Strain Fitness in Variovorax sp. SCN45 around GFF5458

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5457 and GFF5458 are separated by 28 nucleotidesGFF5458 and GFF5459 are separated by 5 nucleotides GFF5457 - L-threonate dehydrogenase (NAD+), at 87,896 to 88,768 GFF5457 GFF5458 - D-erythronate dehydrogenase (NAD+), at 88,797 to 89,813 GFF5458 GFF5459 - 3-oxo-tetronate kinase, at 89,819 to 91,090 GFF5459 Position (kb) 88 89 90Strain fitness (log2 ratio) -1 0 1at 88.217 kb on + strand, within GFF5457at 88.217 kb on + strand, within GFF5457at 88.346 kb on + strand, within GFF5457at 88.347 kb on - strand, within GFF5457at 88.481 kb on + strand, within GFF5457at 88.481 kb on + strand, within GFF5457at 88.481 kb on + strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.482 kb on - strand, within GFF5457at 88.556 kb on + strand, within GFF5457at 88.556 kb on + strand, within GFF5457at 88.557 kb on - strand, within GFF5457at 88.557 kb on - strand, within GFF5457at 88.557 kb on - strand, within GFF5457at 88.557 kb on - strand, within GFF5457at 88.691 kb on + strandat 88.692 kb on - strandat 89.263 kb on - strand, within GFF5458at 89.263 kb on - strand, within GFF5458at 89.263 kb on - strand, within GFF5458at 89.764 kb on - strandat 89.764 kb on - strandat 89.764 kb on - strandat 90.062 kb on + strand, within GFF5459at 90.062 kb on + strand, within GFF5459at 90.062 kb on + strand, within GFF5459at 90.062 kb on + strand, within GFF5459at 90.062 kb on + strand, within GFF5459at 90.062 kb on + strand, within GFF5459at 90.062 kb on + strand, within GFF5459at 90.062 kb on + strand, within GFF5459at 90.062 kb on + strand, within GFF5459at 90.063 kb on - strand, within GFF5459at 90.063 kb on - strand, within GFF5459at 90.063 kb on - strand, within GFF5459at 90.071 kb on + strand, within GFF5459at 90.071 kb on + strand, within GFF5459at 90.072 kb on - strand, within GFF5459at 90.163 kb on + strand, within GFF5459at 90.164 kb on - strand, within GFF5459at 90.164 kb on - strand, within GFF5459at 90.206 kb on + strand, within GFF5459at 90.206 kb on + strand, within GFF5459at 90.207 kb on - strand, within GFF5459at 90.207 kb on - strand, within GFF5459at 90.207 kb on - strand, within GFF5459at 90.207 kb on - strand, within GFF5459at 90.336 kb on - strand, within GFF5459at 90.753 kb on - strand, within GFF5459

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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88,217 + GFF5457 0.37 +1.0
88,217 + GFF5457 0.37 -0.6
88,346 + GFF5457 0.52 -0.4
88,347 - GFF5457 0.52 +0.2
88,481 + GFF5457 0.67 -0.5
88,481 + GFF5457 0.67 +0.0
88,481 + GFF5457 0.67 -0.6
88,482 - GFF5457 0.67 -0.1
88,482 - GFF5457 0.67 -0.6
88,482 - GFF5457 0.67 -0.3
88,482 - GFF5457 0.67 -0.6
88,482 - GFF5457 0.67 -1.0
88,482 - GFF5457 0.67 -0.6
88,482 - GFF5457 0.67 -1.1
88,482 - GFF5457 0.67 -1.1
88,482 - GFF5457 0.67 -0.4
88,556 + GFF5457 0.76 -0.5
88,556 + GFF5457 0.76 -0.6
88,557 - GFF5457 0.76 +0.4
88,557 - GFF5457 0.76 -0.4
88,557 - GFF5457 0.76 -0.9
88,557 - GFF5457 0.76 -0.9
88,691 + -1.7
88,692 - -0.6
89,263 - GFF5458 0.46 -0.1
89,263 - GFF5458 0.46 +0.7
89,263 - GFF5458 0.46 +1.1
89,764 - +0.4
89,764 - -0.2
89,764 - -1.0
90,062 + GFF5459 0.19 -0.5
90,062 + GFF5459 0.19 -0.5
90,062 + GFF5459 0.19 +0.0
90,062 + GFF5459 0.19 -0.1
90,062 + GFF5459 0.19 -1.3
90,062 + GFF5459 0.19 -0.5
90,062 + GFF5459 0.19 +0.7
90,062 + GFF5459 0.19 -0.1
90,062 + GFF5459 0.19 +0.3
90,063 - GFF5459 0.19 +0.6
90,063 - GFF5459 0.19 -0.7
90,063 - GFF5459 0.19 -0.1
90,071 + GFF5459 0.20 +0.3
90,071 + GFF5459 0.20 +0.1
90,072 - GFF5459 0.20 -0.6
90,163 + GFF5459 0.27 +0.8
90,164 - GFF5459 0.27 +0.0
90,164 - GFF5459 0.27 +1.3
90,206 + GFF5459 0.30 -0.1
90,206 + GFF5459 0.30 -0.9
90,207 - GFF5459 0.31 +1.0
90,207 - GFF5459 0.31 +0.7
90,207 - GFF5459 0.31 -0.8
90,207 - GFF5459 0.31 +1.1
90,336 - GFF5459 0.41 -0.8
90,753 - GFF5459 0.73 +0.0

Or see this region's nucleotide sequence