Strain Fitness in Variovorax sp. SCN45 around GFF6318

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
106,240	+		GFF6317	0.37	+0.1
106,240	+		GFF6317	0.37	+0.2
106,240	+		GFF6317	0.37	-0.4
106,241	-		GFF6317	0.37	-0.2
106,241	-		GFF6317	0.37	+0.3
106,241	-		GFF6317	0.37	+0.1
106,241	-		GFF6317	0.37	-0.2
106,264	+		GFF6317	0.39	-0.0
106,264	+		GFF6317	0.39	+0.2
106,265	-		GFF6317	0.39	-0.5
106,265	-		GFF6317	0.39	+0.6
106,339	+		GFF6317	0.44	-0.9
106,339	+		GFF6317	0.44	-0.0
106,339	+		GFF6317	0.44	-0.6
106,339	+		GFF6317	0.44	+0.3
106,339	+		GFF6317	0.44	-0.3
106,339	+		GFF6317	0.44	-0.1
106,339	+		GFF6317	0.44	-1.1
106,339	+		GFF6317	0.44	+0.2
106,339	+		GFF6317	0.44	+0.0
106,339	+		GFF6317	0.44	-0.7
106,339	+		GFF6317	0.44	+1.3
106,339	+		GFF6317	0.44	-0.7
106,339	+		GFF6317	0.44	-0.3
106,339	+		GFF6317	0.44	-0.3
106,339	+		GFF6317	0.44	-1.1
106,339	+		GFF6317	0.44	+0.4
106,340	-		GFF6317	0.45	-0.3
106,340	-		GFF6317	0.45	+0.8
106,340	-		GFF6317	0.45	-0.1
106,340	-		GFF6317	0.45	-1.0
106,340	-		GFF6317	0.45	-0.1
106,340	-		GFF6317	0.45	-0.3
106,340	-		GFF6317	0.45	+0.1
106,340	-		GFF6317	0.45	+1.5
106,340	-		GFF6317	0.45	-1.1
106,340	-		GFF6317	0.45	-0.6
106,342	+		GFF6317	0.45	-0.3
106,342	+		GFF6317	0.45	-0.1
106,342	+		GFF6317	0.45	-0.0
106,342	+		GFF6317	0.45	+1.6
106,342	+		GFF6317	0.45	+0.2
106,342	+		GFF6317	0.45	-0.4
106,342	+		GFF6317	0.45	+0.1
106,342	+		GFF6317	0.45	-0.5
106,342	+		GFF6317	0.45	-0.7
106,342	+		GFF6317	0.45	-0.5
106,342	+		GFF6317	0.45	+0.9
106,342	+		GFF6317	0.45	-0.1
106,342	+		GFF6317	0.45	-0.7
106,342	+		GFF6317	0.45	-0.2
106,342	+		GFF6317	0.45	+0.1
106,342	+		GFF6317	0.45	-0.1
106,342	+		GFF6317	0.45	-1.4
106,343	-		GFF6317	0.45	-1.7
106,343	-		GFF6317	0.45	-0.0
106,343	-		GFF6317	0.45	-0.8
106,343	-		GFF6317	0.45	+0.3
106,343	-		GFF6317	0.45	+0.3
106,343	-		GFF6317	0.45	-0.7
106,384	+		GFF6317	0.48	-0.0
106,684	+		GFF6317	0.71	+0.5
106,684	+		GFF6317	0.71	+0.6
106,685	-		GFF6317	0.71	-1.1
106,792	+		GFF6317	0.79	-0.6
106,792	+		GFF6317	0.79	+0.5
106,792	+		GFF6317	0.79	-0.8
106,793	-		GFF6317	0.79	+0.1
106,793	-		GFF6317	0.79	-0.3
106,793	-		GFF6317	0.79	+0.3
106,894	+		GFF6317	0.87	+0.7
106,894	+		GFF6317	0.87	-1.4
106,894	+		GFF6317	0.87	-0.3
106,894	+		GFF6317	0.87	-0.5
106,894	+		GFF6317	0.87	-0.7
106,894	+		GFF6317	0.87	+0.7
106,894	+		GFF6317	0.87	-0.2
106,894	+		GFF6317	0.87	-1.2
106,895	-		GFF6317	0.87	-0.4
106,895	-		GFF6317	0.87	-0.4
106,895	-		GFF6317	0.87	+1.3
106,895	-		GFF6317	0.87	+1.9
106,895	-		GFF6317	0.87	-2.2
106,895	-		GFF6317	0.87	-1.0
106,966	+				-1.2
107,171	+				-0.1
107,172	-				-0.6
107,172	-				+0.5
107,172	-				+1.6
107,172	-				-0.2
107,172	-				-1.2
107,179	+				-0.5
107,179	+				+0.3
107,179	+				-0.6
107,179	+				-0.3
107,179	+				+0.1
107,179	+				+0.1
107,179	+				+1.2
107,179	+				-0.0
107,179	+				-0.9
107,179	+				-0.1
107,179	+				+0.2
107,180	-				+1.5
107,180	-				-0.1
107,180	-				+0.8
107,180	-				-0.5
107,180	-				-0.9
107,180	-				+1.2
107,180	-				+2.3
107,180	-				-0.3
107,180	-				-0.6
107,285	+				-0.1
107,285	+				+0.9
107,286	-				-0.6
107,286	-				-2.1
107,306	+				-0.1
107,306	+				-0.5
107,306	+				+0.6
107,306	+				-1.0
107,306	+				-0.5
107,306	+				+0.1
107,306	+				+1.6
107,307	-				+0.0
107,307	-				-0.9
107,307	-				+0.1
107,307	-				-0.7
107,307	-				-2.0
107,492	+		GFF6318	0.19	+0.5
107,492	+		GFF6318	0.19	+0.0
107,510	+		GFF6318	0.20	-0.5
107,510	+		GFF6318	0.20	-1.8
107,510	+		GFF6318	0.20	+0.2
107,510	+		GFF6318	0.20	-0.7
107,510	+		GFF6318	0.20	-0.6
107,510	+		GFF6318	0.20	+0.3
107,510	+		GFF6318	0.20	-0.3
107,510	+		GFF6318	0.20	-0.7
107,510	+		GFF6318	0.20	-0.7
107,510	+		GFF6318	0.20	+0.4
107,510	+		GFF6318	0.20	+0.1
107,510	+		GFF6318	0.20	+0.6
107,510	+		GFF6318	0.20	-0.4
107,510	+		GFF6318	0.20	+0.4
107,511	-		GFF6318	0.20	+0.0
107,511	-		GFF6318	0.20	-0.3
107,511	-		GFF6318	0.20	+2.3
107,511	-		GFF6318	0.20	-0.2
107,511	-		GFF6318	0.20	-0.1
107,511	-		GFF6318	0.20	+0.3
107,511	-		GFF6318	0.20	-0.3
107,511	-		GFF6318	0.20	-0.9
107,511	-		GFF6318	0.20	-0.5
107,511	-		GFF6318	0.20	+0.7
107,511	-		GFF6318	0.20	-0.1
107,511	-		GFF6318	0.20	-0.5
107,511	-		GFF6318	0.20	-0.7
107,511	-		GFF6318	0.20	+1.0
107,780	+		GFF6318	0.38	-0.3
107,822	+		GFF6318	0.41	-1.4
107,822	+		GFF6318	0.41	+0.7
107,822	+		GFF6318	0.41	+0.6
107,822	+		GFF6318	0.41	+0.2
107,823	-		GFF6318	0.41	-0.8
107,823	-		GFF6318	0.41	+1.7
107,823	-		GFF6318	0.41	-0.0
107,823	-		GFF6318	0.41	-1.9
107,823	-		GFF6318	0.41	-0.3
107,823	-		GFF6318	0.41	-0.9
107,825	+		GFF6318	0.41	+0.1
108,080	+		GFF6318	0.58	+1.0
108,119	+		GFF6318	0.60	+0.5
108,119	+		GFF6318	0.60	+0.6
108,119	+		GFF6318	0.60	+1.1
108,119	+		GFF6318	0.60	+0.3
108,120	-		GFF6318	0.60	-0.5
108,120	-		GFF6318	0.60	+0.5
108,120	-		GFF6318	0.60	-0.7
108,146	+		GFF6318	0.62	+0.8
108,146	+		GFF6318	0.62	-0.0
108,146	+		GFF6318	0.62	-1.2
108,146	+		GFF6318	0.62	+1.3
108,146	+		GFF6318	0.62	-2.2
108,146	+		GFF6318	0.62	-1.4
108,146	+		GFF6318	0.62	-0.2
108,146	+		GFF6318	0.62	+1.1
108,146	+		GFF6318	0.62	+0.5
108,146	+		GFF6318	0.62	+0.6
108,146	+		GFF6318	0.62	-0.7
108,146	+		GFF6318	0.62	+0.3
108,146	+		GFF6318	0.62	-0.2
108,147	-		GFF6318	0.62	-2.2
108,147	-		GFF6318	0.62	+0.5
108,147	-		GFF6318	0.62	-1.0
108,147	-		GFF6318	0.62	-0.5
108,147	-		GFF6318	0.62	+0.9
108,147	-		GFF6318	0.62	-0.6
108,147	-		GFF6318	0.62	-0.9
108,147	-		GFF6318	0.62	-0.7
108,147	-		GFF6318	0.62	-0.8
108,147	-		GFF6318	0.62	+1.9
108,147	-		GFF6318	0.62	+1.4
108,147	-		GFF6318	0.62	+0.1
108,147	-		GFF6318	0.62	-0.2
108,161	+		GFF6318	0.63	+0.0
108,161	+		GFF6318	0.63	-1.2
108,161	+		GFF6318	0.63	-0.5
108,161	+		GFF6318	0.63	-0.4
108,161	+		GFF6318	0.63	+0.1
108,161	+		GFF6318	0.63	-0.2
108,161	+		GFF6318	0.63	-0.2
108,161	+		GFF6318	0.63	-0.4
108,161	+		GFF6318	0.63	-0.4
108,161	+		GFF6318	0.63	+0.9
108,161	+		GFF6318	0.63	+0.6
108,161	+		GFF6318	0.63	+0.7
108,161	+		GFF6318	0.63	+1.7
108,161	+		GFF6318	0.63	+0.5
108,161	+		GFF6318	0.63	-0.1
108,161	+		GFF6318	0.63	+0.1
108,161	+		GFF6318	0.63	-1.1
108,161	+		GFF6318	0.63	-0.1
108,162	-		GFF6318	0.63	+0.3
108,162	-		GFF6318	0.63	-0.2
108,162	-		GFF6318	0.63	-0.1
108,162	-		GFF6318	0.63	-0.9
108,162	-		GFF6318	0.63	-0.6
108,162	-		GFF6318	0.63	-0.4
108,162	-		GFF6318	0.63	-0.1
108,162	-		GFF6318	0.63	+1.7
108,162	-		GFF6318	0.63	+0.8
108,162	-		GFF6318	0.63	-0.2
108,162	-		GFF6318	0.63	-0.1
108,162	-		GFF6318	0.63	-0.5
108,162	-		GFF6318	0.63	+0.5
108,162	-		GFF6318	0.63	-1.1
108,162	-		GFF6318	0.63	-1.4
108,162	-		GFF6318	0.63	+1.2
108,162	-		GFF6318	0.63	+0.2
108,162	-		GFF6318	0.63	+0.3
108,162	-		GFF6318	0.63	-0.7
108,162	-		GFF6318	0.63	-0.1
108,162	-		GFF6318	0.63	-0.4
108,162	-		GFF6318	0.63	-0.3
108,162	-		GFF6318	0.63	+0.5
108,162	-		GFF6318	0.63	-1.3
108,162	-		GFF6318	0.63	-0.4
108,162	-		GFF6318	0.63	-0.5
108,162	-		GFF6318	0.63	-0.7
108,162	-		GFF6318	0.63	+0.1
108,162	-		GFF6318	0.63	+0.8
108,162	-		GFF6318	0.63	-0.9
108,162	-		GFF6318	0.63	+0.6
108,162	-		GFF6318	0.63	+0.2
108,162	-		GFF6318	0.63	-0.4
108,162	-		GFF6318	0.63	+0.4
108,713	+				-1.1
108,714	-				+0.3
108,755	+				+2.2
108,765	-				+0.7
109,078	+		GFF6319	0.25	+0.7
109,078	+		GFF6319	0.25	+0.3
109,078	+		GFF6319	0.25	-0.6
109,078	+		GFF6319	0.25	-0.3
109,079	-		GFF6319	0.25	+0.1
109,240	+		GFF6319	0.39	+0.5
109,240	+		GFF6319	0.39	-0.2
109,241	-		GFF6319	0.39	+0.1
109,241	-		GFF6319	0.39	-0.3
109,241	-		GFF6319	0.39	-0.6
109,327	+		GFF6319	0.47	-0.1
109,327	+		GFF6319	0.47	+0.3
109,327	+		GFF6319	0.47	+0.1
109,327	+		GFF6319	0.47	+0.3
109,328	-		GFF6319	0.47	+0.3
109,328	-		GFF6319	0.47	-1.1
109,328	-		GFF6319	0.47	-0.4
109,328	-		GFF6319	0.47	+0.0
109,492	+		GFF6319	0.61	-0.5
109,492	+		GFF6319	0.61	-0.5
109,492	+		GFF6319	0.61	+2.6
109,492	+		GFF6319	0.61	+1.3
109,492	+		GFF6319	0.61	-0.2
109,492	+		GFF6319	0.61	+0.2
109,492	+		GFF6319	0.61	+0.3
109,492	+		GFF6319	0.61	-0.7
109,492	+		GFF6319	0.61	-0.5
109,492	+		GFF6319	0.61	-0.7
109,492	+		GFF6319	0.61	-1.4
109,492	+		GFF6319	0.61	+0.1
109,492	+		GFF6319	0.61	+1.9
109,492	+		GFF6319	0.61	-0.8
109,492	+		GFF6319	0.61	+0.0
109,492	+		GFF6319	0.61	+1.3
109,492	+		GFF6319	0.61	-0.8
109,492	+		GFF6319	0.61	-0.7
109,492	+		GFF6319	0.61	-0.9
109,492	+		GFF6319	0.61	+0.4
109,493	-		GFF6319	0.61	-0.3
109,493	-		GFF6319	0.61	-1.2
109,493	-		GFF6319	0.61	-0.3
109,493	-		GFF6319	0.61	+0.0
109,493	-		GFF6319	0.61	-0.5
109,493	-		GFF6319	0.61	+0.9
109,493	-		GFF6319	0.61	-0.4
109,493	-		GFF6319	0.61	+0.3
109,493	-		GFF6319	0.61	-0.4
109,493	-		GFF6319	0.61	+2.7
109,493	-		GFF6319	0.61	-0.8
109,493	-		GFF6319	0.61	-0.9
109,493	-		GFF6319	0.61	+0.2
109,493	-		GFF6319	0.61	-1.2
109,493	-		GFF6319	0.61	-0.8
109,493	-		GFF6319	0.61	+0.7
109,493	-		GFF6319	0.61	+0.9
109,493	-		GFF6319	0.61	-1.1
109,493	-		GFF6319	0.61	+0.0
109,561	+		GFF6319	0.67	+0.1
109,561	+		GFF6319	0.67	-0.1
109,561	+		GFF6319	0.67	+0.6
109,561	+		GFF6319	0.67	+0.1
109,561	+		GFF6319	0.67	-0.8
109,561	+		GFF6319	0.67	+0.2
109,561	+		GFF6319	0.67	-1.0
109,562	-		GFF6319	0.67	+1.3
109,562	-		GFF6319	0.67	+1.5
109,562	-		GFF6319	0.67	+0.2
109,562	-		GFF6319	0.67	-0.1
109,562	-		GFF6319	0.67	-0.3
109,562	-		GFF6319	0.67	-1.6
109,562	-		GFF6319	0.67	-0.4
109,562	-		GFF6319	0.67	-0.4
109,562	-		GFF6319	0.67	-0.0
109,684	+		GFF6319	0.78	+0.9
109,685	-		GFF6319	0.78	+0.1
109,685	-		GFF6319	0.78	+0.6
109,685	-		GFF6319	0.78	-0.9