Strain Fitness in Variovorax sp. SCN45 around GFF4915

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4914 and GFF4915 are separated by 44 nucleotidesGFF4915 and GFF4916 are separated by 48 nucleotidesGFF4916 and GFF4917 are separated by 13 nucleotides GFF4914 - Luciferase-like monooxygenase YhbW, at 6,729 to 7,727 GFF4914 GFF4915 - hypothetical protein, at 7,772 to 9,454 GFF4915 GFF4916 - FIG00959407: hypothetical protein, at 9,503 to 10,102 GFF4916 GFF4917 - no description, at 10,116 to 11,918 GFF4917 Position (kb) 7 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2at 6.775 kb on + strandat 6.775 kb on + strandat 6.775 kb on + strandat 6.776 kb on - strandat 6.776 kb on - strandat 6.776 kb on - strandat 6.952 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.087 kb on + strand, within GFF4914at 7.088 kb on - strand, within GFF4914at 7.088 kb on - strand, within GFF4914at 7.088 kb on - strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.129 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.183 kb on + strand, within GFF4914at 7.184 kb on - strand, within GFF4914at 7.184 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.436 kb on - strand, within GFF4914at 7.609 kb on + strand, within GFF4914at 7.609 kb on + strand, within GFF4914at 7.610 kb on - strand, within GFF4914at 7.618 kb on + strand, within GFF4914at 7.619 kb on - strand, within GFF4914at 7.619 kb on - strand, within GFF4914at 7.701 kb on + strandat 7.701 kb on + strandat 7.702 kb on - strandat 7.702 kb on - strandat 7.774 kb on - strandat 7.785 kb on + strandat 7.785 kb on + strandat 7.786 kb on - strandat 7.786 kb on - strandat 7.786 kb on - strandat 7.787 kb on + strandat 7.787 kb on + strandat 7.787 kb on + strandat 7.787 kb on + strandat 7.787 kb on + strandat 7.788 kb on - strandat 7.788 kb on - strandat 7.788 kb on - strandat 7.788 kb on - strandat 7.788 kb on - strandat 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.998 kb on + strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 7.999 kb on - strand, within GFF4915at 8.187 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.193 kb on + strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.194 kb on - strand, within GFF4915at 8.517 kb on + strand, within GFF4915at 8.517 kb on + strand, within GFF4915at 8.529 kb on + strand, within GFF4915at 8.530 kb on - strand, within GFF4915at 8.664 kb on + strand, within GFF4915at 8.664 kb on + strand, within GFF4915at 8.664 kb on + strand, within GFF4915at 8.808 kb on + strand, within GFF4915at 8.808 kb on + strand, within GFF4915at 8.808 kb on + strand, within GFF4915at 8.808 kb on + strand, within GFF4915at 8.808 kb on + strand, within GFF4915at 8.808 kb on + strand, within GFF4915at 8.808 kb on + strand, within GFF4915at 8.808 kb on + strand, within GFF4915at 8.809 kb on - strand, within GFF4915at 8.809 kb on - strand, within GFF4915at 8.958 kb on + strand, within GFF4915at 8.958 kb on + strand, within GFF4915at 8.958 kb on + strand, within GFF4915at 8.958 kb on + strand, within GFF4915at 8.959 kb on - strand, within GFF4915at 8.959 kb on - strand, within GFF4915at 8.959 kb on - strand, within GFF4915at 8.959 kb on - strand, within GFF4915at 8.961 kb on + strand, within GFF4915at 8.961 kb on + strand, within GFF4915at 8.961 kb on + strand, within GFF4915at 8.961 kb on + strand, within GFF4915at 8.961 kb on + strand, within GFF4915at 8.961 kb on + strand, within GFF4915at 8.962 kb on - strand, within GFF4915at 8.962 kb on - strand, within GFF4915at 8.962 kb on - strand, within GFF4915at 8.962 kb on - strand, within GFF4915at 8.962 kb on - strand, within GFF4915at 9.378 kb on + strandat 9.378 kb on + strandat 9.378 kb on + strandat 9.378 kb on + strandat 9.378 kb on + strandat 9.378 kb on + strandat 9.379 kb on - strandat 9.379 kb on - strandat 9.379 kb on - strandat 9.379 kb on - strandat 9.379 kb on - strandat 9.379 kb on - strandat 9.379 kb on - strandat 9.483 kb on + strandat 9.483 kb on + strandat 9.483 kb on + strandat 9.483 kb on + strandat 9.484 kb on - strandat 9.484 kb on - strandat 9.484 kb on - strandat 9.529 kb on + strandat 9.529 kb on + strandat 9.529 kb on + strandat 9.530 kb on - strandat 9.588 kb on + strand, within GFF4916at 9.743 kb on + strand, within GFF4916at 9.744 kb on - strand, within GFF4916at 9.985 kb on - strand, within GFF4916at 9.985 kb on - strand, within GFF4916at 9.985 kb on - strand, within GFF4916

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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6,775 + +0.3
6,775 + +0.3
6,775 + +0.0
6,776 - -0.5
6,776 - -0.8
6,776 - +0.1
6,952 + GFF4914 0.22 -1.6
7,087 + GFF4914 0.36 -0.9
7,087 + GFF4914 0.36 -1.0
7,087 + GFF4914 0.36 -1.1
7,087 + GFF4914 0.36 +1.9
7,087 + GFF4914 0.36 +0.1
7,087 + GFF4914 0.36 -1.9
7,088 - GFF4914 0.36 +0.1
7,088 - GFF4914 0.36 -0.1
7,088 - GFF4914 0.36 -0.1
7,129 + GFF4914 0.40 -0.2
7,129 + GFF4914 0.40 +0.7
7,129 + GFF4914 0.40 -0.6
7,129 + GFF4914 0.40 -0.3
7,129 + GFF4914 0.40 +0.6
7,129 + GFF4914 0.40 -0.8
7,183 + GFF4914 0.45 +1.3
7,183 + GFF4914 0.45 -0.6
7,183 + GFF4914 0.45 +0.9
7,183 + GFF4914 0.45 -0.0
7,183 + GFF4914 0.45 +0.4
7,184 - GFF4914 0.46 -0.2
7,184 - GFF4914 0.46 -0.1
7,436 - GFF4914 0.71 +0.7
7,436 - GFF4914 0.71 -0.4
7,436 - GFF4914 0.71 -0.2
7,436 - GFF4914 0.71 -0.1
7,609 + GFF4914 0.88 -0.0
7,609 + GFF4914 0.88 -0.1
7,610 - GFF4914 0.88 -0.6
7,618 + GFF4914 0.89 -0.9
7,619 - GFF4914 0.89 +0.2
7,619 - GFF4914 0.89 -0.4
7,701 + -0.7
7,701 + -0.2
7,702 - +0.9
7,702 - -0.7
7,774 - -0.4
7,785 + +0.3
7,785 + -0.5
7,786 - -0.1
7,786 - +1.5
7,786 - -1.8
7,787 + +0.6
7,787 + +0.1
7,787 + -0.8
7,787 + +0.8
7,787 + -1.4
7,788 - -0.9
7,788 - -0.6
7,788 - -1.4
7,788 - +0.6
7,788 - -0.3
7,998 + GFF4915 0.13 +1.4
7,998 + GFF4915 0.13 -0.8
7,998 + GFF4915 0.13 -0.4
7,998 + GFF4915 0.13 -0.1
7,998 + GFF4915 0.13 -1.3
7,998 + GFF4915 0.13 -0.1
7,998 + GFF4915 0.13 -1.0
7,998 + GFF4915 0.13 -0.4
7,998 + GFF4915 0.13 +0.8
7,998 + GFF4915 0.13 -0.3
7,999 - GFF4915 0.13 +0.6
7,999 - GFF4915 0.13 -0.3
7,999 - GFF4915 0.13 +0.1
7,999 - GFF4915 0.13 +0.6
7,999 - GFF4915 0.13 -0.1
7,999 - GFF4915 0.13 +0.7
8,187 + GFF4915 0.25 -1.4
8,193 + GFF4915 0.25 -0.6
8,193 + GFF4915 0.25 +1.1
8,193 + GFF4915 0.25 +0.2
8,193 + GFF4915 0.25 -0.2
8,193 + GFF4915 0.25 -2.0
8,193 + GFF4915 0.25 -0.5
8,194 - GFF4915 0.25 -0.4
8,194 - GFF4915 0.25 -0.6
8,194 - GFF4915 0.25 +0.8
8,194 - GFF4915 0.25 -0.4
8,194 - GFF4915 0.25 -1.4
8,194 - GFF4915 0.25 -0.1
8,194 - GFF4915 0.25 -0.1
8,517 + GFF4915 0.44 -0.3
8,517 + GFF4915 0.44 +0.2
8,529 + GFF4915 0.45 +0.0
8,530 - GFF4915 0.45 +1.2
8,664 + GFF4915 0.53 -0.1
8,664 + GFF4915 0.53 +0.2
8,664 + GFF4915 0.53 -0.3
8,808 + GFF4915 0.62 -0.5
8,808 + GFF4915 0.62 -1.0
8,808 + GFF4915 0.62 +0.7
8,808 + GFF4915 0.62 +0.3
8,808 + GFF4915 0.62 +1.1
8,808 + GFF4915 0.62 -0.3
8,808 + GFF4915 0.62 -0.4
8,808 + GFF4915 0.62 +0.4
8,809 - GFF4915 0.62 -1.2
8,809 - GFF4915 0.62 -0.4
8,958 + GFF4915 0.70 +0.4
8,958 + GFF4915 0.70 +0.0
8,958 + GFF4915 0.70 -0.6
8,958 + GFF4915 0.70 -0.5
8,959 - GFF4915 0.71 +0.3
8,959 - GFF4915 0.71 +0.0
8,959 - GFF4915 0.71 -0.7
8,959 - GFF4915 0.71 -0.1
8,961 + GFF4915 0.71 -0.3
8,961 + GFF4915 0.71 +0.1
8,961 + GFF4915 0.71 -1.1
8,961 + GFF4915 0.71 +0.4
8,961 + GFF4915 0.71 +0.6
8,961 + GFF4915 0.71 +0.3
8,962 - GFF4915 0.71 -0.0
8,962 - GFF4915 0.71 +0.6
8,962 - GFF4915 0.71 -0.6
8,962 - GFF4915 0.71 +0.6
8,962 - GFF4915 0.71 -0.9
9,378 + -0.3
9,378 + -0.5
9,378 + +0.2
9,378 + -0.4
9,378 + +0.4
9,378 + -0.3
9,379 - -0.9
9,379 - -0.2
9,379 - -0.3
9,379 - -0.1
9,379 - -0.4
9,379 - -0.4
9,379 - +0.1
9,483 + +0.5
9,483 + -0.2
9,483 + -0.7
9,483 + -0.1
9,484 - -0.1
9,484 - +1.4
9,484 - -0.1
9,529 + -0.3
9,529 + -0.9
9,529 + -0.2
9,530 - -0.1
9,588 + GFF4916 0.14 -0.1
9,743 + GFF4916 0.40 -0.6
9,744 - GFF4916 0.40 +0.6
9,985 - GFF4916 0.80 -0.1
9,985 - GFF4916 0.80 +0.6
9,985 - GFF4916 0.80 +0.3

Or see this region's nucleotide sequence