Strain Fitness in Variovorax sp. SCN45 around GFF3816

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
1,295	+				+0.8
1,295	+				-0.1
1,295	+				+1.5
1,295	+				-0.5
1,295	+				-0.7
1,295	+				+0.1
1,295	+				+0.5
1,295	+				-0.2
1,295	+				-0.9
1,295	+				+0.7
1,296	-				-0.7
1,296	-				+0.3
1,296	-				+0.9
1,296	-				+0.7
1,296	-				-1.7
1,296	-				-0.3
1,296	-				-0.2
1,296	-				+2.0
1,296	-				+0.9
1,470	+		GFF3815	0.10	-0.7
1,470	+		GFF3815	0.10	+0.0
1,471	-		GFF3815	0.10	-0.3
1,471	-		GFF3815	0.10	+0.7
1,471	-		GFF3815	0.10	+0.0
1,471	-		GFF3815	0.10	+0.7
1,471	-		GFF3815	0.10	+1.7
1,471	-		GFF3815	0.10	-0.7
1,508	+		GFF3815	0.15	-0.1
1,508	+		GFF3815	0.15	+0.4
1,508	+		GFF3815	0.15	+1.1
1,508	+		GFF3815	0.15	-0.7
1,508	+		GFF3815	0.15	+0.4
1,508	+		GFF3815	0.15	-0.9
1,509	-		GFF3815	0.15	+1.0
1,509	-		GFF3815	0.15	-0.5
1,509	-		GFF3815	0.15	-0.5
1,509	-		GFF3815	0.15	-1.1
1,509	-		GFF3815	0.15	+0.2
1,509	-		GFF3815	0.15	-0.1
1,551	+		GFF3815	0.21	-1.6
1,551	+		GFF3815	0.21	+0.3
1,551	+		GFF3815	0.21	+1.0
1,551	+		GFF3815	0.21	-0.2
1,552	-		GFF3815	0.21	-0.9
1,552	-		GFF3815	0.21	+0.7
1,563	+		GFF3815	0.22	-0.4
1,591	-		GFF3815	0.26	-1.6
1,779	+		GFF3815	0.50	-0.4
1,779	+		GFF3815	0.50	-1.3
1,779	+		GFF3815	0.50	-0.1
1,779	+		GFF3815	0.50	-0.9
1,780	-		GFF3815	0.50	+1.0
1,780	-		GFF3815	0.50	+0.2
1,803	+		GFF3815	0.53	-0.3
1,803	+		GFF3815	0.53	-0.3
1,803	+		GFF3815	0.53	-0.3
1,803	+		GFF3815	0.53	-0.2
2,034	+		GFF3815	0.83	-0.4
2,034	+		GFF3815	0.83	+0.2
2,035	-		GFF3815	0.83	+0.1
2,035	-		GFF3815	0.83	+0.3
2,035	-		GFF3815	0.83	-0.6
2,206	-				-0.4
2,253	-				+0.5
2,253	-				-0.7
2,253	-				+0.1
2,253	-				-0.3
2,582	+		GFF3816	0.43	+0.3
2,582	+		GFF3816	0.43	-0.4
2,582	+		GFF3816	0.43	-1.3
2,582	+		GFF3816	0.43	-0.1
2,582	+		GFF3816	0.43	+1.3
2,582	+		GFF3816	0.43	-0.3
2,582	+		GFF3816	0.43	+0.6
2,582	+		GFF3816	0.43	+0.1
2,582	+		GFF3816	0.43	-0.9
2,582	+		GFF3816	0.43	-1.0
2,582	+		GFF3816	0.43	-0.6
2,582	+		GFF3816	0.43	+1.7
2,582	+		GFF3816	0.43	+0.6
2,583	-		GFF3816	0.43	-0.4
2,583	-		GFF3816	0.43	-0.7
2,583	-		GFF3816	0.43	-0.8
2,583	-		GFF3816	0.43	-1.3
2,583	-		GFF3816	0.43	+0.0
2,903	-		GFF3816	0.85	-0.6
3,021	+				+1.4
3,171	+		GFF3817	0.20	+1.1
3,172	-		GFF3817	0.21	-1.6
3,172	-		GFF3817	0.21	+0.7
3,172	-		GFF3817	0.21	+0.1
3,172	-		GFF3817	0.21	-1.7
3,172	-		GFF3817	0.21	+0.0
3,423	+		GFF3817	0.63	-1.3
3,540	+		GFF3817	0.82	+1.0
3,541	-		GFF3817	0.83	+1.2
3,541	-		GFF3817	0.83	+0.2
3,661	-				+0.3
3,661	-				+0.1
3,662	+				-0.4
3,662	+				+0.4
3,662	+				-1.9
3,662	+				-0.1
3,662	+				-1.0
3,662	+				+0.1
3,662	+				-0.3
3,662	+				+1.3
3,662	+				+3.1
3,663	-				+0.1
3,663	-				-0.3
3,663	-				+1.2
3,663	-				+1.2
3,663	-				-0.4
3,758	+				-0.5
3,759	+				+0.7
3,759	+				-1.1
3,759	+				-0.3
3,759	+				-0.1
3,760	-				-0.4
3,760	-				-0.3
3,760	-				-1.3
3,760	-				-0.2
3,761	+				+1.0
3,761	+				+0.3
3,762	-				-0.4
3,762	-				-0.1
3,852	+				-0.8
3,852	+				+1.3
3,853	-				+0.3
3,853	-				+0.6
3,900	+		GFF3818	0.17	+1.4
3,901	-		GFF3818	0.17	+1.0
3,901	-		GFF3818	0.17	+0.4
3,903	+		GFF3818	0.18	-0.5
3,903	+		GFF3818	0.18	-0.2
3,903	+		GFF3818	0.18	-0.6
3,904	-		GFF3818	0.18	-0.5
3,904	-		GFF3818	0.18	+0.6
3,904	-		GFF3818	0.18	-2.0
3,904	-		GFF3818	0.18	-1.1
3,908	+		GFF3818	0.19	+0.4
3,908	+		GFF3818	0.19	-0.7
3,909	-		GFF3818	0.19	+0.1