Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5734 and GFF5735 are separated by 95 nucleotides GFF5735 and GFF5736 are separated by 35 nucleotides
GFF5734 - Methyl-accepting chemotaxis sensor/transducer protein, at 106,719 to 108,449
GFF5734
GFF5735 - Flagellar hook-associated protein FlgK, at 108,545 to 110,509
GFF5735
GFF5736 - Flagellar hook-associated protein FlgL, at 110,545 to 111,756
GFF5736
Position (kb) 108
109
110
111 Strain fitness (log2 ratio) -2
-1
0
1
2 at 108.502 kb on + strand at 108.536 kb on + strand at 108.536 kb on + strand at 108.537 kb on - strand at 108.544 kb on + strand at 108.545 kb on - strand at 108.545 kb on - strand at 108.564 kb on - strand at 108.564 kb on - strand at 108.636 kb on - strand at 108.747 kb on - strand, within GFF5735 at 108.747 kb on - strand, within GFF5735 at 108.747 kb on - strand, within GFF5735 at 108.747 kb on - strand, within GFF5735 at 108.755 kb on + strand, within GFF5735 at 108.756 kb on - strand, within GFF5735 at 108.995 kb on + strand, within GFF5735 at 108.996 kb on - strand, within GFF5735 at 109.061 kb on + strand, within GFF5735 at 109.061 kb on + strand, within GFF5735 at 109.220 kb on + strand, within GFF5735 at 109.221 kb on - strand, within GFF5735 at 109.221 kb on - strand, within GFF5735 at 109.221 kb on - strand, within GFF5735 at 109.221 kb on - strand, within GFF5735 at 109.266 kb on - strand, within GFF5735 at 109.266 kb on - strand, within GFF5735 at 109.631 kb on + strand, within GFF5735 at 109.632 kb on - strand, within GFF5735 at 109.670 kb on + strand, within GFF5735 at 110.063 kb on + strand, within GFF5735 at 110.088 kb on - strand, within GFF5735 at 110.438 kb on + strand at 110.438 kb on + strand at 110.439 kb on - strand at 110.570 kb on - strand at 110.570 kb on - strand at 110.570 kb on - strand at 110.728 kb on + strand, within GFF5736 at 110.728 kb on + strand, within GFF5736 at 110.728 kb on + strand, within GFF5736 at 111.010 kb on + strand, within GFF5736 at 111.011 kb on - strand, within GFF5736 at 111.011 kb on - strand, within GFF5736 at 111.011 kb on - strand, within GFF5736 at 111.011 kb on - strand, within GFF5736 at 111.130 kb on - strand, within GFF5736 at 111.238 kb on + strand, within GFF5736 at 111.238 kb on + strand, within GFF5736 at 111.239 kb on - strand, within GFF5736 at 111.239 kb on - strand, within GFF5736 at 111.289 kb on + strand, within GFF5736 at 111.290 kb on - strand, within GFF5736
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 108,502 + -0.2 108,536 + -0.2 108,536 + -0.9 108,537 - +0.4 108,544 + -0.2 108,545 - +1.6 108,545 - +0.1 108,564 - -0.0 108,564 - -0.3 108,636 - -0.7 108,747 - GFF5735 0.10 -0.3 108,747 - GFF5735 0.10 -0.6 108,747 - GFF5735 0.10 -0.7 108,747 - GFF5735 0.10 -0.8 108,755 + GFF5735 0.11 -1.8 108,756 - GFF5735 0.11 +0.3 108,995 + GFF5735 0.23 +0.0 108,996 - GFF5735 0.23 -1.8 109,061 + GFF5735 0.26 +0.3 109,061 + GFF5735 0.26 -0.1 109,220 + GFF5735 0.34 -0.7 109,221 - GFF5735 0.34 -0.1 109,221 - GFF5735 0.34 -0.4 109,221 - GFF5735 0.34 -0.0 109,221 - GFF5735 0.34 -1.1 109,266 - GFF5735 0.37 +0.1 109,266 - GFF5735 0.37 +2.3 109,631 + GFF5735 0.55 -1.6 109,632 - GFF5735 0.55 -0.8 109,670 + GFF5735 0.57 +0.5 110,063 + GFF5735 0.77 +0.3 110,088 - GFF5735 0.79 -0.3 110,438 + -0.6 110,438 + +0.7 110,439 - -0.5 110,570 - -2.1 110,570 - +0.1 110,570 - -0.2 110,728 + GFF5736 0.15 -0.2 110,728 + GFF5736 0.15 -0.0 110,728 + GFF5736 0.15 +0.8 111,010 + GFF5736 0.38 +0.8 111,011 - GFF5736 0.38 -0.4 111,011 - GFF5736 0.38 +0.1 111,011 - GFF5736 0.38 +0.3 111,011 - GFF5736 0.38 -1.1 111,130 - GFF5736 0.48 -0.7 111,238 + GFF5736 0.57 -1.0 111,238 + GFF5736 0.57 -0.1 111,239 - GFF5736 0.57 +0.7 111,239 - GFF5736 0.57 -0.1 111,289 + GFF5736 0.61 -0.2 111,290 - GFF5736 0.61 +0.8
Or see this region's nucleotide sequence