Strain Fitness in Variovorax sp. SCN45 around GFF2886

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2885 and GFF2886 are separated by 144 nucleotidesGFF2886 and GFF2887 overlap by 4 nucleotidesGFF2887 and GFF2888 are separated by 7 nucleotides GFF2885 - Transcriptional regulator, LysR family, at 311,351 to 312,253 GFF2885 GFF2886 - Metallo-beta-lactamase superfamily protein PA0057, at 312,398 to 313,297 GFF2886 GFF2887 - Thioredoxin-like protein clustered with PA0057, at 313,294 to 314,025 GFF2887 GFF2888 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,033 to 314,737 GFF2888 Position (kb) 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 311.612 kb on + strand, within GFF2885at 311.613 kb on - strand, within GFF2885at 311.613 kb on - strand, within GFF2885at 311.722 kb on + strand, within GFF2885at 311.723 kb on - strand, within GFF2885at 311.843 kb on + strand, within GFF2885at 311.843 kb on + strand, within GFF2885at 311.843 kb on + strand, within GFF2885at 311.844 kb on - strand, within GFF2885at 311.844 kb on - strand, within GFF2885at 312.119 kb on + strand, within GFF2885at 312.119 kb on + strand, within GFF2885at 312.337 kb on + strandat 312.337 kb on + strandat 312.337 kb on + strandat 312.497 kb on + strand, within GFF2886at 312.497 kb on + strand, within GFF2886at 312.497 kb on + strand, within GFF2886at 312.497 kb on + strand, within GFF2886at 312.497 kb on + strand, within GFF2886at 312.497 kb on + strand, within GFF2886at 312.498 kb on - strand, within GFF2886at 312.498 kb on - strand, within GFF2886at 312.498 kb on - strand, within GFF2886at 312.498 kb on - strand, within GFF2886at 312.498 kb on - strand, within GFF2886at 312.650 kb on + strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.651 kb on - strand, within GFF2886at 312.674 kb on + strand, within GFF2886at 312.674 kb on + strand, within GFF2886at 312.674 kb on + strand, within GFF2886at 312.675 kb on - strand, within GFF2886at 312.675 kb on - strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.677 kb on + strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.678 kb on - strand, within GFF2886at 312.980 kb on - strand, within GFF2886at 313.082 kb on + strand, within GFF2886at 313.082 kb on + strand, within GFF2886at 313.083 kb on - strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.112 kb on + strand, within GFF2886at 313.146 kb on - strand, within GFF2886at 313.146 kb on - strand, within GFF2886at 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.330 kb on + strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.331 kb on - strandat 313.360 kb on + strandat 313.360 kb on + strandat 313.360 kb on + strandat 313.360 kb on + strandat 313.360 kb on + strandat 313.361 kb on - strandat 313.361 kb on - strandat 313.361 kb on - strandat 313.361 kb on - strandat 313.361 kb on - strandat 313.480 kb on + strand, within GFF2887at 313.481 kb on - strand, within GFF2887at 313.481 kb on - strand, within GFF2887at 313.540 kb on + strand, within GFF2887at 313.540 kb on + strand, within GFF2887at 313.540 kb on + strand, within GFF2887at 313.541 kb on - strand, within GFF2887at 313.541 kb on - strand, within GFF2887at 313.541 kb on - strand, within GFF2887at 313.541 kb on - strand, within GFF2887at 313.541 kb on - strand, within GFF2887at 313.672 kb on + strand, within GFF2887at 313.672 kb on + strand, within GFF2887at 313.672 kb on + strand, within GFF2887at 313.672 kb on + strand, within GFF2887at 313.673 kb on - strand, within GFF2887at 313.799 kb on + strand, within GFF2887at 313.800 kb on - strand, within GFF2887at 313.800 kb on - strand, within GFF2887at 313.800 kb on - strand, within GFF2887at 313.800 kb on - strand, within GFF2887at 313.998 kb on - strandat 313.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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311,612 + GFF2885 0.29 -0.7
311,613 - GFF2885 0.29 +1.2
311,613 - GFF2885 0.29 -0.3
311,722 + GFF2885 0.41 -0.4
311,723 - GFF2885 0.41 +0.0
311,843 + GFF2885 0.54 -1.1
311,843 + GFF2885 0.54 -0.6
311,843 + GFF2885 0.54 +1.1
311,844 - GFF2885 0.55 +0.5
311,844 - GFF2885 0.55 -0.0
312,119 + GFF2885 0.85 -2.4
312,119 + GFF2885 0.85 -1.3
312,337 + -2.8
312,337 + -0.3
312,337 + -0.9
312,497 + GFF2886 0.11 -1.2
312,497 + GFF2886 0.11 -0.6
312,497 + GFF2886 0.11 -0.4
312,497 + GFF2886 0.11 +0.1
312,497 + GFF2886 0.11 +1.1
312,497 + GFF2886 0.11 -0.1
312,498 - GFF2886 0.11 -0.8
312,498 - GFF2886 0.11 -0.2
312,498 - GFF2886 0.11 -0.6
312,498 - GFF2886 0.11 -0.3
312,498 - GFF2886 0.11 -1.2
312,650 + GFF2886 0.28 -0.7
312,651 - GFF2886 0.28 -0.5
312,651 - GFF2886 0.28 +0.2
312,651 - GFF2886 0.28 +0.0
312,651 - GFF2886 0.28 -0.7
312,651 - GFF2886 0.28 -1.4
312,651 - GFF2886 0.28 -1.6
312,651 - GFF2886 0.28 -0.9
312,674 + GFF2886 0.31 +0.3
312,674 + GFF2886 0.31 -1.3
312,674 + GFF2886 0.31 -0.4
312,675 - GFF2886 0.31 -0.2
312,675 - GFF2886 0.31 +1.3
312,677 + GFF2886 0.31 -0.3
312,677 + GFF2886 0.31 -0.1
312,677 + GFF2886 0.31 -0.2
312,677 + GFF2886 0.31 -1.1
312,677 + GFF2886 0.31 -2.4
312,677 + GFF2886 0.31 +1.2
312,678 - GFF2886 0.31 +0.5
312,678 - GFF2886 0.31 -0.4
312,678 - GFF2886 0.31 +0.5
312,678 - GFF2886 0.31 -0.4
312,678 - GFF2886 0.31 +0.1
312,678 - GFF2886 0.31 +0.5
312,980 - GFF2886 0.65 -1.2
313,082 + GFF2886 0.76 -2.9
313,082 + GFF2886 0.76 -0.1
313,083 - GFF2886 0.76 +0.1
313,112 + GFF2886 0.79 -0.1
313,112 + GFF2886 0.79 -0.1
313,112 + GFF2886 0.79 -1.4
313,112 + GFF2886 0.79 -0.1
313,112 + GFF2886 0.79 -0.4
313,146 - GFF2886 0.83 -0.2
313,146 - GFF2886 0.83 +0.1
313,330 + -1.2
313,330 + -0.2
313,330 + -0.7
313,330 + -0.1
313,330 + -0.7
313,330 + -1.2
313,330 + -1.9
313,330 + +0.2
313,330 + +0.5
313,330 + +1.3
313,330 + -0.3
313,330 + -0.5
313,330 + -0.2
313,331 - -0.6
313,331 - -0.6
313,331 - +0.5
313,331 - -0.9
313,331 - -0.4
313,331 - -0.9
313,331 - -0.7
313,331 - +0.8
313,331 - -1.3
313,331 - -0.2
313,331 - -0.3
313,331 - -0.2
313,331 - -1.1
313,331 - -0.4
313,331 - +2.2
313,331 - -0.8
313,331 - +0.3
313,360 + -1.5
313,360 + -1.2
313,360 + -0.5
313,360 + +0.2
313,360 + -0.5
313,361 - -1.6
313,361 - -0.1
313,361 - +0.8
313,361 - -0.1
313,361 - -0.2
313,480 + GFF2887 0.25 -0.4
313,481 - GFF2887 0.26 -0.3
313,481 - GFF2887 0.26 -1.6
313,540 + GFF2887 0.34 -0.7
313,540 + GFF2887 0.34 +0.5
313,540 + GFF2887 0.34 +0.7
313,541 - GFF2887 0.34 +0.7
313,541 - GFF2887 0.34 -0.5
313,541 - GFF2887 0.34 +1.7
313,541 - GFF2887 0.34 -0.2
313,541 - GFF2887 0.34 +0.0
313,672 + GFF2887 0.52 +0.2
313,672 + GFF2887 0.52 -0.6
313,672 + GFF2887 0.52 -1.3
313,672 + GFF2887 0.52 +0.0
313,673 - GFF2887 0.52 +3.0
313,799 + GFF2887 0.69 -0.3
313,800 - GFF2887 0.69 -0.1
313,800 - GFF2887 0.69 +1.2
313,800 - GFF2887 0.69 -0.5
313,800 - GFF2887 0.69 -0.1
313,998 - -0.7
313,998 - +0.7

Or see this region's nucleotide sequence