Strain Fitness in Variovorax sp. SCN45 around GFF6556

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
51,124	+		GFF6554	0.29	+0.7
51,125	-		GFF6554	0.29	-0.3
51,167	-		GFF6554	0.37	+2.6
51,286	+		GFF6554	0.60	-0.4
51,286	+		GFF6554	0.60	+1.1
51,531	+				+0.3
51,866	+		GFF6555	0.89	+0.1
51,992	-				-0.4
51,994	+				-0.6
51,994	+				-2.6
51,994	+				+0.3
51,994	+				-0.4
51,994	+				+0.8
51,994	+				-0.6
51,994	+				+0.6
51,994	+				-0.3
51,994	+				-0.4
51,994	+				-0.8
51,995	-				-0.5
51,995	-				-0.3
51,995	-				-0.6
51,995	-				+0.1
51,995	-				-1.6
52,016	+				-0.5
52,016	+				-0.2
52,016	+				+0.1
52,017	-				+0.1
52,017	-				-0.6
52,239	+		GFF6556	0.64	-0.8
52,240	-		GFF6556	0.64	+0.1
52,240	-		GFF6556	0.64	-0.5
52,277	-		GFF6556	0.75	-0.1
52,284	+		GFF6556	0.77	-0.5
52,285	-		GFF6556	0.77	-0.9
52,285	-		GFF6556	0.77	-0.1
52,420	+				-0.2
52,420	+				-1.7
52,420	+				+0.6
52,527	+				+1.2
52,527	+				-0.4
52,590	+				-0.2
52,590	+				-0.5
52,591	-				-0.8
52,591	-				-2.5
52,591	-				-0.2
52,591	-				-0.3
52,698	+		GFF6557	0.15	-0.2
52,882	-		GFF6557	0.30	+0.1
52,929	+		GFF6557	0.33	+0.1
52,929	+		GFF6557	0.33	-0.0
52,930	-		GFF6557	0.33	-0.5
52,930	-		GFF6557	0.33	-0.8
52,962	+		GFF6557	0.36	-0.1
52,962	+		GFF6557	0.36	+0.3
52,962	+		GFF6557	0.36	-0.8
52,962	+		GFF6557	0.36	-0.5
52,963	-		GFF6557	0.36	-0.9
53,272	+		GFF6557	0.60	+0.4
53,272	+		GFF6557	0.60	+0.1