Strain Fitness in Variovorax sp. SCN45 around GFF3299

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3298 and GFF3299 are separated by 87 nucleotidesGFF3299 and GFF3300 are separated by 46 nucleotidesGFF3300 and GFF3301 overlap by 4 nucleotides GFF3298 - Multimeric flavodoxin WrbA, at 122,149 to 123,234 GFF3298 GFF3299 - Pirin, at 123,322 to 124,218 GFF3299 GFF3300 - hypothetical protein, at 124,265 to 124,822 GFF3300 GFF3301 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 124,819 to 126,246 GFF3301 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1 2at 122.322 kb on - strand, within GFF3298at 122.322 kb on - strand, within GFF3298at 122.322 kb on - strand, within GFF3298at 122.322 kb on - strand, within GFF3298at 122.322 kb on - strand, within GFF3298at 122.322 kb on - strand, within GFF3298at 122.322 kb on - strand, within GFF3298at 122.431 kb on + strand, within GFF3298at 122.431 kb on + strand, within GFF3298at 122.431 kb on + strand, within GFF3298at 122.431 kb on + strand, within GFF3298at 122.432 kb on - strand, within GFF3298at 122.432 kb on - strand, within GFF3298at 122.432 kb on - strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.554 kb on + strand, within GFF3298at 122.555 kb on - strand, within GFF3298at 122.555 kb on - strand, within GFF3298at 122.555 kb on - strand, within GFF3298at 122.555 kb on - strand, within GFF3298at 122.555 kb on - strand, within GFF3298at 122.555 kb on - strand, within GFF3298at 122.555 kb on - strand, within GFF3298at 122.555 kb on - strand, within GFF3298at 122.555 kb on - strand, within GFF3298at 122.555 kb on - strand, within GFF3298at 122.597 kb on + strand, within GFF3298at 122.597 kb on + strand, within GFF3298at 122.598 kb on - strand, within GFF3298at 122.598 kb on - strand, within GFF3298at 122.651 kb on + strand, within GFF3298at 122.651 kb on + strand, within GFF3298at 122.652 kb on - strand, within GFF3298at 122.652 kb on - strand, within GFF3298at 122.700 kb on - strand, within GFF3298at 122.774 kb on + strand, within GFF3298at 122.775 kb on - strand, within GFF3298at 123.011 kb on + strand, within GFF3298at 123.011 kb on + strand, within GFF3298at 123.075 kb on - strand, within GFF3298at 123.075 kb on - strand, within GFF3298at 123.075 kb on - strand, within GFF3298at 123.075 kb on - strand, within GFF3298at 123.245 kb on + strandat 123.245 kb on + strandat 123.246 kb on - strandat 123.246 kb on - strandat 123.246 kb on - strandat 123.294 kb on + strandat 123.306 kb on + strandat 123.307 kb on - strandat 123.307 kb on - strandat 123.307 kb on - strandat 123.307 kb on - strandat 123.398 kb on + strandat 123.399 kb on - strandat 123.575 kb on + strand, within GFF3299at 123.576 kb on - strand, within GFF3299at 123.576 kb on - strand, within GFF3299at 123.576 kb on - strand, within GFF3299at 123.576 kb on - strand, within GFF3299at 123.647 kb on + strand, within GFF3299at 123.647 kb on + strand, within GFF3299at 123.648 kb on - strand, within GFF3299at 123.648 kb on - strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 124.020 kb on - strand, within GFF3299at 124.020 kb on - strand, within GFF3299at 124.020 kb on - strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.062 kb on - strand, within GFF3299at 124.062 kb on - strand, within GFF3299at 124.236 kb on - strandat 124.305 kb on + strandat 124.306 kb on - strandat 124.306 kb on - strandat 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.512 kb on + strand, within GFF3300at 124.513 kb on - strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.630 kb on - strand, within GFF3300at 124.630 kb on - strand, within GFF3300at 124.630 kb on - strand, within GFF3300at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.117 kb on + strand, within GFF3301at 125.117 kb on + strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.177 kb on + strand, within GFF3301at 125.178 kb on - strand, within GFF3301

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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122,322 - GFF3298 0.16 -1.2
122,322 - GFF3298 0.16 +0.3
122,322 - GFF3298 0.16 -0.1
122,322 - GFF3298 0.16 -0.3
122,322 - GFF3298 0.16 +0.4
122,322 - GFF3298 0.16 -0.7
122,322 - GFF3298 0.16 -0.5
122,431 + GFF3298 0.26 -0.3
122,431 + GFF3298 0.26 +1.1
122,431 + GFF3298 0.26 -0.6
122,431 + GFF3298 0.26 -2.0
122,432 - GFF3298 0.26 +1.1
122,432 - GFF3298 0.26 +0.4
122,432 - GFF3298 0.26 -0.6
122,554 + GFF3298 0.37 -0.2
122,554 + GFF3298 0.37 -1.4
122,554 + GFF3298 0.37 +0.4
122,554 + GFF3298 0.37 +0.4
122,554 + GFF3298 0.37 +0.5
122,554 + GFF3298 0.37 -1.2
122,554 + GFF3298 0.37 +1.0
122,554 + GFF3298 0.37 +1.4
122,554 + GFF3298 0.37 -1.2
122,554 + GFF3298 0.37 -0.3
122,554 + GFF3298 0.37 -1.0
122,554 + GFF3298 0.37 +0.0
122,554 + GFF3298 0.37 +1.1
122,554 + GFF3298 0.37 -1.0
122,554 + GFF3298 0.37 +1.6
122,554 + GFF3298 0.37 -0.6
122,554 + GFF3298 0.37 -0.3
122,555 - GFF3298 0.37 +0.0
122,555 - GFF3298 0.37 +0.6
122,555 - GFF3298 0.37 +0.6
122,555 - GFF3298 0.37 -0.9
122,555 - GFF3298 0.37 -0.1
122,555 - GFF3298 0.37 -0.4
122,555 - GFF3298 0.37 +1.3
122,555 - GFF3298 0.37 -0.0
122,555 - GFF3298 0.37 -0.8
122,555 - GFF3298 0.37 +0.6
122,597 + GFF3298 0.41 +0.7
122,597 + GFF3298 0.41 +0.1
122,598 - GFF3298 0.41 -0.8
122,598 - GFF3298 0.41 -0.7
122,651 + GFF3298 0.46 -1.0
122,651 + GFF3298 0.46 -0.0
122,652 - GFF3298 0.46 +2.0
122,652 - GFF3298 0.46 +0.4
122,700 - GFF3298 0.51 +0.7
122,774 + GFF3298 0.58 -2.7
122,775 - GFF3298 0.58 -1.0
123,011 + GFF3298 0.79 +1.5
123,011 + GFF3298 0.79 +1.3
123,075 - GFF3298 0.85 -0.4
123,075 - GFF3298 0.85 +1.5
123,075 - GFF3298 0.85 -1.0
123,075 - GFF3298 0.85 -0.5
123,245 + +0.7
123,245 + -0.4
123,246 - -0.7
123,246 - +0.0
123,246 - +0.2
123,294 + -0.8
123,306 + -0.1
123,307 - -0.7
123,307 - -1.5
123,307 - -1.6
123,307 - -0.4
123,398 + -0.7
123,399 - -1.5
123,575 + GFF3299 0.28 -0.4
123,576 - GFF3299 0.28 +0.4
123,576 - GFF3299 0.28 -0.8
123,576 - GFF3299 0.28 +0.6
123,576 - GFF3299 0.28 -0.5
123,647 + GFF3299 0.36 -0.3
123,647 + GFF3299 0.36 +0.2
123,648 - GFF3299 0.36 +1.8
123,648 - GFF3299 0.36 +0.8
123,968 + GFF3299 0.72 +0.2
123,968 + GFF3299 0.72 -0.3
123,968 + GFF3299 0.72 +0.3
123,968 + GFF3299 0.72 +0.3
123,968 + GFF3299 0.72 +0.5
123,968 + GFF3299 0.72 -1.7
123,968 + GFF3299 0.72 +0.5
123,968 + GFF3299 0.72 -0.0
123,968 + GFF3299 0.72 +0.7
123,968 + GFF3299 0.72 +0.7
123,968 + GFF3299 0.72 +0.6
123,968 + GFF3299 0.72 -0.5
123,968 + GFF3299 0.72 -0.1
123,968 + GFF3299 0.72 +0.0
123,968 + GFF3299 0.72 -0.9
123,968 + GFF3299 0.72 +0.0
123,969 - GFF3299 0.72 +0.7
123,969 - GFF3299 0.72 +0.5
123,969 - GFF3299 0.72 -0.2
123,969 - GFF3299 0.72 -0.0
123,969 - GFF3299 0.72 +1.0
123,969 - GFF3299 0.72 -0.5
123,969 - GFF3299 0.72 +0.3
123,969 - GFF3299 0.72 -1.5
123,969 - GFF3299 0.72 +0.2
123,969 - GFF3299 0.72 +1.6
123,969 - GFF3299 0.72 +0.2
123,969 - GFF3299 0.72 +0.6
123,969 - GFF3299 0.72 +0.0
123,969 - GFF3299 0.72 -0.2
123,969 - GFF3299 0.72 -0.0
124,020 - GFF3299 0.78 +0.1
124,020 - GFF3299 0.78 +0.1
124,020 - GFF3299 0.78 +0.1
124,061 + GFF3299 0.82 -2.4
124,061 + GFF3299 0.82 +0.5
124,061 + GFF3299 0.82 -0.5
124,061 + GFF3299 0.82 -0.3
124,062 - GFF3299 0.82 -0.5
124,062 - GFF3299 0.82 -1.5
124,236 - -0.2
124,305 + +0.0
124,306 - +0.8
124,306 - +0.0
124,386 + GFF3300 0.22 +0.6
124,386 + GFF3300 0.22 -0.1
124,386 + GFF3300 0.22 -1.2
124,386 + GFF3300 0.22 +0.0
124,386 + GFF3300 0.22 +0.7
124,386 + GFF3300 0.22 -0.3
124,386 + GFF3300 0.22 -1.2
124,387 - GFF3300 0.22 +0.5
124,387 - GFF3300 0.22 +0.0
124,387 - GFF3300 0.22 +0.1
124,387 - GFF3300 0.22 +0.7
124,387 - GFF3300 0.22 -0.2
124,387 - GFF3300 0.22 -0.2
124,387 - GFF3300 0.22 -0.7
124,387 - GFF3300 0.22 +0.1
124,512 + GFF3300 0.44 -0.4
124,513 - GFF3300 0.44 -0.4
124,629 + GFF3300 0.65 -0.2
124,629 + GFF3300 0.65 -0.3
124,629 + GFF3300 0.65 +0.6
124,629 + GFF3300 0.65 +0.1
124,630 - GFF3300 0.65 +0.0
124,630 - GFF3300 0.65 +1.7
124,630 - GFF3300 0.65 +1.1
125,069 + GFF3301 0.18 +0.1
125,069 + GFF3301 0.18 -0.5
125,069 + GFF3301 0.18 -0.5
125,069 + GFF3301 0.18 +0.2
125,069 + GFF3301 0.18 +0.1
125,069 + GFF3301 0.18 +1.4
125,069 + GFF3301 0.18 -0.3
125,069 + GFF3301 0.18 +0.0
125,069 + GFF3301 0.18 -0.1
125,069 + GFF3301 0.18 +1.3
125,069 + GFF3301 0.18 -0.3
125,069 + GFF3301 0.18 -0.3
125,070 - GFF3301 0.18 +0.9
125,070 - GFF3301 0.18 +0.0
125,070 - GFF3301 0.18 +0.3
125,070 - GFF3301 0.18 +0.4
125,070 - GFF3301 0.18 -0.9
125,070 - GFF3301 0.18 -0.0
125,117 + GFF3301 0.21 -1.9
125,117 + GFF3301 0.21 +1.0
125,118 - GFF3301 0.21 -0.1
125,118 - GFF3301 0.21 +0.7
125,118 - GFF3301 0.21 -1.3
125,118 - GFF3301 0.21 +0.1
125,162 + GFF3301 0.24 -0.7
125,162 + GFF3301 0.24 +0.4
125,162 + GFF3301 0.24 +1.0
125,162 + GFF3301 0.24 -0.3
125,162 + GFF3301 0.24 +0.3
125,162 + GFF3301 0.24 -0.7
125,163 - GFF3301 0.24 -0.5
125,163 - GFF3301 0.24 -0.4
125,163 - GFF3301 0.24 +1.0
125,163 - GFF3301 0.24 +0.5
125,163 - GFF3301 0.24 +0.2
125,163 - GFF3301 0.24 +0.0
125,163 - GFF3301 0.24 -1.3
125,163 - GFF3301 0.24 -0.5
125,163 - GFF3301 0.24 +0.4
125,163 - GFF3301 0.24 -0.3
125,177 + GFF3301 0.25 -0.6
125,178 - GFF3301 0.25 -0.5

Or see this region's nucleotide sequence