Strain Fitness in Variovorax sp. SCN45 around GFF4001

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4000 and GFF4001 are separated by 106 nucleotidesGFF4001 and GFF4002 overlap by 4 nucleotides GFF4000 - ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12), at 200,809 to 203,250 GFF4000 GFF4001 - FIG01199237: hypothetical protein, at 203,357 to 207,079 GFF4001 GFF4002 - Putative transmembrane protein, at 207,076 to 208,608 GFF4002 Position (kb) 203 204 205 206 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.769 kb on - strand, within GFF4000at 202.769 kb on - strand, within GFF4000at 202.769 kb on - strand, within GFF4000at 202.769 kb on - strand, within GFF4000at 202.769 kb on - strand, within GFF4000at 202.802 kb on - strand, within GFF4000at 202.948 kb on + strand, within GFF4000at 202.960 kb on + strand, within GFF4000at 202.961 kb on - strand, within GFF4000at 203.017 kb on + strandat 203.017 kb on + strandat 203.018 kb on - strandat 203.773 kb on + strand, within GFF4001at 203.774 kb on - strand, within GFF4001at 203.981 kb on + strand, within GFF4001at 203.981 kb on + strand, within GFF4001at 203.982 kb on - strand, within GFF4001at 204.021 kb on - strand, within GFF4001at 204.092 kb on + strand, within GFF4001at 204.093 kb on - strand, within GFF4001at 204.131 kb on + strand, within GFF4001at 204.131 kb on + strand, within GFF4001at 204.131 kb on + strand, within GFF4001at 204.131 kb on + strand, within GFF4001at 204.132 kb on - strand, within GFF4001at 204.132 kb on - strand, within GFF4001at 204.132 kb on - strand, within GFF4001at 204.338 kb on + strand, within GFF4001at 204.338 kb on + strand, within GFF4001at 204.338 kb on + strand, within GFF4001at 204.338 kb on + strand, within GFF4001at 204.338 kb on + strand, within GFF4001at 204.338 kb on + strand, within GFF4001at 204.338 kb on + strand, within GFF4001at 204.339 kb on - strand, within GFF4001at 204.339 kb on - strand, within GFF4001at 204.339 kb on - strand, within GFF4001at 204.339 kb on - strand, within GFF4001at 204.339 kb on - strand, within GFF4001at 204.339 kb on - strand, within GFF4001at 204.339 kb on - strand, within GFF4001at 204.339 kb on - strand, within GFF4001at 204.455 kb on + strand, within GFF4001at 204.455 kb on + strand, within GFF4001at 204.455 kb on + strand, within GFF4001at 204.455 kb on + strand, within GFF4001at 204.455 kb on + strand, within GFF4001at 204.455 kb on + strand, within GFF4001at 204.455 kb on + strand, within GFF4001at 204.456 kb on - strand, within GFF4001at 204.456 kb on - strand, within GFF4001at 204.456 kb on - strand, within GFF4001at 204.458 kb on + strand, within GFF4001at 204.458 kb on + strand, within GFF4001at 204.458 kb on + strand, within GFF4001at 204.458 kb on + strand, within GFF4001at 204.458 kb on + strand, within GFF4001at 204.459 kb on - strand, within GFF4001at 204.459 kb on - strand, within GFF4001at 204.459 kb on - strand, within GFF4001at 204.459 kb on - strand, within GFF4001at 204.459 kb on - strand, within GFF4001at 204.473 kb on + strand, within GFF4001at 204.474 kb on - strand, within GFF4001at 204.701 kb on + strand, within GFF4001at 204.740 kb on + strand, within GFF4001at 204.740 kb on + strand, within GFF4001at 204.740 kb on + strand, within GFF4001at 204.762 kb on + strand, within GFF4001at 204.762 kb on + strand, within GFF4001at 204.762 kb on + strand, within GFF4001at 204.762 kb on + strand, within GFF4001at 204.762 kb on + strand, within GFF4001at 204.763 kb on - strand, within GFF4001at 204.763 kb on - strand, within GFF4001at 204.763 kb on - strand, within GFF4001at 204.763 kb on - strand, within GFF4001at 204.763 kb on - strand, within GFF4001at 204.763 kb on - strand, within GFF4001at 204.763 kb on - strand, within GFF4001at 204.806 kb on + strand, within GFF4001at 204.806 kb on + strand, within GFF4001at 204.806 kb on + strand, within GFF4001at 204.806 kb on + strand, within GFF4001at 204.806 kb on + strand, within GFF4001at 204.905 kb on + strand, within GFF4001at 204.905 kb on + strand, within GFF4001at 204.905 kb on + strand, within GFF4001at 204.905 kb on + strand, within GFF4001at 204.905 kb on + strand, within GFF4001at 204.905 kb on + strand, within GFF4001at 204.905 kb on + strand, within GFF4001at 204.905 kb on + strand, within GFF4001at 204.905 kb on + strand, within GFF4001at 204.905 kb on + strand, within GFF4001at 204.906 kb on - strand, within GFF4001at 204.906 kb on - strand, within GFF4001at 204.906 kb on - strand, within GFF4001at 204.906 kb on - strand, within GFF4001at 204.906 kb on - strand, within GFF4001at 204.906 kb on - strand, within GFF4001at 204.906 kb on - strand, within GFF4001at 204.935 kb on + strand, within GFF4001at 204.935 kb on + strand, within GFF4001at 204.935 kb on + strand, within GFF4001at 204.935 kb on + strand, within GFF4001at 204.935 kb on + strand, within GFF4001at 204.935 kb on + strand, within GFF4001at 204.936 kb on - strand, within GFF4001at 204.936 kb on - strand, within GFF4001at 204.936 kb on - strand, within GFF4001at 204.936 kb on - strand, within GFF4001at 204.936 kb on - strand, within GFF4001at 204.936 kb on - strand, within GFF4001at 204.936 kb on - strand, within GFF4001at 204.936 kb on - strand, within GFF4001at 205.991 kb on + strand, within GFF4001at 205.991 kb on + strand, within GFF4001at 205.991 kb on + strand, within GFF4001at 205.991 kb on + strand, within GFF4001at 205.992 kb on - strand, within GFF4001at 205.992 kb on - strand, within GFF4001at 205.992 kb on - strand, within GFF4001at 206.076 kb on + strand, within GFF4001at 206.077 kb on - strand, within GFF4001at 206.077 kb on - strand, within GFF4001at 206.077 kb on - strand, within GFF4001at 206.077 kb on - strand, within GFF4001at 206.077 kb on - strand, within GFF4001at 206.127 kb on - strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.459 kb on + strand, within GFF4001at 206.460 kb on - strand, within GFF4001at 206.460 kb on - strand, within GFF4001at 206.492 kb on + strand, within GFF4001at 206.492 kb on + strand, within GFF4001at 206.493 kb on - strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.556 kb on - strand, within GFF4001at 206.556 kb on - strand, within GFF4001at 206.556 kb on - strand, within GFF4001at 206.556 kb on - strand, within GFF4001at 206.556 kb on - strand, within GFF4001at 206.771 kb on + strandat 206.772 kb on - strandat 206.772 kb on - strandat 206.772 kb on - strandat 206.772 kb on - strandat 206.999 kb on + strandat 206.999 kb on + strandat 207.206 kb on - strandat 207.206 kb on - strandat 207.235 kb on + strand, within GFF4002at 207.235 kb on + strand, within GFF4002at 207.235 kb on + strand, within GFF4002at 207.235 kb on + strand, within GFF4002at 207.235 kb on + strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.250 kb on + strand, within GFF4002at 207.250 kb on + strand, within GFF4002at 207.304 kb on + strand, within GFF4002at 207.304 kb on + strand, within GFF4002at 207.304 kb on + strand, within GFF4002at 207.305 kb on - strand, within GFF4002at 207.853 kb on + strand, within GFF4002at 207.854 kb on - strand, within GFF4002at 207.854 kb on - strand, within GFF4002at 207.862 kb on + strand, within GFF4002at 207.862 kb on + strand, within GFF4002at 207.863 kb on - strand, within GFF4002at 207.863 kb on - strand, within GFF4002at 207.908 kb on + strand, within GFF4002at 207.908 kb on + strand, within GFF4002at 208.015 kb on + strand, within GFF4002at 208.015 kb on + strand, within GFF4002at 208.015 kb on + strand, within GFF4002at 208.015 kb on + strand, within GFF4002at 208.016 kb on - strand, within GFF4002at 208.016 kb on - strand, within GFF4002

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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202,768 + GFF4000 0.80 +0.3
202,768 + GFF4000 0.80 -0.4
202,768 + GFF4000 0.80 -0.6
202,768 + GFF4000 0.80 +0.3
202,768 + GFF4000 0.80 -0.9
202,768 + GFF4000 0.80 -0.9
202,768 + GFF4000 0.80 +0.3
202,768 + GFF4000 0.80 -0.3
202,769 - GFF4000 0.80 -0.4
202,769 - GFF4000 0.80 -0.9
202,769 - GFF4000 0.80 -1.5
202,769 - GFF4000 0.80 +1.4
202,769 - GFF4000 0.80 -1.7
202,802 - GFF4000 0.82 +0.7
202,948 + GFF4000 0.88 +0.1
202,960 + GFF4000 0.88 -0.5
202,961 - GFF4000 0.88 -0.3
203,017 + +1.0
203,017 + -0.5
203,018 - +1.4
203,773 + GFF4001 0.11 +0.3
203,774 - GFF4001 0.11 -1.1
203,981 + GFF4001 0.17 +0.6
203,981 + GFF4001 0.17 +0.5
203,982 - GFF4001 0.17 +0.7
204,021 - GFF4001 0.18 +0.4
204,092 + GFF4001 0.20 +0.6
204,093 - GFF4001 0.20 -0.2
204,131 + GFF4001 0.21 -0.3
204,131 + GFF4001 0.21 +0.1
204,131 + GFF4001 0.21 +0.6
204,131 + GFF4001 0.21 +0.9
204,132 - GFF4001 0.21 +0.7
204,132 - GFF4001 0.21 -0.1
204,132 - GFF4001 0.21 +1.4
204,338 + GFF4001 0.26 -0.4
204,338 + GFF4001 0.26 -0.2
204,338 + GFF4001 0.26 +0.4
204,338 + GFF4001 0.26 +0.7
204,338 + GFF4001 0.26 +0.6
204,338 + GFF4001 0.26 -0.1
204,338 + GFF4001 0.26 -0.1
204,339 - GFF4001 0.26 -1.4
204,339 - GFF4001 0.26 -0.7
204,339 - GFF4001 0.26 +0.1
204,339 - GFF4001 0.26 +0.1
204,339 - GFF4001 0.26 -0.8
204,339 - GFF4001 0.26 -0.4
204,339 - GFF4001 0.26 +1.7
204,339 - GFF4001 0.26 +1.9
204,455 + GFF4001 0.29 +0.4
204,455 + GFF4001 0.29 -1.2
204,455 + GFF4001 0.29 -0.6
204,455 + GFF4001 0.29 +1.2
204,455 + GFF4001 0.29 +0.2
204,455 + GFF4001 0.29 -1.4
204,455 + GFF4001 0.29 +1.4
204,456 - GFF4001 0.30 +0.7
204,456 - GFF4001 0.30 +1.2
204,456 - GFF4001 0.30 -0.0
204,458 + GFF4001 0.30 -0.8
204,458 + GFF4001 0.30 -1.4
204,458 + GFF4001 0.30 +0.6
204,458 + GFF4001 0.30 +0.7
204,458 + GFF4001 0.30 +0.3
204,459 - GFF4001 0.30 -0.6
204,459 - GFF4001 0.30 -0.2
204,459 - GFF4001 0.30 +0.5
204,459 - GFF4001 0.30 -0.9
204,459 - GFF4001 0.30 +0.0
204,473 + GFF4001 0.30 +0.0
204,474 - GFF4001 0.30 +1.3
204,701 + GFF4001 0.36 -0.0
204,740 + GFF4001 0.37 -0.9
204,740 + GFF4001 0.37 +0.4
204,740 + GFF4001 0.37 +1.3
204,762 + GFF4001 0.38 +1.0
204,762 + GFF4001 0.38 +0.1
204,762 + GFF4001 0.38 -0.4
204,762 + GFF4001 0.38 +1.7
204,762 + GFF4001 0.38 +0.1
204,763 - GFF4001 0.38 -0.6
204,763 - GFF4001 0.38 -0.3
204,763 - GFF4001 0.38 -1.7
204,763 - GFF4001 0.38 -0.9
204,763 - GFF4001 0.38 +0.6
204,763 - GFF4001 0.38 +0.4
204,763 - GFF4001 0.38 +0.4
204,806 + GFF4001 0.39 -1.9
204,806 + GFF4001 0.39 +1.7
204,806 + GFF4001 0.39 +1.7
204,806 + GFF4001 0.39 +1.5
204,806 + GFF4001 0.39 -0.1
204,905 + GFF4001 0.42 +0.5
204,905 + GFF4001 0.42 -0.6
204,905 + GFF4001 0.42 -1.3
204,905 + GFF4001 0.42 -0.4
204,905 + GFF4001 0.42 -1.0
204,905 + GFF4001 0.42 +0.4
204,905 + GFF4001 0.42 +0.0
204,905 + GFF4001 0.42 +0.4
204,905 + GFF4001 0.42 -0.0
204,905 + GFF4001 0.42 +0.2
204,906 - GFF4001 0.42 +0.5
204,906 - GFF4001 0.42 -0.4
204,906 - GFF4001 0.42 +0.3
204,906 - GFF4001 0.42 +0.9
204,906 - GFF4001 0.42 +0.8
204,906 - GFF4001 0.42 -0.4
204,906 - GFF4001 0.42 -0.3
204,935 + GFF4001 0.42 -0.0
204,935 + GFF4001 0.42 -1.2
204,935 + GFF4001 0.42 -1.2
204,935 + GFF4001 0.42 -1.5
204,935 + GFF4001 0.42 -0.2
204,935 + GFF4001 0.42 -0.0
204,936 - GFF4001 0.42 -1.9
204,936 - GFF4001 0.42 -0.4
204,936 - GFF4001 0.42 -0.4
204,936 - GFF4001 0.42 -1.1
204,936 - GFF4001 0.42 +0.1
204,936 - GFF4001 0.42 -0.5
204,936 - GFF4001 0.42 +1.3
204,936 - GFF4001 0.42 -0.1
205,991 + GFF4001 0.71 -0.0
205,991 + GFF4001 0.71 -0.2
205,991 + GFF4001 0.71 +1.7
205,991 + GFF4001 0.71 -0.9
205,992 - GFF4001 0.71 +1.1
205,992 - GFF4001 0.71 -1.0
205,992 - GFF4001 0.71 -1.6
206,076 + GFF4001 0.73 -0.0
206,077 - GFF4001 0.73 +0.1
206,077 - GFF4001 0.73 +0.6
206,077 - GFF4001 0.73 -0.8
206,077 - GFF4001 0.73 -0.2
206,077 - GFF4001 0.73 -3.1
206,127 - GFF4001 0.74 -1.5
206,156 + GFF4001 0.75 -0.1
206,156 + GFF4001 0.75 +0.7
206,156 + GFF4001 0.75 -0.4
206,156 + GFF4001 0.75 -0.4
206,156 + GFF4001 0.75 +0.9
206,156 + GFF4001 0.75 +0.2
206,156 + GFF4001 0.75 +0.1
206,156 + GFF4001 0.75 +0.0
206,157 - GFF4001 0.75 +0.2
206,157 - GFF4001 0.75 +0.6
206,157 - GFF4001 0.75 -2.0
206,157 - GFF4001 0.75 -0.2
206,157 - GFF4001 0.75 -0.6
206,157 - GFF4001 0.75 -0.3
206,157 - GFF4001 0.75 -0.2
206,157 - GFF4001 0.75 -2.2
206,157 - GFF4001 0.75 -0.3
206,157 - GFF4001 0.75 -0.2
206,459 + GFF4001 0.83 +0.1
206,460 - GFF4001 0.83 -0.4
206,460 - GFF4001 0.83 +1.1
206,492 + GFF4001 0.84 -0.2
206,492 + GFF4001 0.84 -0.5
206,493 - GFF4001 0.84 +0.0
206,555 + GFF4001 0.86 +0.3
206,555 + GFF4001 0.86 -0.3
206,555 + GFF4001 0.86 -0.3
206,555 + GFF4001 0.86 -0.2
206,555 + GFF4001 0.86 -0.2
206,555 + GFF4001 0.86 -0.9
206,555 + GFF4001 0.86 +1.7
206,555 + GFF4001 0.86 -1.7
206,555 + GFF4001 0.86 -0.1
206,555 + GFF4001 0.86 -0.0
206,556 - GFF4001 0.86 +0.6
206,556 - GFF4001 0.86 -0.0
206,556 - GFF4001 0.86 +0.7
206,556 - GFF4001 0.86 -0.6
206,556 - GFF4001 0.86 -1.1
206,771 + -0.2
206,772 - +0.5
206,772 - -0.1
206,772 - +0.3
206,772 - +0.1
206,999 + +0.7
206,999 + -0.6
207,206 - -0.6
207,206 - -1.0
207,235 + GFF4002 0.10 -1.3
207,235 + GFF4002 0.10 -1.3
207,235 + GFF4002 0.10 -0.3
207,235 + GFF4002 0.10 +1.3
207,235 + GFF4002 0.10 -0.3
207,236 - GFF4002 0.10 -1.4
207,236 - GFF4002 0.10 +0.3
207,236 - GFF4002 0.10 -0.3
207,236 - GFF4002 0.10 -0.2
207,236 - GFF4002 0.10 +0.1
207,236 - GFF4002 0.10 +0.5
207,236 - GFF4002 0.10 +0.6
207,250 + GFF4002 0.11 +0.7
207,250 + GFF4002 0.11 +1.0
207,304 + GFF4002 0.15 -1.1
207,304 + GFF4002 0.15 +0.1
207,304 + GFF4002 0.15 -0.8
207,305 - GFF4002 0.15 -0.1
207,853 + GFF4002 0.51 +0.1
207,854 - GFF4002 0.51 -0.7
207,854 - GFF4002 0.51 -2.0
207,862 + GFF4002 0.51 +0.2
207,862 + GFF4002 0.51 +0.1
207,863 - GFF4002 0.51 +0.2
207,863 - GFF4002 0.51 -0.4
207,908 + GFF4002 0.54 -1.2
207,908 + GFF4002 0.54 -1.4
208,015 + GFF4002 0.61 -0.2
208,015 + GFF4002 0.61 +0.9
208,015 + GFF4002 0.61 +0.5
208,015 + GFF4002 0.61 +0.3
208,016 - GFF4002 0.61 +0.7
208,016 - GFF4002 0.61 +0.4

Or see this region's nucleotide sequence