Strain Fitness in Variovorax sp. SCN45 around GFF279

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF276 and GFF277 are separated by 42 nucleotidesGFF277 and GFF278 are separated by 17 nucleotidesGFF278 and GFF279 are separated by 7 nucleotidesGFF279 and GFF280 are separated by 144 nucleotides GFF276 - no description, at 312,087 to 312,257 GFF276 GFF277 - HD domain protein, at 312,300 to 312,482 GFF277 GFF278 - O-methyltransferase Rv0190, at 312,500 to 313,180 GFF278 GFF279 - Uncharacterized MFS-type transporter, at 313,188 to 314,573 GFF279 GFF280 - BUG/TctC family periplasmic protein, at 314,718 to 315,692 GFF280 Position (kb) 313 314 315Strain fitness (log2 ratio) -2 -1 0 1 2at 312.250 kb on + strandat 312.250 kb on + strandat 312.250 kb on + strandat 312.250 kb on + strandat 312.250 kb on + strandat 312.250 kb on + strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.480 kb on + strandat 312.481 kb on - strandat 312.481 kb on - strandat 312.481 kb on - strandat 312.557 kb on + strandat 312.557 kb on + strandat 312.557 kb on + strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.732 kb on - strand, within GFF278at 312.732 kb on - strand, within GFF278at 312.732 kb on - strand, within GFF278at 312.953 kb on + strand, within GFF278at 312.953 kb on + strand, within GFF278at 312.953 kb on + strand, within GFF278at 312.953 kb on + strand, within GFF278at 312.953 kb on + strand, within GFF278at 312.954 kb on - strand, within GFF278at 312.954 kb on - strand, within GFF278at 312.954 kb on - strand, within GFF278at 312.954 kb on - strand, within GFF278at 312.954 kb on - strand, within GFF278at 313.179 kb on - strandat 313.513 kb on + strand, within GFF279at 313.546 kb on + strand, within GFF279at 313.546 kb on + strand, within GFF279at 313.546 kb on + strand, within GFF279at 313.546 kb on + strand, within GFF279at 313.547 kb on - strand, within GFF279at 313.547 kb on - strand, within GFF279at 313.547 kb on - strand, within GFF279at 313.547 kb on - strand, within GFF279at 313.555 kb on + strand, within GFF279at 313.555 kb on + strand, within GFF279at 313.555 kb on + strand, within GFF279at 313.789 kb on + strand, within GFF279at 313.789 kb on + strand, within GFF279at 313.789 kb on + strand, within GFF279at 313.789 kb on + strand, within GFF279at 313.790 kb on - strand, within GFF279at 313.790 kb on - strand, within GFF279at 313.790 kb on - strand, within GFF279at 313.854 kb on + strand, within GFF279at 313.855 kb on + strand, within GFF279at 313.855 kb on + strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279at 314.422 kb on + strand, within GFF279at 314.422 kb on + strand, within GFF279at 314.423 kb on - strand, within GFF279at 314.625 kb on - strandat 314.635 kb on + strandat 314.659 kb on - strandat 314.668 kb on + strandat 314.684 kb on + strandat 314.685 kb on - strandat 314.685 kb on - strandat 314.685 kb on - strandat 314.685 kb on - strandat 314.685 kb on - strandat 314.698 kb on + strandat 314.699 kb on - strandat 314.699 kb on - strandat 314.702 kb on + strandat 314.702 kb on + strandat 314.702 kb on + strandat 314.702 kb on + strandat 314.702 kb on + strandat 314.703 kb on - strandat 314.703 kb on - strandat 314.703 kb on - strandat 314.703 kb on - strandat 314.877 kb on + strand, within GFF280at 314.877 kb on + strand, within GFF280at 314.877 kb on + strand, within GFF280at 314.878 kb on - strand, within GFF280at 314.988 kb on + strand, within GFF280at 315.054 kb on + strand, within GFF280at 315.054 kb on + strand, within GFF280at 315.054 kb on + strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.201 kb on + strand, within GFF280at 315.201 kb on + strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.279 kb on + strand, within GFF280at 315.279 kb on + strand, within GFF280at 315.280 kb on - strand, within GFF280at 315.280 kb on - strand, within GFF280at 315.280 kb on - strand, within GFF280

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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312,250 + +0.0
312,250 + -0.4
312,250 + -0.6
312,250 + +0.4
312,250 + +1.0
312,250 + +0.9
312,251 - +0.6
312,251 - +0.6
312,251 - -0.5
312,251 - -1.0
312,251 - +1.4
312,251 - +0.4
312,251 - -1.7
312,251 - -0.2
312,352 + GFF277 0.28 -2.3
312,352 + GFF277 0.28 +0.3
312,352 + GFF277 0.28 -0.9
312,352 + GFF277 0.28 +0.4
312,352 + GFF277 0.28 +0.1
312,352 + GFF277 0.28 +0.9
312,352 + GFF277 0.28 -0.6
312,352 + GFF277 0.28 -0.6
312,352 + GFF277 0.28 -0.0
312,352 + GFF277 0.28 -0.7
312,352 + GFF277 0.28 +0.4
312,352 + GFF277 0.28 +0.8
312,352 + GFF277 0.28 -0.1
312,352 + GFF277 0.28 +0.2
312,352 + GFF277 0.28 +0.8
312,352 + GFF277 0.28 -0.1
312,352 + GFF277 0.28 -1.7
312,352 + GFF277 0.28 +0.1
312,352 + GFF277 0.28 -1.1
312,353 - GFF277 0.29 -1.4
312,353 - GFF277 0.29 -0.3
312,353 - GFF277 0.29 +0.4
312,353 - GFF277 0.29 +0.4
312,353 - GFF277 0.29 +0.4
312,353 - GFF277 0.29 -2.2
312,353 - GFF277 0.29 -0.3
312,353 - GFF277 0.29 -0.6
312,353 - GFF277 0.29 -0.0
312,353 - GFF277 0.29 +0.3
312,353 - GFF277 0.29 -1.4
312,353 - GFF277 0.29 +1.7
312,353 - GFF277 0.29 +0.3
312,353 - GFF277 0.29 -0.0
312,353 - GFF277 0.29 -0.8
312,353 - GFF277 0.29 -0.5
312,353 - GFF277 0.29 +0.4
312,480 + +0.5
312,481 - -0.6
312,481 - +0.8
312,481 - +2.4
312,557 + -0.9
312,557 + -1.3
312,557 + -0.6
312,558 - -1.6
312,558 - +0.1
312,558 - +0.6
312,558 - -0.9
312,558 - -1.2
312,558 - +0.5
312,558 - +1.4
312,732 - GFF278 0.34 +0.4
312,732 - GFF278 0.34 -0.6
312,732 - GFF278 0.34 +0.6
312,953 + GFF278 0.67 -0.2
312,953 + GFF278 0.67 -0.9
312,953 + GFF278 0.67 +0.3
312,953 + GFF278 0.67 +0.2
312,953 + GFF278 0.67 -0.0
312,954 - GFF278 0.67 +0.9
312,954 - GFF278 0.67 +0.2
312,954 - GFF278 0.67 -0.3
312,954 - GFF278 0.67 +0.9
312,954 - GFF278 0.67 +0.2
313,179 - +1.4
313,513 + GFF279 0.23 -0.4
313,546 + GFF279 0.26 -0.2
313,546 + GFF279 0.26 -1.5
313,546 + GFF279 0.26 -1.6
313,546 + GFF279 0.26 +1.0
313,547 - GFF279 0.26 -1.1
313,547 - GFF279 0.26 -0.1
313,547 - GFF279 0.26 +0.7
313,547 - GFF279 0.26 -0.6
313,555 + GFF279 0.26 -0.3
313,555 + GFF279 0.26 -0.8
313,555 + GFF279 0.26 +0.4
313,789 + GFF279 0.43 -0.7
313,789 + GFF279 0.43 -0.9
313,789 + GFF279 0.43 -0.9
313,789 + GFF279 0.43 -1.6
313,790 - GFF279 0.43 -0.3
313,790 - GFF279 0.43 -1.0
313,790 - GFF279 0.43 +1.1
313,854 + GFF279 0.48 -0.2
313,855 + GFF279 0.48 +0.5
313,855 + GFF279 0.48 -0.5
313,856 - GFF279 0.48 -1.3
313,856 - GFF279 0.48 -1.2
313,856 - GFF279 0.48 -0.9
313,856 - GFF279 0.48 -1.1
313,856 - GFF279 0.48 +0.9
314,422 + GFF279 0.89 +0.1
314,422 + GFF279 0.89 +0.1
314,423 - GFF279 0.89 -0.6
314,625 - -1.4
314,635 + -1.1
314,659 - -0.9
314,668 + -1.0
314,684 + -0.8
314,685 - -0.3
314,685 - -0.5
314,685 - -0.4
314,685 - +0.3
314,685 - -0.9
314,698 + +0.2
314,699 - -0.7
314,699 - -0.2
314,702 + +0.2
314,702 + -2.0
314,702 + +0.7
314,702 + -0.2
314,702 + -0.8
314,703 - -1.4
314,703 - +1.2
314,703 - -0.3
314,703 - +0.2
314,877 + GFF280 0.16 +0.3
314,877 + GFF280 0.16 -0.5
314,877 + GFF280 0.16 +1.6
314,878 - GFF280 0.16 +0.7
314,988 + GFF280 0.28 -1.1
315,054 + GFF280 0.34 -0.3
315,054 + GFF280 0.34 -0.6
315,054 + GFF280 0.34 -0.8
315,055 - GFF280 0.35 -0.9
315,055 - GFF280 0.35 -0.9
315,055 - GFF280 0.35 +0.8
315,055 - GFF280 0.35 -0.3
315,201 + GFF280 0.50 +0.2
315,201 + GFF280 0.50 -2.2
315,202 - GFF280 0.50 -0.2
315,202 - GFF280 0.50 -0.3
315,202 - GFF280 0.50 -0.2
315,202 - GFF280 0.50 -0.0
315,279 + GFF280 0.58 +0.9
315,279 + GFF280 0.58 -0.1
315,280 - GFF280 0.58 -0.4
315,280 - GFF280 0.58 -0.9
315,280 - GFF280 0.58 -0.7

Or see this region's nucleotide sequence