Strain Fitness in Variovorax sp. SCN45 around GFF6143

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6142 and GFF6143 overlap by 4 nucleotidesGFF6143 and GFF6144 are separated by 178 nucleotides GFF6142 - 2-aminoethylphosphonate ABC transporter permease protein, at 45,290 to 47,023 GFF6142 GFF6143 - 2-aminoethylphosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1), at 47,020 to 48,156 GFF6143 GFF6144 - 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 48,335 to 49,375 GFF6144 Position (kb) 47 48 49Strain fitness (log2 ratio) -1 0 1at 46.032 kb on + strand, within GFF6142at 46.129 kb on - strand, within GFF6142at 46.179 kb on + strand, within GFF6142at 46.180 kb on - strand, within GFF6142at 46.341 kb on + strand, within GFF6142at 46.341 kb on + strand, within GFF6142at 46.342 kb on - strand, within GFF6142at 46.377 kb on + strand, within GFF6142at 46.450 kb on - strand, within GFF6142at 46.515 kb on + strand, within GFF6142at 46.548 kb on + strand, within GFF6142at 46.548 kb on + strand, within GFF6142at 46.549 kb on - strand, within GFF6142at 46.711 kb on - strand, within GFF6142at 46.809 kb on + strand, within GFF6142at 46.810 kb on - strand, within GFF6142at 47.282 kb on + strand, within GFF6143at 47.441 kb on + strand, within GFF6143at 47.441 kb on + strand, within GFF6143at 47.442 kb on - strand, within GFF6143at 47.717 kb on + strand, within GFF6143at 47.718 kb on - strand, within GFF6143at 47.718 kb on - strand, within GFF6143at 47.855 kb on + strand, within GFF6143at 47.855 kb on + strand, within GFF6143at 48.151 kb on - strandat 48.336 kb on + strandat 48.336 kb on + strandat 48.441 kb on + strand, within GFF6144at 48.441 kb on + strand, within GFF6144at 48.441 kb on + strand, within GFF6144at 48.442 kb on - strand, within GFF6144at 48.442 kb on - strand, within GFF6144at 48.483 kb on + strand, within GFF6144at 48.750 kb on + strand, within GFF6144at 48.751 kb on - strand, within GFF6144at 48.751 kb on - strand, within GFF6144at 48.783 kb on + strand, within GFF6144at 48.783 kb on + strand, within GFF6144at 48.783 kb on + strand, within GFF6144at 48.784 kb on - strand, within GFF6144at 48.784 kb on - strand, within GFF6144at 48.784 kb on - strand, within GFF6144at 48.784 kb on - strand, within GFF6144at 48.837 kb on + strand, within GFF6144at 48.838 kb on - strand, within GFF6144at 48.885 kb on + strand, within GFF6144at 48.885 kb on + strand, within GFF6144at 48.885 kb on + strand, within GFF6144at 48.885 kb on + strand, within GFF6144at 48.886 kb on - strand, within GFF6144at 49.020 kb on + strand, within GFF6144at 49.020 kb on + strand, within GFF6144at 49.020 kb on + strand, within GFF6144at 49.057 kb on - strand, within GFF6144

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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46,032 + GFF6142 0.43 -0.1
46,129 - GFF6142 0.48 -0.6
46,179 + GFF6142 0.51 +0.6
46,180 - GFF6142 0.51 -1.2
46,341 + GFF6142 0.61 -0.1
46,341 + GFF6142 0.61 +0.2
46,342 - GFF6142 0.61 -0.4
46,377 + GFF6142 0.63 -0.5
46,450 - GFF6142 0.67 +0.1
46,515 + GFF6142 0.71 -0.7
46,548 + GFF6142 0.73 +0.5
46,548 + GFF6142 0.73 -0.7
46,549 - GFF6142 0.73 +0.7
46,711 - GFF6142 0.82 +0.6
46,809 + GFF6142 0.88 -0.3
46,810 - GFF6142 0.88 -0.2
47,282 + GFF6143 0.23 -1.7
47,441 + GFF6143 0.37 +0.3
47,441 + GFF6143 0.37 +0.0
47,442 - GFF6143 0.37 -1.2
47,717 + GFF6143 0.61 -0.7
47,718 - GFF6143 0.61 -0.2
47,718 - GFF6143 0.61 -0.4
47,855 + GFF6143 0.73 -1.6
47,855 + GFF6143 0.73 +0.4
48,151 - -0.1
48,336 + -0.1
48,336 + -0.3
48,441 + GFF6144 0.10 -0.2
48,441 + GFF6144 0.10 +0.6
48,441 + GFF6144 0.10 -0.5
48,442 - GFF6144 0.10 -0.1
48,442 - GFF6144 0.10 +0.1
48,483 + GFF6144 0.14 -0.3
48,750 + GFF6144 0.40 -0.4
48,751 - GFF6144 0.40 -0.4
48,751 - GFF6144 0.40 -0.2
48,783 + GFF6144 0.43 -0.5
48,783 + GFF6144 0.43 -1.0
48,783 + GFF6144 0.43 -0.2
48,784 - GFF6144 0.43 -0.1
48,784 - GFF6144 0.43 -0.9
48,784 - GFF6144 0.43 -0.7
48,784 - GFF6144 0.43 -0.2
48,837 + GFF6144 0.48 -0.9
48,838 - GFF6144 0.48 -0.8
48,885 + GFF6144 0.53 +0.5
48,885 + GFF6144 0.53 +0.4
48,885 + GFF6144 0.53 -0.1
48,885 + GFF6144 0.53 +0.0
48,886 - GFF6144 0.53 -0.2
49,020 + GFF6144 0.66 -0.3
49,020 + GFF6144 0.66 -0.5
49,020 + GFF6144 0.66 +0.0
49,057 - GFF6144 0.69 -0.3

Or see this region's nucleotide sequence