Strain Fitness in Variovorax sp. SCN45 around GFF394

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF393 and GFF394 are separated by 208 nucleotidesGFF394 and GFF395 are separated by 53 nucleotides GFF393 - SSU ribosomal protein S2p (SAe), at 424,863 to 425,618 GFF393 GFF394 - Putative amidase R03093, at 425,827 to 427,152 GFF394 GFF395 - D-amino acid dehydrogenase (EC 1.4.99.6), at 427,206 to 428,459 GFF395 Position (kb) 425 426 427 428Strain fitness (log2 ratio) -3 -2 -1 0 1at 425.766 kb on + strandat 425.766 kb on + strandat 425.766 kb on + strandat 425.766 kb on + strandat 425.766 kb on + strandat 425.766 kb on + strandat 425.767 kb on - strandat 425.767 kb on - strandat 425.767 kb on - strandat 425.767 kb on - strandat 425.767 kb on - strandat 425.767 kb on - strandat 425.767 kb on - strandat 426.143 kb on + strand, within GFF394at 426.143 kb on + strand, within GFF394at 426.143 kb on + strand, within GFF394at 426.143 kb on + strand, within GFF394at 426.144 kb on - strand, within GFF394at 426.144 kb on - strand, within GFF394at 426.144 kb on - strand, within GFF394at 426.144 kb on - strand, within GFF394at 426.205 kb on + strand, within GFF394at 426.205 kb on + strand, within GFF394at 426.205 kb on + strand, within GFF394at 426.206 kb on - strand, within GFF394at 426.206 kb on - strand, within GFF394at 426.322 kb on - strand, within GFF394at 426.532 kb on + strand, within GFF394at 426.532 kb on + strand, within GFF394at 426.532 kb on + strand, within GFF394at 426.532 kb on + strand, within GFF394at 426.532 kb on + strand, within GFF394at 426.533 kb on - strand, within GFF394at 426.533 kb on - strand, within GFF394at 426.533 kb on - strand, within GFF394at 426.533 kb on - strand, within GFF394at 426.533 kb on - strand, within GFF394at 426.597 kb on - strand, within GFF394at 426.757 kb on + strand, within GFF394at 426.771 kb on - strand, within GFF394at 426.771 kb on - strand, within GFF394at 426.771 kb on - strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.814 kb on + strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 426.815 kb on - strand, within GFF394at 427.116 kb on - strandat 427.139 kb on + strandat 427.150 kb on + strandat 427.150 kb on + strandat 427.151 kb on - strandat 427.167 kb on - strandat 427.167 kb on - strandat 427.170 kb on - strandat 427.170 kb on - strandat 427.170 kb on - strandat 427.191 kb on + strandat 427.191 kb on + strandat 427.191 kb on + strandat 427.191 kb on + strandat 427.192 kb on - strandat 427.192 kb on - strandat 427.196 kb on - strandat 427.196 kb on - strandat 427.196 kb on - strandat 427.356 kb on + strand, within GFF395at 427.356 kb on + strand, within GFF395at 427.356 kb on + strand, within GFF395at 427.356 kb on + strand, within GFF395at 427.356 kb on + strand, within GFF395at 427.356 kb on + strand, within GFF395at 427.356 kb on + strand, within GFF395at 427.357 kb on - strand, within GFF395at 427.357 kb on - strand, within GFF395at 427.506 kb on + strand, within GFF395at 427.506 kb on + strand, within GFF395at 427.506 kb on + strand, within GFF395at 427.506 kb on + strand, within GFF395at 427.506 kb on + strand, within GFF395at 427.506 kb on + strand, within GFF395at 427.507 kb on - strand, within GFF395at 427.507 kb on - strand, within GFF395at 427.507 kb on - strand, within GFF395at 427.507 kb on - strand, within GFF395at 427.507 kb on - strand, within GFF395at 427.507 kb on - strand, within GFF395at 427.507 kb on - strand, within GFF395at 427.507 kb on - strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.545 kb on + strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.546 kb on - strand, within GFF395at 427.593 kb on + strand, within GFF395at 427.593 kb on + strand, within GFF395at 427.593 kb on + strand, within GFF395at 427.593 kb on + strand, within GFF395at 427.593 kb on + strand, within GFF395at 427.593 kb on + strand, within GFF395at 427.594 kb on - strand, within GFF395at 427.594 kb on - strand, within GFF395at 427.594 kb on - strand, within GFF395at 427.594 kb on - strand, within GFF395at 427.594 kb on - strand, within GFF395at 427.611 kb on + strand, within GFF395at 427.611 kb on + strand, within GFF395at 427.611 kb on + strand, within GFF395at 427.612 kb on - strand, within GFF395at 427.612 kb on - strand, within GFF395at 427.935 kb on + strand, within GFF395at 427.935 kb on + strand, within GFF395at 427.935 kb on + strand, within GFF395at 427.935 kb on + strand, within GFF395at 428.019 kb on + strand, within GFF395at 428.020 kb on - strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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425,766 + -0.9
425,766 + -0.9
425,766 + -0.6
425,766 + +1.0
425,766 + -0.1
425,766 + -1.1
425,767 - +0.7
425,767 - -0.3
425,767 - -0.5
425,767 - -1.4
425,767 - +0.0
425,767 - +0.3
425,767 - -0.0
426,143 + GFF394 0.24 -0.5
426,143 + GFF394 0.24 -0.5
426,143 + GFF394 0.24 -1.0
426,143 + GFF394 0.24 +0.6
426,144 - GFF394 0.24 -1.6
426,144 - GFF394 0.24 -0.8
426,144 - GFF394 0.24 -0.2
426,144 - GFF394 0.24 +0.8
426,205 + GFF394 0.29 +0.0
426,205 + GFF394 0.29 +0.0
426,205 + GFF394 0.29 +0.8
426,206 - GFF394 0.29 -0.9
426,206 - GFF394 0.29 -0.4
426,322 - GFF394 0.37 +0.5
426,532 + GFF394 0.53 +1.7
426,532 + GFF394 0.53 -0.8
426,532 + GFF394 0.53 +0.7
426,532 + GFF394 0.53 -0.8
426,532 + GFF394 0.53 -0.7
426,533 - GFF394 0.53 +1.1
426,533 - GFF394 0.53 -0.3
426,533 - GFF394 0.53 -0.8
426,533 - GFF394 0.53 -1.2
426,533 - GFF394 0.53 +1.4
426,597 - GFF394 0.58 -1.1
426,757 + GFF394 0.70 -0.3
426,771 - GFF394 0.71 -0.1
426,771 - GFF394 0.71 +0.2
426,771 - GFF394 0.71 -1.4
426,814 + GFF394 0.74 -0.2
426,814 + GFF394 0.74 +1.0
426,814 + GFF394 0.74 +0.9
426,814 + GFF394 0.74 -2.8
426,814 + GFF394 0.74 -0.6
426,814 + GFF394 0.74 -1.6
426,814 + GFF394 0.74 -1.0
426,814 + GFF394 0.74 -0.5
426,814 + GFF394 0.74 -0.1
426,814 + GFF394 0.74 -1.4
426,814 + GFF394 0.74 +0.4
426,814 + GFF394 0.74 +0.6
426,814 + GFF394 0.74 -0.6
426,814 + GFF394 0.74 -0.3
426,814 + GFF394 0.74 -0.6
426,814 + GFF394 0.74 -2.4
426,814 + GFF394 0.74 -0.2
426,815 - GFF394 0.75 -0.2
426,815 - GFF394 0.75 -2.0
426,815 - GFF394 0.75 -0.2
426,815 - GFF394 0.75 -0.0
426,815 - GFF394 0.75 +0.8
426,815 - GFF394 0.75 -0.5
426,815 - GFF394 0.75 -1.8
426,815 - GFF394 0.75 +0.1
426,815 - GFF394 0.75 -0.5
426,815 - GFF394 0.75 -0.4
426,815 - GFF394 0.75 +0.7
426,815 - GFF394 0.75 -1.0
426,815 - GFF394 0.75 -0.4
426,815 - GFF394 0.75 -0.4
426,815 - GFF394 0.75 -1.0
426,815 - GFF394 0.75 +0.8
426,815 - GFF394 0.75 -1.8
426,815 - GFF394 0.75 -0.6
426,815 - GFF394 0.75 +0.4
426,815 - GFF394 0.75 +0.5
426,815 - GFF394 0.75 -0.8
426,815 - GFF394 0.75 +1.4
426,815 - GFF394 0.75 -0.4
426,815 - GFF394 0.75 -0.1
426,815 - GFF394 0.75 -0.6
427,116 - -1.4
427,139 + -1.0
427,150 + +0.6
427,150 + -0.1
427,151 - -0.8
427,167 - -0.3
427,167 - -1.4
427,170 - -1.0
427,170 - +0.1
427,170 - -0.6
427,191 + -0.3
427,191 + -0.2
427,191 + -1.4
427,191 + -1.0
427,192 - +0.1
427,192 - +0.1
427,196 - -1.2
427,196 - -0.4
427,196 - -0.7
427,356 + GFF395 0.12 +0.8
427,356 + GFF395 0.12 -0.5
427,356 + GFF395 0.12 -0.6
427,356 + GFF395 0.12 -0.6
427,356 + GFF395 0.12 -1.2
427,356 + GFF395 0.12 -0.6
427,356 + GFF395 0.12 -0.5
427,357 - GFF395 0.12 +0.4
427,357 - GFF395 0.12 -1.3
427,506 + GFF395 0.24 -0.7
427,506 + GFF395 0.24 +0.2
427,506 + GFF395 0.24 +1.0
427,506 + GFF395 0.24 -0.8
427,506 + GFF395 0.24 +0.6
427,506 + GFF395 0.24 -2.2
427,507 - GFF395 0.24 -2.1
427,507 - GFF395 0.24 -0.6
427,507 - GFF395 0.24 -0.0
427,507 - GFF395 0.24 -1.0
427,507 - GFF395 0.24 -1.4
427,507 - GFF395 0.24 -0.4
427,507 - GFF395 0.24 -0.4
427,507 - GFF395 0.24 +0.1
427,545 + GFF395 0.27 +0.5
427,545 + GFF395 0.27 -1.0
427,545 + GFF395 0.27 -0.3
427,545 + GFF395 0.27 -1.2
427,545 + GFF395 0.27 +0.1
427,545 + GFF395 0.27 +0.4
427,545 + GFF395 0.27 -0.6
427,545 + GFF395 0.27 -0.8
427,545 + GFF395 0.27 +0.5
427,545 + GFF395 0.27 +0.8
427,545 + GFF395 0.27 -1.6
427,545 + GFF395 0.27 +0.6
427,546 - GFF395 0.27 -1.2
427,546 - GFF395 0.27 -0.9
427,546 - GFF395 0.27 -0.3
427,546 - GFF395 0.27 -1.0
427,546 - GFF395 0.27 -0.8
427,546 - GFF395 0.27 +0.2
427,546 - GFF395 0.27 -0.6
427,546 - GFF395 0.27 -1.4
427,546 - GFF395 0.27 +0.4
427,546 - GFF395 0.27 -0.0
427,546 - GFF395 0.27 -0.2
427,546 - GFF395 0.27 -0.0
427,593 + GFF395 0.31 -0.9
427,593 + GFF395 0.31 -0.8
427,593 + GFF395 0.31 -0.5
427,593 + GFF395 0.31 -0.1
427,593 + GFF395 0.31 -1.2
427,593 + GFF395 0.31 +0.9
427,594 - GFF395 0.31 -1.0
427,594 - GFF395 0.31 -0.5
427,594 - GFF395 0.31 +0.4
427,594 - GFF395 0.31 -0.6
427,594 - GFF395 0.31 -0.1
427,611 + GFF395 0.32 +0.1
427,611 + GFF395 0.32 -0.3
427,611 + GFF395 0.32 +0.4
427,612 - GFF395 0.32 -0.6
427,612 - GFF395 0.32 +0.3
427,935 + GFF395 0.58 -0.6
427,935 + GFF395 0.58 -0.8
427,935 + GFF395 0.58 -0.8
427,935 + GFF395 0.58 +0.9
428,019 + GFF395 0.65 +0.0
428,020 - GFF395 0.65 +0.7
428,091 + GFF395 0.71 +0.1
428,091 + GFF395 0.71 +0.9
428,091 + GFF395 0.71 -1.1
428,091 + GFF395 0.71 +0.1
428,091 + GFF395 0.71 -0.2
428,091 + GFF395 0.71 +0.4
428,091 + GFF395 0.71 -0.3
428,091 + GFF395 0.71 -0.3
428,091 + GFF395 0.71 -0.4
428,092 - GFF395 0.71 -0.1
428,092 - GFF395 0.71 +1.6
428,092 - GFF395 0.71 -0.2
428,092 - GFF395 0.71 -0.1
428,092 - GFF395 0.71 -0.4
428,092 - GFF395 0.71 +0.9
428,092 - GFF395 0.71 +1.6
428,092 - GFF395 0.71 -2.0
428,092 - GFF395 0.71 -0.5
428,092 - GFF395 0.71 +0.3
428,092 - GFF395 0.71 +0.3
428,092 - GFF395 0.71 -0.7

Or see this region's nucleotide sequence