Strain Fitness in Variovorax sp. SCN45 around GFF2942

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2941 and GFF2942 are separated by 21 nucleotidesGFF2942 and GFF2943 overlap by 4 nucleotidesGFF2943 and GFF2944 are separated by 39 nucleotides GFF2941 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 367,511 to 368,617 GFF2941 GFF2942 - Epoxide hydrolase (EC 3.3.2.9), at 368,639 to 369,559 GFF2942 GFF2943 - S-formylglutathione hydrolase (EC 3.1.2.12), at 369,556 to 370,434 GFF2943 GFF2944 - Acetyltransferase, at 370,474 to 370,977 GFF2944 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.641 kb on - strand, within GFF2941at 367.641 kb on - strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.772 kb on + strand, within GFF2941at 367.772 kb on + strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.282 kb on + strand, within GFF2941at 368.282 kb on + strand, within GFF2941at 368.283 kb on - strand, within GFF2941at 368.283 kb on - strand, within GFF2941at 368.283 kb on - strand, within GFF2941at 368.495 kb on + strand, within GFF2941at 368.495 kb on + strand, within GFF2941at 368.495 kb on + strand, within GFF2941at 368.495 kb on + strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.612 kb on + strandat 368.612 kb on + strandat 368.612 kb on + strandat 368.613 kb on - strandat 368.613 kb on - strandat 368.693 kb on + strandat 368.693 kb on + strandat 368.693 kb on + strandat 368.693 kb on + strandat 368.694 kb on - strandat 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.766 kb on - strand, within GFF2942at 368.766 kb on - strand, within GFF2942at 368.766 kb on - strand, within GFF2942at 368.766 kb on - strand, within GFF2942at 368.766 kb on - strand, within GFF2942at 368.819 kb on + strand, within GFF2942at 368.819 kb on + strand, within GFF2942at 368.820 kb on - strand, within GFF2942at 368.820 kb on - strand, within GFF2942at 368.831 kb on + strand, within GFF2942at 369.032 kb on + strand, within GFF2942at 369.032 kb on + strand, within GFF2942at 369.032 kb on + strand, within GFF2942at 369.032 kb on + strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.098 kb on + strand, within GFF2942at 369.099 kb on - strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.275 kb on + strand, within GFF2942at 369.275 kb on + strand, within GFF2942at 369.275 kb on + strand, within GFF2942at 369.275 kb on + strand, within GFF2942at 369.667 kb on + strand, within GFF2943at 369.668 kb on - strand, within GFF2943at 369.712 kb on + strand, within GFF2943at 369.712 kb on + strand, within GFF2943at 369.712 kb on + strand, within GFF2943at 369.713 kb on - strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.889 kb on + strand, within GFF2943at 369.890 kb on - strand, within GFF2943at 369.890 kb on - strand, within GFF2943at 369.890 kb on - strand, within GFF2943at 369.890 kb on - strand, within GFF2943at 370.144 kb on + strand, within GFF2943at 370.145 kb on - strand, within GFF2943at 370.357 kb on + strandat 370.357 kb on + strandat 370.358 kb on - strandat 370.369 kb on + strandat 370.369 kb on + strandat 370.369 kb on + strandat 370.369 kb on + strandat 370.370 kb on - strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.470 kb on + strandat 370.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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367,640 + GFF2941 0.12 -0.3
367,640 + GFF2941 0.12 +0.6
367,640 + GFF2941 0.12 +0.1
367,640 + GFF2941 0.12 -0.3
367,640 + GFF2941 0.12 -0.4
367,640 + GFF2941 0.12 +0.1
367,640 + GFF2941 0.12 +0.1
367,641 - GFF2941 0.12 -1.0
367,641 - GFF2941 0.12 +0.3
367,643 + GFF2941 0.12 +0.2
367,643 + GFF2941 0.12 -0.8
367,643 + GFF2941 0.12 +0.2
367,643 + GFF2941 0.12 -1.0
367,643 + GFF2941 0.12 +1.7
367,643 + GFF2941 0.12 -0.7
367,643 + GFF2941 0.12 -0.4
367,643 + GFF2941 0.12 +0.4
367,643 + GFF2941 0.12 +0.6
367,643 + GFF2941 0.12 +1.3
367,643 + GFF2941 0.12 -0.6
367,643 + GFF2941 0.12 +1.0
367,644 - GFF2941 0.12 -0.5
367,644 - GFF2941 0.12 -1.1
367,644 - GFF2941 0.12 +0.0
367,644 - GFF2941 0.12 +0.0
367,644 - GFF2941 0.12 -0.4
367,644 - GFF2941 0.12 +0.4
367,644 - GFF2941 0.12 +0.2
367,644 - GFF2941 0.12 -0.4
367,644 - GFF2941 0.12 -0.4
367,644 - GFF2941 0.12 -0.5
367,772 + GFF2941 0.24 -1.8
367,772 + GFF2941 0.24 +0.1
367,773 - GFF2941 0.24 -0.6
367,773 - GFF2941 0.24 +0.6
367,773 - GFF2941 0.24 +0.3
367,773 - GFF2941 0.24 +0.1
367,773 - GFF2941 0.24 -0.3
367,913 + GFF2941 0.36 +0.1
367,913 + GFF2941 0.36 -0.1
367,913 + GFF2941 0.36 -0.4
367,913 + GFF2941 0.36 +0.7
367,913 + GFF2941 0.36 -1.2
367,913 + GFF2941 0.36 +0.1
367,913 + GFF2941 0.36 +1.2
367,913 + GFF2941 0.36 -1.0
367,913 + GFF2941 0.36 -0.1
367,913 + GFF2941 0.36 +1.0
367,914 - GFF2941 0.36 +1.0
367,914 - GFF2941 0.36 -0.0
367,914 - GFF2941 0.36 +1.3
367,914 - GFF2941 0.36 +0.7
367,914 - GFF2941 0.36 -0.1
367,914 - GFF2941 0.36 -0.1
367,914 - GFF2941 0.36 -0.2
367,914 - GFF2941 0.36 -1.3
367,914 - GFF2941 0.36 +0.1
367,914 - GFF2941 0.36 +0.4
367,914 - GFF2941 0.36 -0.6
367,914 - GFF2941 0.36 +0.2
367,914 - GFF2941 0.36 +1.7
367,914 - GFF2941 0.36 -1.1
367,914 - GFF2941 0.36 -0.1
367,940 + GFF2941 0.39 +1.0
367,940 + GFF2941 0.39 -0.7
367,940 + GFF2941 0.39 -0.9
367,940 + GFF2941 0.39 -0.3
367,940 + GFF2941 0.39 +0.4
367,941 - GFF2941 0.39 -1.5
367,941 - GFF2941 0.39 -0.2
367,941 - GFF2941 0.39 +0.4
367,941 - GFF2941 0.39 -0.8
367,941 - GFF2941 0.39 +0.3
367,941 - GFF2941 0.39 -0.2
367,941 - GFF2941 0.39 -1.6
368,006 + GFF2941 0.45 -0.2
368,006 + GFF2941 0.45 +0.8
368,006 + GFF2941 0.45 -0.3
368,006 + GFF2941 0.45 +1.2
368,006 + GFF2941 0.45 -1.0
368,006 + GFF2941 0.45 +0.2
368,007 - GFF2941 0.45 -0.5
368,007 - GFF2941 0.45 +0.4
368,007 - GFF2941 0.45 -0.3
368,007 - GFF2941 0.45 -1.9
368,007 - GFF2941 0.45 -0.2
368,007 - GFF2941 0.45 +0.1
368,007 - GFF2941 0.45 +0.4
368,282 + GFF2941 0.70 -1.2
368,282 + GFF2941 0.70 +0.6
368,283 - GFF2941 0.70 +0.1
368,283 - GFF2941 0.70 +0.1
368,283 - GFF2941 0.70 -0.7
368,495 + GFF2941 0.89 -0.5
368,495 + GFF2941 0.89 -0.5
368,495 + GFF2941 0.89 -1.0
368,495 + GFF2941 0.89 -0.0
368,496 - GFF2941 0.89 -0.9
368,496 - GFF2941 0.89 -1.1
368,496 - GFF2941 0.89 -0.1
368,496 - GFF2941 0.89 -1.1
368,496 - GFF2941 0.89 +0.6
368,496 - GFF2941 0.89 +0.4
368,496 - GFF2941 0.89 +0.7
368,496 - GFF2941 0.89 -2.1
368,496 - GFF2941 0.89 +0.3
368,496 - GFF2941 0.89 -0.6
368,612 + +1.7
368,612 + +0.2
368,612 + +0.9
368,613 - +0.3
368,613 - -0.1
368,693 + -0.3
368,693 + -1.5
368,693 + -0.8
368,693 + -0.5
368,694 - +0.2
368,765 + GFF2942 0.14 -0.3
368,765 + GFF2942 0.14 -0.3
368,765 + GFF2942 0.14 -0.7
368,765 + GFF2942 0.14 +0.4
368,765 + GFF2942 0.14 -2.5
368,765 + GFF2942 0.14 +1.7
368,765 + GFF2942 0.14 +1.5
368,765 + GFF2942 0.14 -0.4
368,765 + GFF2942 0.14 -0.9
368,765 + GFF2942 0.14 -0.8
368,765 + GFF2942 0.14 -1.5
368,765 + GFF2942 0.14 -1.5
368,766 - GFF2942 0.14 -0.3
368,766 - GFF2942 0.14 +0.6
368,766 - GFF2942 0.14 -1.5
368,766 - GFF2942 0.14 +2.3
368,766 - GFF2942 0.14 +0.4
368,819 + GFF2942 0.20 -0.8
368,819 + GFF2942 0.20 -0.6
368,820 - GFF2942 0.20 -0.9
368,820 - GFF2942 0.20 +0.3
368,831 + GFF2942 0.21 +0.6
369,032 + GFF2942 0.43 -1.5
369,032 + GFF2942 0.43 +0.4
369,032 + GFF2942 0.43 -0.5
369,032 + GFF2942 0.43 +0.7
369,033 - GFF2942 0.43 +0.0
369,033 - GFF2942 0.43 +0.0
369,033 - GFF2942 0.43 -0.1
369,033 - GFF2942 0.43 -0.6
369,033 - GFF2942 0.43 -0.2
369,033 - GFF2942 0.43 -1.3
369,033 - GFF2942 0.43 -0.5
369,098 + GFF2942 0.50 +0.5
369,099 - GFF2942 0.50 +0.2
369,104 + GFF2942 0.50 -1.1
369,104 + GFF2942 0.50 -1.1
369,104 + GFF2942 0.50 +0.4
369,104 + GFF2942 0.50 -0.3
369,104 + GFF2942 0.50 -0.4
369,104 + GFF2942 0.50 -0.1
369,104 + GFF2942 0.50 +0.3
369,104 + GFF2942 0.50 -1.7
369,105 - GFF2942 0.51 +0.4
369,105 - GFF2942 0.51 +0.0
369,105 - GFF2942 0.51 -1.1
369,105 - GFF2942 0.51 -2.0
369,105 - GFF2942 0.51 +0.5
369,105 - GFF2942 0.51 +1.1
369,105 - GFF2942 0.51 +1.0
369,105 - GFF2942 0.51 +1.4
369,105 - GFF2942 0.51 -0.3
369,105 - GFF2942 0.51 +0.3
369,105 - GFF2942 0.51 +0.1
369,105 - GFF2942 0.51 +0.2
369,107 + GFF2942 0.51 -0.1
369,107 + GFF2942 0.51 +0.8
369,107 + GFF2942 0.51 +0.2
369,107 + GFF2942 0.51 -1.2
369,107 + GFF2942 0.51 -0.3
369,107 + GFF2942 0.51 -0.2
369,107 + GFF2942 0.51 +0.7
369,108 - GFF2942 0.51 +0.3
369,108 - GFF2942 0.51 +0.1
369,108 - GFF2942 0.51 +0.1
369,108 - GFF2942 0.51 -0.1
369,108 - GFF2942 0.51 -0.5
369,108 - GFF2942 0.51 +1.0
369,108 - GFF2942 0.51 -0.2
369,275 + GFF2942 0.69 +0.4
369,275 + GFF2942 0.69 -0.4
369,275 + GFF2942 0.69 +0.9
369,275 + GFF2942 0.69 +1.1
369,667 + GFF2943 0.13 -0.6
369,668 - GFF2943 0.13 -0.3
369,712 + GFF2943 0.18 +0.5
369,712 + GFF2943 0.18 -0.0
369,712 + GFF2943 0.18 -0.5
369,713 - GFF2943 0.18 -0.3
369,889 + GFF2943 0.38 -0.6
369,889 + GFF2943 0.38 -0.5
369,889 + GFF2943 0.38 -0.5
369,889 + GFF2943 0.38 +0.2
369,889 + GFF2943 0.38 +0.5
369,889 + GFF2943 0.38 -1.3
369,890 - GFF2943 0.38 +0.0
369,890 - GFF2943 0.38 -0.7
369,890 - GFF2943 0.38 -0.7
369,890 - GFF2943 0.38 -1.0
370,144 + GFF2943 0.67 -0.8
370,145 - GFF2943 0.67 -0.5
370,357 + -1.0
370,357 + -0.6
370,358 - +0.0
370,369 + +0.1
370,369 + -0.5
370,369 + -0.7
370,369 + -0.4
370,370 - +0.8
370,372 + -0.8
370,372 + -1.6
370,372 + +0.4
370,372 + -1.3
370,372 + -1.3
370,372 + +0.4
370,372 + -0.2
370,372 + +0.9
370,372 + -1.2
370,372 + +0.2
370,372 + +0.1
370,373 - -0.5
370,373 - +0.1
370,373 - +0.1
370,373 - -0.1
370,373 - -1.1
370,373 - -0.5
370,373 - -0.3
370,373 - +1.7
370,373 - +0.7
370,373 - -0.5
370,373 - +0.3
370,373 - +0.3
370,470 + -0.3
370,471 - -0.4

Or see this region's nucleotide sequence