Strain Fitness in Variovorax sp. SCN45 around GFF2889

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
313,799	+		GFF2887	0.69	-0.3
313,800	-		GFF2887	0.69	-0.1
313,800	-		GFF2887	0.69	+1.2
313,800	-		GFF2887	0.69	-0.5
313,800	-		GFF2887	0.69	-0.1
313,998	-				-0.7
313,998	-				+0.7
314,394	+		GFF2888	0.51	+0.7
314,394	+		GFF2888	0.51	-2.8
314,394	+		GFF2888	0.51	-1.2
314,395	-		GFF2888	0.51	-0.1
314,395	-		GFF2888	0.51	-0.8
314,718	-				-0.9
314,718	-				-1.5
314,761	+				-0.9
314,761	+				+1.2
314,761	+				-0.1
314,761	+				-0.1
314,761	+				+0.4
314,761	+				-1.8
314,762	-				+0.3
314,762	-				-0.2
314,762	-				-0.2
314,762	-				-2.2
314,762	-				+0.9
314,762	-				+0.1
314,762	-				+0.4
314,762	-				-0.2
315,041	-		GFF2889	0.41	+0.7
315,603	+		GFF2890	0.12	-0.8
315,603	+		GFF2890	0.12	+0.0
315,604	-		GFF2890	0.12	-0.8
315,673	-		GFF2890	0.19	-0.3
315,813	+		GFF2890	0.33	+0.0
315,813	+		GFF2890	0.33	-0.8
315,813	+		GFF2890	0.33	-1.4
315,814	-		GFF2890	0.33	-0.4
315,814	-		GFF2890	0.33	-1.6
315,814	-		GFF2890	0.33	-1.3
315,814	-		GFF2890	0.33	-0.2
315,814	-		GFF2890	0.33	+0.3
315,960	+		GFF2890	0.47	-0.3
315,961	-		GFF2890	0.47	-0.0
315,981	+		GFF2890	0.49	+0.1
315,982	-		GFF2890	0.49	-0.4
316,246	-		GFF2890	0.76	-0.1
316,297	-		GFF2890	0.81	-0.1
316,297	-		GFF2890	0.81	-1.8