Strain Fitness in Variovorax sp. SCN45 around GFF3182

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3180 and GFF3181 are separated by 8 nucleotidesGFF3181 and GFF3182 overlap by 4 nucleotidesGFF3182 and GFF3183 are separated by 33 nucleotidesGFF3183 and GFF3184 are separated by 70 nucleotides GFF3180 - FIG00348182: hypothetical protein, at 622,660 to 623,316 GFF3180 GFF3181 - FIG005069: Hypothetical protein, at 623,325 to 624,128 GFF3181 GFF3182 - Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069, at 624,125 to 625,171 GFF3182 GFF3183 - no description, at 625,205 to 625,480 GFF3183 GFF3184 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 625,551 to 627,512 GFF3184 Position (kb) 624 625 626Strain fitness (log2 ratio) -2 -1 0 1 2at 623.389 kb on + strandat 623.390 kb on - strandat 623.390 kb on - strandat 623.566 kb on + strand, within GFF3181at 623.566 kb on + strand, within GFF3181at 623.566 kb on + strand, within GFF3181at 623.584 kb on + strand, within GFF3181at 623.585 kb on - strand, within GFF3181at 623.803 kb on + strand, within GFF3181at 623.803 kb on + strand, within GFF3181at 623.804 kb on - strand, within GFF3181at 623.804 kb on - strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.981 kb on - strand, within GFF3181at 623.981 kb on - strand, within GFF3181at 623.981 kb on - strand, within GFF3181at 624.004 kb on + strand, within GFF3181at 624.004 kb on + strand, within GFF3181at 624.005 kb on - strand, within GFF3181at 624.255 kb on + strand, within GFF3182at 624.255 kb on + strand, within GFF3182at 624.333 kb on + strand, within GFF3182at 624.432 kb on + strand, within GFF3182at 624.433 kb on - strand, within GFF3182at 624.433 kb on - strand, within GFF3182at 624.433 kb on - strand, within GFF3182at 624.433 kb on - strand, within GFF3182at 624.694 kb on - strand, within GFF3182at 624.904 kb on - strand, within GFF3182at 624.954 kb on + strand, within GFF3182at 624.954 kb on + strand, within GFF3182at 624.955 kb on - strand, within GFF3182at 625.467 kb on + strandat 625.467 kb on + strandat 625.467 kb on + strandat 625.467 kb on + strandat 625.467 kb on + strandat 625.467 kb on + strandat 625.467 kb on + strandat 625.468 kb on - strandat 625.468 kb on - strandat 625.468 kb on - strandat 625.468 kb on - strandat 625.468 kb on - strandat 625.468 kb on - strandat 625.468 kb on - strandat 625.468 kb on - strandat 625.468 kb on - strandat 625.468 kb on - strandat 625.468 kb on - strandat 625.471 kb on + strandat 625.471 kb on + strandat 625.471 kb on + strandat 625.472 kb on - strandat 625.472 kb on - strandat 625.472 kb on - strandat 625.472 kb on - strandat 625.704 kb on + strandat 625.767 kb on + strand, within GFF3184at 625.767 kb on + strand, within GFF3184at 625.768 kb on - strand, within GFF3184at 625.768 kb on - strand, within GFF3184at 625.884 kb on + strand, within GFF3184at 625.884 kb on + strand, within GFF3184at 625.885 kb on - strand, within GFF3184at 625.908 kb on + strand, within GFF3184at 625.909 kb on - strand, within GFF3184at 626.034 kb on + strand, within GFF3184at 626.034 kb on + strand, within GFF3184at 626.035 kb on - strand, within GFF3184

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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623,389 + +0.1
623,390 - -0.1
623,390 - -0.5
623,566 + GFF3181 0.30 -0.1
623,566 + GFF3181 0.30 +0.3
623,566 + GFF3181 0.30 -0.2
623,584 + GFF3181 0.32 +0.5
623,585 - GFF3181 0.32 -1.7
623,803 + GFF3181 0.59 +0.1
623,803 + GFF3181 0.59 +0.1
623,804 - GFF3181 0.60 +0.4
623,804 - GFF3181 0.60 -0.1
623,896 + GFF3181 0.71 -0.4
623,896 + GFF3181 0.71 -1.1
623,896 + GFF3181 0.71 -0.4
623,896 + GFF3181 0.71 -0.5
623,896 + GFF3181 0.71 +0.2
623,896 + GFF3181 0.71 +0.2
623,896 + GFF3181 0.71 -0.7
623,896 + GFF3181 0.71 -0.7
623,897 - GFF3181 0.71 +2.0
623,897 - GFF3181 0.71 -0.7
623,897 - GFF3181 0.71 -0.3
623,897 - GFF3181 0.71 -0.1
623,897 - GFF3181 0.71 -1.3
623,897 - GFF3181 0.71 +0.3
623,897 - GFF3181 0.71 -0.3
623,897 - GFF3181 0.71 -0.5
623,897 - GFF3181 0.71 -0.6
623,981 - GFF3181 0.82 -0.9
623,981 - GFF3181 0.82 +0.4
623,981 - GFF3181 0.82 -0.3
624,004 + GFF3181 0.84 -0.1
624,004 + GFF3181 0.84 -0.0
624,005 - GFF3181 0.85 -0.9
624,255 + GFF3182 0.12 -0.4
624,255 + GFF3182 0.12 -1.1
624,333 + GFF3182 0.20 -1.2
624,432 + GFF3182 0.29 +0.7
624,433 - GFF3182 0.29 -0.6
624,433 - GFF3182 0.29 -1.2
624,433 - GFF3182 0.29 -1.9
624,433 - GFF3182 0.29 -0.9
624,694 - GFF3182 0.54 +0.6
624,904 - GFF3182 0.74 -0.4
624,954 + GFF3182 0.79 +0.4
624,954 + GFF3182 0.79 -0.6
624,955 - GFF3182 0.79 +0.2
625,467 + -0.3
625,467 + -0.5
625,467 + +0.8
625,467 + -0.2
625,467 + -0.3
625,467 + -0.3
625,467 + +0.4
625,468 - -0.0
625,468 - -0.6
625,468 - -0.5
625,468 - -0.6
625,468 - -0.8
625,468 - +1.1
625,468 - -0.1
625,468 - +0.7
625,468 - -1.0
625,468 - -0.6
625,468 - -0.3
625,471 + -0.9
625,471 + -0.3
625,471 + +0.7
625,472 - +0.8
625,472 - -0.5
625,472 - +0.4
625,472 - -0.5
625,704 + +0.4
625,767 + GFF3184 0.11 -0.9
625,767 + GFF3184 0.11 +1.0
625,768 - GFF3184 0.11 -0.6
625,768 - GFF3184 0.11 -0.6
625,884 + GFF3184 0.17 -0.3
625,884 + GFF3184 0.17 +0.2
625,885 - GFF3184 0.17 -1.1
625,908 + GFF3184 0.18 -0.8
625,909 - GFF3184 0.18 -1.2
626,034 + GFF3184 0.25 +0.0
626,034 + GFF3184 0.25 -0.6
626,035 - GFF3184 0.25 -1.2

Or see this region's nucleotide sequence