Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6846 and GFF6847 overlap by 4 nucleotides GFF6847 and GFF6848 are separated by 10 nucleotides GFF6848 and GFF6849 are separated by 12 nucleotides
GFF6846 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 28,003 to 29,865
GFF6846
GFF6847 - Ferric siderophore transport system, periplasmic binding protein TonB, at 29,862 to 30,599
GFF6847
GFF6848 - Biopolymer transport protein ExbD/TolR, at 30,610 to 31,023
GFF6848
GFF6849 - MotA/TolQ/ExbB proton channel family protein, at 31,036 to 32,844
GFF6849
Position (kb) 30
31
32 Strain fitness (log2 ratio) -2
-1
0
1
2 at 30.118 kb on + strand, within GFF6847 at 30.118 kb on + strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.119 kb on - strand, within GFF6847 at 30.128 kb on - strand, within GFF6847 at 30.465 kb on + strand, within GFF6847 at 30.465 kb on + strand, within GFF6847 at 30.466 kb on - strand, within GFF6847 at 30.466 kb on - strand, within GFF6847 at 30.692 kb on + strand, within GFF6848 at 30.693 kb on - strand, within GFF6848 at 31.169 kb on + strand at 31.170 kb on - strand at 31.212 kb on + strand at 31.328 kb on + strand, within GFF6849 at 31.328 kb on + strand, within GFF6849 at 31.328 kb on + strand, within GFF6849 at 31.328 kb on + strand, within GFF6849 at 31.328 kb on + strand, within GFF6849 at 31.328 kb on + strand, within GFF6849 at 31.329 kb on - strand, within GFF6849 at 31.329 kb on - strand, within GFF6849 at 31.449 kb on - strand, within GFF6849 at 31.460 kb on + strand, within GFF6849 at 31.460 kb on + strand, within GFF6849 at 31.460 kb on + strand, within GFF6849 at 31.505 kb on + strand, within GFF6849 at 31.505 kb on + strand, within GFF6849 at 31.505 kb on + strand, within GFF6849 at 31.506 kb on - strand, within GFF6849 at 31.640 kb on + strand, within GFF6849 at 31.857 kb on + strand, within GFF6849 at 31.857 kb on + strand, within GFF6849 at 31.858 kb on - strand, within GFF6849 at 31.858 kb on - strand, within GFF6849 at 31.992 kb on + strand, within GFF6849 at 31.993 kb on - strand, within GFF6849 at 31.993 kb on - strand, within GFF6849
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 30,118 + GFF6847 0.35 +0.2 30,118 + GFF6847 0.35 +0.3 30,119 - GFF6847 0.35 -1.9 30,119 - GFF6847 0.35 -0.6 30,119 - GFF6847 0.35 +0.2 30,119 - GFF6847 0.35 +0.1 30,119 - GFF6847 0.35 -0.5 30,119 - GFF6847 0.35 +0.6 30,128 - GFF6847 0.36 -2.0 30,465 + GFF6847 0.82 +0.5 30,465 + GFF6847 0.82 +0.3 30,466 - GFF6847 0.82 +2.5 30,466 - GFF6847 0.82 +0.7 30,692 + GFF6848 0.20 -0.7 30,693 - GFF6848 0.20 -0.4 31,169 + -0.9 31,170 - -0.3 31,212 + -0.9 31,328 + GFF6849 0.16 -0.0 31,328 + GFF6849 0.16 +0.4 31,328 + GFF6849 0.16 -0.2 31,328 + GFF6849 0.16 +0.7 31,328 + GFF6849 0.16 -0.7 31,328 + GFF6849 0.16 -0.5 31,329 - GFF6849 0.16 -0.9 31,329 - GFF6849 0.16 -1.0 31,449 - GFF6849 0.23 -0.3 31,460 + GFF6849 0.23 +0.2 31,460 + GFF6849 0.23 +0.7 31,460 + GFF6849 0.23 +0.3 31,505 + GFF6849 0.26 +0.0 31,505 + GFF6849 0.26 -0.1 31,505 + GFF6849 0.26 -0.8 31,506 - GFF6849 0.26 +0.3 31,640 + GFF6849 0.33 +0.1 31,857 + GFF6849 0.45 -0.1 31,857 + GFF6849 0.45 -0.5 31,858 - GFF6849 0.45 +0.1 31,858 - GFF6849 0.45 +0.1 31,992 + GFF6849 0.53 -1.4 31,993 - GFF6849 0.53 -0.6 31,993 - GFF6849 0.53 +0.1
Or see this region's nucleotide sequence