Strain Fitness in Variovorax sp. SCN45 around GFF6905

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6904 and GFF6905 are separated by 1 nucleotidesGFF6905 and GFF6906 are separated by 5 nucleotidesGFF6906 and GFF6907 are separated by 44 nucleotides GFF6904 - Zinc-type alcohol dehydrogenase-like protein, at 39,002 to 40,012 GFF6904 GFF6905 - Chloride channel protein, at 40,014 to 41,783 GFF6905 GFF6906 - Transcriptional regulator, MarR family, at 41,789 to 42,214 GFF6906 GFF6907 - Acetyltransferase, GNAT family, at 42,259 to 42,867 GFF6907 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 39.017 kb on + strandat 39.018 kb on - strandat 39.020 kb on + strandat 39.020 kb on + strandat 39.020 kb on + strandat 39.020 kb on + strandat 39.021 kb on - strandat 39.021 kb on - strandat 39.021 kb on - strandat 39.263 kb on + strand, within GFF6904at 39.264 kb on - strand, within GFF6904at 39.264 kb on - strand, within GFF6904at 39.266 kb on + strand, within GFF6904at 39.266 kb on + strand, within GFF6904at 39.266 kb on + strand, within GFF6904at 39.267 kb on - strand, within GFF6904at 39.267 kb on - strand, within GFF6904at 39.267 kb on - strand, within GFF6904at 39.267 kb on - strand, within GFF6904at 39.267 kb on - strand, within GFF6904at 39.398 kb on + strand, within GFF6904at 39.398 kb on + strand, within GFF6904at 39.398 kb on + strand, within GFF6904at 39.399 kb on - strand, within GFF6904at 39.399 kb on - strand, within GFF6904at 39.689 kb on + strand, within GFF6904at 39.689 kb on + strand, within GFF6904at 40.010 kb on + strandat 40.010 kb on + strandat 40.010 kb on + strandat 40.010 kb on + strandat 40.011 kb on - strandat 40.011 kb on - strandat 40.011 kb on - strandat 40.011 kb on - strandat 40.015 kb on + strandat 40.016 kb on - strandat 40.016 kb on - strandat 40.016 kb on - strandat 40.222 kb on + strand, within GFF6905at 40.222 kb on + strand, within GFF6905at 40.223 kb on - strand, within GFF6905at 40.223 kb on - strand, within GFF6905at 40.369 kb on + strand, within GFF6905at 40.369 kb on + strand, within GFF6905at 40.369 kb on + strand, within GFF6905at 40.472 kb on - strand, within GFF6905at 40.480 kb on + strand, within GFF6905at 40.480 kb on + strand, within GFF6905at 40.480 kb on + strand, within GFF6905at 40.481 kb on - strand, within GFF6905at 40.481 kb on - strand, within GFF6905at 40.481 kb on - strand, within GFF6905at 40.552 kb on + strand, within GFF6905at 40.883 kb on - strand, within GFF6905at 40.883 kb on - strand, within GFF6905at 40.927 kb on - strand, within GFF6905at 40.999 kb on + strand, within GFF6905at 40.999 kb on + strand, within GFF6905at 40.999 kb on + strand, within GFF6905at 41.000 kb on - strand, within GFF6905at 41.000 kb on - strand, within GFF6905at 41.000 kb on - strand, within GFF6905at 41.579 kb on + strand, within GFF6905at 41.580 kb on - strand, within GFF6905at 42.084 kb on + strand, within GFF6906at 42.084 kb on + strand, within GFF6906at 42.084 kb on + strand, within GFF6906at 42.085 kb on - strand, within GFF6906at 42.085 kb on - strand, within GFF6906at 42.262 kb on + strandat 42.262 kb on + strandat 42.262 kb on + strandat 42.263 kb on - strandat 42.263 kb on - strandat 42.263 kb on - strandat 42.264 kb on + strandat 42.264 kb on + strandat 42.398 kb on - strand, within GFF6907

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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39,017 + +0.4
39,018 - +0.8
39,020 + -0.2
39,020 + -0.6
39,020 + +0.7
39,020 + -0.3
39,021 - +1.3
39,021 - -0.2
39,021 - +0.1
39,263 + GFF6904 0.26 -0.4
39,264 - GFF6904 0.26 +0.6
39,264 - GFF6904 0.26 +0.6
39,266 + GFF6904 0.26 -1.4
39,266 + GFF6904 0.26 -1.0
39,266 + GFF6904 0.26 -1.6
39,267 - GFF6904 0.26 -0.7
39,267 - GFF6904 0.26 +0.9
39,267 - GFF6904 0.26 +0.9
39,267 - GFF6904 0.26 -0.1
39,267 - GFF6904 0.26 +0.5
39,398 + GFF6904 0.39 -0.6
39,398 + GFF6904 0.39 -0.9
39,398 + GFF6904 0.39 +0.9
39,399 - GFF6904 0.39 -0.9
39,399 - GFF6904 0.39 +2.1
39,689 + GFF6904 0.68 -0.8
39,689 + GFF6904 0.68 +0.7
40,010 + -1.0
40,010 + +0.1
40,010 + +0.0
40,010 + -0.1
40,011 - -0.7
40,011 - -2.0
40,011 - +0.3
40,011 - -0.6
40,015 + +0.5
40,016 - -0.0
40,016 - +0.2
40,016 - -0.6
40,222 + GFF6905 0.12 +0.0
40,222 + GFF6905 0.12 -0.6
40,223 - GFF6905 0.12 +0.9
40,223 - GFF6905 0.12 -1.3
40,369 + GFF6905 0.20 -0.3
40,369 + GFF6905 0.20 -0.0
40,369 + GFF6905 0.20 -0.7
40,472 - GFF6905 0.26 -1.6
40,480 + GFF6905 0.26 -0.2
40,480 + GFF6905 0.26 -0.8
40,480 + GFF6905 0.26 +0.3
40,481 - GFF6905 0.26 -1.0
40,481 - GFF6905 0.26 -0.5
40,481 - GFF6905 0.26 -1.1
40,552 + GFF6905 0.30 +0.1
40,883 - GFF6905 0.49 +1.5
40,883 - GFF6905 0.49 -1.1
40,927 - GFF6905 0.52 -0.4
40,999 + GFF6905 0.56 -0.6
40,999 + GFF6905 0.56 -1.6
40,999 + GFF6905 0.56 +0.2
41,000 - GFF6905 0.56 -0.4
41,000 - GFF6905 0.56 -0.2
41,000 - GFF6905 0.56 +0.3
41,579 + GFF6905 0.88 +0.1
41,580 - GFF6905 0.88 -1.5
42,084 + GFF6906 0.69 -1.1
42,084 + GFF6906 0.69 -0.9
42,084 + GFF6906 0.69 -0.2
42,085 - GFF6906 0.69 -0.8
42,085 - GFF6906 0.69 -1.7
42,262 + -0.7
42,262 + +1.0
42,262 + -0.6
42,263 - -0.3
42,263 - +0.3
42,263 - +0.6
42,264 + +0.6
42,264 + +0.3
42,398 - GFF6907 0.23 -0.1

Or see this region's nucleotide sequence