Strain Fitness in Variovorax sp. SCN45 around GFF6085

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
146,170	-				+1.0
146,170	-				-0.8
146,170	-				-0.0
146,170	-				-0.5
146,170	-				-0.9
146,182	+				+0.2
146,182	+				-0.2
146,183	-				-0.4
146,211	+		GFF6084	0.10	+1.7
146,211	+		GFF6084	0.10	-1.6
146,212	-		GFF6084	0.10	-0.2
146,212	-		GFF6084	0.10	-0.3
146,853	+		GFF6084	0.72	-0.7
146,853	+		GFF6084	0.72	+1.4
146,853	+		GFF6084	0.72	+0.7
146,854	-		GFF6084	0.72	-0.6
146,854	-		GFF6084	0.72	+1.0
146,854	-		GFF6084	0.72	+0.2
146,970	+		GFF6084	0.83	-0.1
146,971	-		GFF6084	0.83	-0.0
146,971	-		GFF6084	0.83	-0.0
146,971	-		GFF6084	0.83	+0.1
146,976	+		GFF6084	0.84	-0.7
146,976	+		GFF6084	0.84	+0.4
146,976	+		GFF6084	0.84	+0.7
146,977	-		GFF6084	0.84	-2.5
146,977	-		GFF6084	0.84	-0.9
147,009	+		GFF6084	0.87	+0.1
147,141	+				+1.1
147,250	-		GFF6085	0.19	-0.7
147,250	-		GFF6085	0.19	-1.6
147,269	+		GFF6085	0.22	+0.2
147,270	-		GFF6085	0.22	+0.7
147,270	-		GFF6085	0.22	-2.1
147,357	+		GFF6085	0.37	-1.0
147,358	-		GFF6085	0.37	-0.6
147,358	-		GFF6085	0.37	-0.4
147,462	+		GFF6085	0.55	-0.2
147,462	+		GFF6085	0.55	-0.3
147,462	+		GFF6085	0.55	-0.7
147,462	+		GFF6085	0.55	-1.2
147,462	+		GFF6085	0.55	-0.7
147,462	+		GFF6085	0.55	+1.7
147,463	-		GFF6085	0.55	+0.4
147,463	-		GFF6085	0.55	-0.1
147,463	-		GFF6085	0.55	+1.7
147,463	-		GFF6085	0.55	-0.5
147,463	-		GFF6085	0.55	-0.6
147,463	-		GFF6085	0.55	+0.7
147,474	+		GFF6085	0.57	-0.3
147,475	-		GFF6085	0.57	-1.1
147,475	-		GFF6085	0.57	-0.3
147,475	-		GFF6085	0.57	-0.9
147,475	-		GFF6085	0.57	+0.1
147,475	-		GFF6085	0.57	-0.5
147,475	-		GFF6085	0.57	+0.5
147,475	-		GFF6085	0.57	-0.1
147,588	+		GFF6085	0.76	+1.0
147,588	+		GFF6085	0.76	-0.4
147,588	+		GFF6085	0.76	-0.2
147,588	+		GFF6085	0.76	-0.8
147,589	-		GFF6085	0.76	-1.1
147,589	-		GFF6085	0.76	-1.1
147,589	-		GFF6085	0.76	-1.1
147,589	-		GFF6085	0.76	-0.4
147,750	+				-1.1
147,750	+				-2.2
147,750	+				+0.1
147,838	+				-0.9
147,839	-				-1.6
147,839	-				+0.7
147,839	-				-0.6
147,839	-				+0.2
147,923	+		GFF6086	0.13	-0.1
147,923	+		GFF6086	0.13	-0.1
147,924	-		GFF6086	0.13	-1.1
147,924	-		GFF6086	0.13	-0.1
147,924	-		GFF6086	0.13	-1.8
147,924	-		GFF6086	0.13	+0.1
148,020	-		GFF6086	0.25	-0.6
148,322	+		GFF6086	0.60	+0.0
148,322	+		GFF6086	0.60	-1.6
148,322	+		GFF6086	0.60	+0.5
148,322	+		GFF6086	0.60	-1.3
148,323	-		GFF6086	0.60	-1.3
148,323	-		GFF6086	0.60	-1.0
148,323	-		GFF6086	0.60	-1.3
148,323	-		GFF6086	0.60	-0.7
148,643	+				-1.0
148,643	+				+0.4
148,644	-				-0.7
148,705	+				+0.3
148,706	-				-1.1
148,715	+		GFF6087	0.11	-1.0
148,716	-		GFF6087	0.11	-0.7