Strain Fitness in Variovorax sp. SCN45 around GFF587

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF586 and GFF587 are separated by 32 nucleotidesGFF587 and GFF588 are separated by 85 nucleotidesGFF588 and GFF589 are separated by 70 nucleotides GFF586 - Pirin, at 633,610 to 634,533 GFF586 GFF587 - Multimeric flavodoxin WrbA, at 634,566 to 635,117 GFF587 GFF588 - putative membrane protein, at 635,203 to 635,622 GFF588 GFF589 - Pirin, at 635,693 to 636,394 GFF589 Position (kb) 634 635 636Strain fitness (log2 ratio) -2 -1 0 1 2 3at 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.630 kb on + strandat 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.926 kb on + strand, within GFF586at 633.926 kb on + strand, within GFF586at 633.927 kb on - strand, within GFF586at 633.927 kb on - strand, within GFF586at 633.995 kb on + strand, within GFF586at 633.995 kb on + strand, within GFF586at 633.995 kb on + strand, within GFF586at 633.996 kb on - strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.567 kb on + strandat 634.568 kb on - strandat 634.688 kb on - strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.879 kb on + strand, within GFF587at 634.880 kb on - strand, within GFF587at 634.880 kb on - strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.953 kb on + strand, within GFF587at 634.953 kb on + strand, within GFF587at 634.953 kb on + strand, within GFF587at 634.954 kb on - strand, within GFF587at 634.954 kb on - strand, within GFF587at 634.954 kb on - strand, within GFF587at 634.954 kb on - strand, within GFF587at 635.122 kb on + strandat 635.122 kb on + strandat 635.122 kb on + strandat 635.122 kb on + strandat 635.122 kb on + strandat 635.123 kb on - strandat 635.133 kb on + strandat 635.133 kb on + strandat 635.134 kb on - strandat 635.134 kb on - strandat 635.134 kb on - strandat 635.204 kb on + strandat 635.205 kb on - strandat 635.205 kb on - strandat 635.211 kb on + strandat 635.330 kb on + strand, within GFF588at 635.330 kb on + strand, within GFF588at 635.330 kb on + strand, within GFF588at 635.330 kb on + strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.407 kb on + strand, within GFF588at 635.407 kb on + strand, within GFF588at 635.407 kb on + strand, within GFF588at 635.408 kb on - strand, within GFF588at 635.492 kb on + strand, within GFF588at 635.492 kb on + strand, within GFF588at 635.493 kb on - strand, within GFF588at 635.493 kb on - strand, within GFF588at 635.493 kb on - strand, within GFF588at 635.549 kb on + strand, within GFF588at 635.549 kb on + strand, within GFF588at 635.549 kb on + strand, within GFF588at 635.549 kb on + strand, within GFF588at 635.549 kb on + strand, within GFF588at 635.550 kb on - strand, within GFF588at 635.550 kb on - strand, within GFF588at 635.550 kb on - strand, within GFF588at 635.550 kb on - strand, within GFF588at 635.656 kb on - strandat 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.836 kb on - strand, within GFF589at 635.836 kb on - strand, within GFF589at 635.836 kb on - strand, within GFF589at 635.836 kb on - strand, within GFF589at 635.836 kb on - strand, within GFF589at 635.898 kb on + strand, within GFF589at 635.899 kb on - strand, within GFF589at 635.899 kb on - strand, within GFF589at 635.899 kb on - strand, within GFF589at 636.007 kb on - strand, within GFF589

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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633,576 + -0.3
633,576 + +1.0
633,576 + +0.4
633,576 + -0.4
633,576 + -2.0
633,576 + -0.8
633,576 + -0.6
633,576 + -1.4
633,576 + +0.9
633,576 + +1.1
633,576 + -1.0
633,576 + +0.2
633,576 + -1.2
633,577 - +0.4
633,577 - +0.0
633,577 - +0.2
633,577 - -1.3
633,577 - +1.4
633,577 - +0.5
633,630 + +1.0
633,776 + GFF586 0.18 -2.3
633,776 + GFF586 0.18 -0.3
633,776 + GFF586 0.18 -1.2
633,776 + GFF586 0.18 -2.1
633,776 + GFF586 0.18 -0.3
633,777 - GFF586 0.18 -0.0
633,777 - GFF586 0.18 -1.7
633,777 - GFF586 0.18 +1.4
633,777 - GFF586 0.18 +0.6
633,777 - GFF586 0.18 +0.4
633,926 + GFF586 0.34 -0.8
633,926 + GFF586 0.34 -1.4
633,927 - GFF586 0.34 +1.0
633,927 - GFF586 0.34 -0.1
633,995 + GFF586 0.42 +0.3
633,995 + GFF586 0.42 +0.5
633,995 + GFF586 0.42 -0.8
633,996 - GFF586 0.42 -0.7
634,181 + GFF586 0.62 -0.4
634,181 + GFF586 0.62 -0.3
634,181 + GFF586 0.62 -0.8
634,181 + GFF586 0.62 -0.6
634,182 - GFF586 0.62 +0.3
634,182 - GFF586 0.62 -0.1
634,182 - GFF586 0.62 -0.0
634,182 - GFF586 0.62 +0.4
634,322 + GFF586 0.77 -0.4
634,322 + GFF586 0.77 +1.4
634,322 + GFF586 0.77 -0.8
634,322 + GFF586 0.77 +0.8
634,322 + GFF586 0.77 +0.4
634,322 + GFF586 0.77 -1.6
634,322 + GFF586 0.77 -0.4
634,322 + GFF586 0.77 -0.4
634,323 - GFF586 0.77 -0.8
634,323 - GFF586 0.77 -0.6
634,323 - GFF586 0.77 -0.0
634,323 - GFF586 0.77 -0.6
634,323 - GFF586 0.77 -1.3
634,567 + -0.4
634,568 - -1.1
634,688 - GFF587 0.22 -0.1
634,699 + GFF587 0.24 -0.7
634,699 + GFF587 0.24 -2.4
634,699 + GFF587 0.24 -0.2
634,699 + GFF587 0.24 -1.1
634,699 + GFF587 0.24 -0.9
634,699 + GFF587 0.24 +1.6
634,699 + GFF587 0.24 +0.3
634,699 + GFF587 0.24 -0.9
634,700 - GFF587 0.24 -0.0
634,700 - GFF587 0.24 -0.7
634,700 - GFF587 0.24 +2.8
634,700 - GFF587 0.24 -2.3
634,700 - GFF587 0.24 -1.0
634,700 - GFF587 0.24 -1.7
634,700 - GFF587 0.24 -1.2
634,700 - GFF587 0.24 +0.4
634,700 - GFF587 0.24 -0.5
634,700 - GFF587 0.24 +0.4
634,700 - GFF587 0.24 -0.3
634,795 + GFF587 0.41 +1.2
634,795 + GFF587 0.41 -1.0
634,795 + GFF587 0.41 +0.4
634,795 + GFF587 0.41 +0.4
634,795 + GFF587 0.41 -0.6
634,795 + GFF587 0.41 -0.6
634,795 + GFF587 0.41 +2.0
634,796 - GFF587 0.42 -0.4
634,796 - GFF587 0.42 +0.6
634,796 - GFF587 0.42 +0.6
634,796 - GFF587 0.42 -0.6
634,796 - GFF587 0.42 -1.2
634,879 + GFF587 0.57 -0.6
634,880 - GFF587 0.57 +0.2
634,880 - GFF587 0.57 -0.9
634,939 + GFF587 0.68 -1.1
634,939 + GFF587 0.68 -0.3
634,939 + GFF587 0.68 -1.1
634,939 + GFF587 0.68 -0.4
634,939 + GFF587 0.68 -1.8
634,939 + GFF587 0.68 -0.6
634,939 + GFF587 0.68 -2.3
634,939 + GFF587 0.68 -0.7
634,939 + GFF587 0.68 +0.5
634,939 + GFF587 0.68 +0.4
634,939 + GFF587 0.68 +1.8
634,940 - GFF587 0.68 +1.4
634,940 - GFF587 0.68 -1.2
634,940 - GFF587 0.68 +0.0
634,940 - GFF587 0.68 -1.4
634,940 - GFF587 0.68 -0.7
634,940 - GFF587 0.68 -0.5
634,940 - GFF587 0.68 -1.6
634,940 - GFF587 0.68 +0.8
634,940 - GFF587 0.68 -1.6
634,940 - GFF587 0.68 -0.3
634,940 - GFF587 0.68 +1.7
634,940 - GFF587 0.68 -0.7
634,940 - GFF587 0.68 -0.4
634,953 + GFF587 0.70 -1.8
634,953 + GFF587 0.70 -0.8
634,953 + GFF587 0.70 -0.1
634,954 - GFF587 0.70 -1.6
634,954 - GFF587 0.70 +0.0
634,954 - GFF587 0.70 -0.1
634,954 - GFF587 0.70 -0.1
635,122 + -0.0
635,122 + -0.3
635,122 + -2.5
635,122 + +1.4
635,122 + +0.1
635,123 - -0.3
635,133 + -0.5
635,133 + -1.0
635,134 - -1.1
635,134 - -0.0
635,134 - -0.1
635,204 + -0.8
635,205 - -0.1
635,205 - +0.2
635,211 + +0.2
635,330 + GFF588 0.30 +0.3
635,330 + GFF588 0.30 -1.0
635,330 + GFF588 0.30 -1.2
635,330 + GFF588 0.30 -0.7
635,331 - GFF588 0.30 +1.8
635,331 - GFF588 0.30 +0.4
635,331 - GFF588 0.30 +0.5
635,331 - GFF588 0.30 +0.4
635,331 - GFF588 0.30 +0.8
635,331 - GFF588 0.30 -0.6
635,331 - GFF588 0.30 -0.2
635,331 - GFF588 0.30 -0.1
635,331 - GFF588 0.30 +0.6
635,331 - GFF588 0.30 +1.4
635,407 + GFF588 0.49 -1.4
635,407 + GFF588 0.49 -2.2
635,407 + GFF588 0.49 -0.1
635,408 - GFF588 0.49 +1.8
635,492 + GFF588 0.69 -0.9
635,492 + GFF588 0.69 +0.5
635,493 - GFF588 0.69 -0.4
635,493 - GFF588 0.69 -2.2
635,493 - GFF588 0.69 -0.4
635,549 + GFF588 0.82 -0.7
635,549 + GFF588 0.82 -1.3
635,549 + GFF588 0.82 -0.6
635,549 + GFF588 0.82 +1.0
635,549 + GFF588 0.82 -2.0
635,550 - GFF588 0.83 -0.8
635,550 - GFF588 0.83 +0.1
635,550 - GFF588 0.83 +1.7
635,550 - GFF588 0.83 -0.5
635,656 - +0.5
635,835 + GFF589 0.20 +1.4
635,835 + GFF589 0.20 -0.0
635,835 + GFF589 0.20 -0.3
635,835 + GFF589 0.20 -1.2
635,835 + GFF589 0.20 +0.0
635,835 + GFF589 0.20 -1.2
635,835 + GFF589 0.20 -1.2
635,835 + GFF589 0.20 -0.9
635,835 + GFF589 0.20 -0.9
635,835 + GFF589 0.20 -0.3
635,836 - GFF589 0.20 -0.4
635,836 - GFF589 0.20 -0.6
635,836 - GFF589 0.20 +0.4
635,836 - GFF589 0.20 +0.8
635,836 - GFF589 0.20 -0.8
635,898 + GFF589 0.29 +0.1
635,899 - GFF589 0.29 -0.3
635,899 - GFF589 0.29 +1.1
635,899 - GFF589 0.29 -0.6
636,007 - GFF589 0.45 -0.3

Or see this region's nucleotide sequence