242	+				+1.0
32,242	+				-0.2
32,632	+		GFF7114	0.32	-0.7
32,632	+		GFF7114	0.32	-0.7
32,632	+		GFF7114	0.32	-0.4
32,656	+		GFF7114	0.34	-1.3
32,656	+		GFF7114	0.34	-0.3
32,656	+		GFF7114	0.34	-0.2
32,656	+		GFF7114	0.34	-0.4
32,656	+		GFF7114	0.34	+0.6
32,656	+		GFF7114	0.34	-1.0
32,656	+		GFF7114	0.34	-0.8
32,656	+		GFF7114	0.34	-0.0
32,656	+		GFF7114	0.34	-0.1
32,656	+		GFF7114	0.34	-1.1
32,657	-		GFF7114	0.34	+0.3
32,657	-		GFF7114	0.34	-0.7
32,657	-		GFF7114	0.34	+0.3
32,657	-		GFF7114	0.34	+0.6
32,657	-		GFF7114	0.34	-0.2
32,657	-		GFF7114	0.34	-0.2
32,657	-		GFF7114	0.34	+0.2
32,657	-		GFF7114	0.34	+1.0
32,707	+		GFF7114	0.38	+1.3
32,707	+		GFF7114	0.38	-0.8
32,707	+		GFF7114	0.38	-1.5
32,707	+		GFF7114	0.38	-0.7
32,707	+		GFF7114	0.38	-0.4
32,707	+		GFF7114	0.38	-0.8
32,707	+		GFF7114	0.38	-1.4
32,707	+		GFF7114	0.38	-0.3
32,707	+		GFF7114	0.38	-0.5
32,708	-		GFF7114	0.38	+0.2
32,708	-		GFF7114	0.38	+0.2
32,708	-		GFF7114	0.38	-1.2
32,708	-		GFF7114	0.38	-0.1
32,708	-		GFF7114	0.38	-0.7
32,708	-		GFF7114	0.38	-0.8
32,708	-		GFF7114	0.38	-1.0
32,708	-		GFF7114	0.38	-0.6
32,708	-		GFF7114	0.38	-2.6
32,797	+		GFF7114	0.45	-0.2
32,798	-		GFF7114	0.45	+0.4
32,798	-		GFF7114	0.45	-0.2
32,807	+		GFF7114	0.45	-0.6
32,808	-		GFF7114	0.45	+1.0
32,808	-		GFF7114	0.45	+0.4
32,808	-		GFF7114	0.45	+1.5
32,855	-		GFF7114	0.49	-0.1
32,967	+		GFF7114	0.58	+0.1
32,967	+		GFF7114	0.58	-0.4
32,968	-		GFF7114	0.58	-0.3
32,968	-		GFF7114	0.58	+0.1
32,968	-		GFF7114	0.58	-0.7
32,968	-		GFF7114	0.58	+1.0
32,968	-		GFF7114	0.58	+0.4
33,160	+		GFF7114	0.73	-1.8
33,160	+		GFF7114	0.73	-0.0
33,161	-		GFF7114	0.73	-0.7
33,161	-		GFF7114	0.73	-0.7
33,161	-		GFF7114	0.73	-0.5
33,161	-		GFF7114	0.73	-0.4
33,161	-		GFF7114	0.73	+0.2
33,307	+		GFF7114	0.84	-0.6
33,307	+		GFF7114	0.84	+1.4
33,307	+		GFF7114	0.84	-0.6
33,307	+		GFF7114	0.84	-0.9
33,308	-		GFF7114	0.84	-0.6
33,308	-		GFF7114	0.84	+1.0
33,308	-		GFF7114	0.84	-0.4
33,308	-		GFF7114	0.84	-0.4
33,308	-		GFF7114	0.84	-1.2
33,308	-		GFF7114	0.84	-1.2
33,308	-		GFF7114	0.84	+1.5
33,361	+		GFF7114	0.88	+0.5
33,362	-		GFF7114	0.88	+0.8
33,404	+				+0.4
33,404	+				+2.6
33,404	+				-0.5
33,404	+				-0.6
33,404	+				-0.6
33,404	+				-0.8
33,404	+				+0.0
33,404	+				-1.0
33,404	+				+0.4
33,404	+				-0.2
33,404	+				-0.4
33,405	-				-0.1
33,405	-				+0.3
33,405	-				+1.3
33,405	-				-0.2
33,405	-				+1.2
33,405	-				-0.6
33,405	-				-0.4
33,405	-				+1.2
33,405	-				-0.5
33,405	-				-0.6
33,405	-				+0.9
33,405	-				-1.4
33,405	-				-1.0
33,405	-				+0.6
33,405	-				-1.6
33,406	+				-0.6
33,407	-				+0.2
33,407	-				-0.6
33,449	-				-0.8
33,449	-				+0.4
33,449	-				+1.0
33,469	+				+0.3
33,469	+				-0.4
33,470	-				-1.3
33,470	-				-0.4
33,470	-				+1.7
33,470	-				-0.2
33,470	-				-0.1
33,470	-				+0.1
33,470	-				-0.3
33,470	-				+3.0
33,470	-				+2.0
33,473	+				+0.4
33,473	+				+1.2
33,473	+				+0.0
33,474	-				+0.5
33,474	-				+0.5
33,474	-				+0.8
33,565	+				+0.1
33,565	+				-1.1
33,565	+				-0.2
33,565	+				-0.3
33,565	+				+0.0
33,565	+				+0.2
33,565	+				-0.1
33,565	+				-0.1
33,565	+				-1.6
33,565	+				-2.0
33,566	-				-0.2
33,566	-				-0.1
33,566	-				+0.1
33,566	-				-1.4
33,566	-				-0.6
33,567	+				-2.0
33,567	+				+0.3
33,568	-				-1.2
33,591	+				-0.3
33,591	+				-0.8
33,591	+				-0.4
33,591	+				-0.8
33,591	+				-0.8
33,591	+				+0.2
33,591	+				+1.2
33,591	+				-0.7
33,591	+				+1.1
33,591	+				+0.2
33,591	+				+0.0
33,592	-				-0.7
33,592	-				+0.0
33,592	-				+0.2
33,592	-				-0.4
33,592	-				-0.6
33,612	+				-1.4
33,657	+				-0.5
33,657	+				-0.8
33,657	+				+2.0
33,657	+				+0.3
33,657	+				-1.8
33,657	+				+0.1
33,657	+				-2.3
33,658	-				+0.2
33,658	-				-0.9
33,658	-				-0.9
33,658	-				+0.3
33,658	-				+0.6
33,686	+				-0.5
33,687	-				-0.0
33,687	-				-0.0
33,841	-		GFF7115	0.22	-1.5
33,897	+		GFF7115	0.29	-0.6
33,897	+		GFF7115	0.29	-0.3
33,897	+		GFF7115	0.29	-0.8
33,898	-		GFF7115	0.29	+0.4
33,898	-		GFF7115	0.29	-0.0
33,898	-		GFF7115	0.29	-0.4
33,918	+		GFF7115	0.31	+0.1
33,918	+		GFF7115	0.31	+1.0
33,919	-		GFF7115	0.31	-0.6
33,919	-		GFF7115	0.31	-0.2
34,101	-		GFF7115	0.53	-1.5
34,236	+		GFF7115	0.70	+0.5
34,236	+		GFF7115	0.70	-1.5
34,236	+		GFF7115	0.70	-0.0
34,236	+		GFF7115	0.70	+1.1
34,237	-		GFF7115	0.70	-0.5
34,237	-		GFF7115	0.70	-0.6
34,237	-		GFF7115	0.70	+0.1
34,237	-		GFF7115	0.70	-1.4
34,237	-		GFF7115	0.70	-0.8
34,237	-		GFF7115	0.70	-0.0
34,237	-		GFF7115	0.70	+0.8
34,237	-		GFF7115	0.70	-0.1
34,237	-		GFF7115	0.70	+0.6
34,237	-		GFF7115	0.70	-1.1
34,237	-		GFF7115	0.70	-0.7
34,245	+		GFF7115	0.71	-0.4
34,245	+		GFF7115	0.71	-0.8
34,246	-		GFF7115	0.71	-0.2
34,246	-		GFF7115	0.71	-0.5
34,246	-		GFF7115	0.71	+1.2
34,255	+		GFF7115	0.72	-0.5
34,255	+		GFF7115	0.72	-0.0
34,255	+		GFF7115	0.72	-0.6
34,256	-		GFF7115	0.72	-0.3
34,256	-		GFF7115	0.72	-0.7
34,256	-		GFF7115	0.72	+0.3
34,256	-		GFF7115	0.72	-0.4
34,256	-		GFF7115	0.72	-0.0
34,256	-		GFF7115	0.72	-0.2
34,256	-		GFF7115	0.72	+0.5
34,256	-		GFF7115	0.72	-0.3
34,256	-		GFF7115	0.72	-1.8
34,256	-		GFF7115	0.72	-0.4
34,256	-		GFF7115	0.72	-1.0
34,366	+		GFF7115	0.86	-1.1
34,366	+		GFF7115	0.86	+0.1