Strain Fitness in Variovorax sp. SCN45 around GFF2686

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
110,666	-		GFF2685	0.74	-1.1
110,858	-		GFF2685	0.82	+0.7
111,314	+				-1.4
111,314	+				-0.4
111,314	+				-0.6
111,389	+				-1.3
111,389	+				+1.7
111,389	+				+0.7
111,389	+				-0.4
111,389	+				-0.0
111,389	+				-0.2
111,390	-				+0.5
111,390	-				+0.4
111,390	-				+0.2
111,390	-				+0.5
111,390	-				-0.4
111,390	-				+0.4
111,390	-				-0.0
111,390	-				+0.4
111,390	-				-0.6
111,414	+				-0.1
111,432	-				-0.7
111,432	-				-0.2
111,432	-				+1.1
111,432	-				-1.7
111,485	+				-1.3
111,485	+				-0.4
111,485	+				+0.1
111,485	+				+0.6
111,485	+				-1.3
111,486	-				-0.7
111,486	-				-0.1
111,486	-				-0.4
111,491	+				-1.1
111,491	+				+1.0
111,491	+				+0.1
111,491	+				+1.7
111,491	+				-0.3
111,491	+				-0.7
111,492	-				+0.2
111,492	-				+0.8
111,492	-				-0.3
111,492	-				-0.8
111,569	+				+1.1
111,632	+				+0.2
111,632	+				-1.1
111,632	+				-0.4
111,632	+				+0.7
111,632	+				-0.4
111,632	+				+0.2
111,633	-				-0.7
111,633	-				-0.3
111,633	-				-0.5
111,710	+				-0.5
111,710	+				+2.5
111,711	-				+0.3
111,765	-				+0.2
111,797	+				-0.4
111,836	+		GFF2686	0.11	-0.1
111,837	-		GFF2686	0.11	+0.1
111,920	+		GFF2686	0.13	-0.7
111,920	+		GFF2686	0.13	-0.4
111,921	-		GFF2686	0.13	-0.9
111,921	-		GFF2686	0.13	+0.6
111,921	-		GFF2686	0.13	-0.1
112,058	+		GFF2686	0.17	-2.2
112,058	+		GFF2686	0.17	-0.3
112,322	+		GFF2686	0.25	+0.5
112,350	-		GFF2686	0.26	-0.3
112,451	+		GFF2686	0.28	+0.2
112,451	+		GFF2686	0.28	-0.4
112,451	+		GFF2686	0.28	-0.5
112,451	+		GFF2686	0.28	-0.3
112,452	-		GFF2686	0.28	+0.1
112,709	+		GFF2686	0.36	-0.6
112,709	+		GFF2686	0.36	-0.1
112,709	+		GFF2686	0.36	+0.4
112,709	+		GFF2686	0.36	-1.1
112,710	-		GFF2686	0.36	-0.9
112,710	-		GFF2686	0.36	+0.4
112,710	-		GFF2686	0.36	-0.5
112,775	+		GFF2686	0.38	-0.9
112,775	+		GFF2686	0.38	+0.7
112,775	+		GFF2686	0.38	+1.4
112,776	-		GFF2686	0.38	+1.4
112,776	-		GFF2686	0.38	-0.4
112,776	-		GFF2686	0.38	-0.3
112,791	-		GFF2686	0.38	-2.4
112,791	-		GFF2686	0.38	+0.3
112,802	+		GFF2686	0.38	-0.2
112,802	+		GFF2686	0.38	+0.9
112,802	+		GFF2686	0.38	+0.6
112,802	+		GFF2686	0.38	+0.1
112,802	+		GFF2686	0.38	-0.7
112,802	+		GFF2686	0.38	-1.1
112,802	+		GFF2686	0.38	+0.3
112,802	+		GFF2686	0.38	-0.9
112,802	+		GFF2686	0.38	+0.3
112,802	+		GFF2686	0.38	+0.7
112,802	+		GFF2686	0.38	+0.0
112,802	+		GFF2686	0.38	+0.7
112,802	+		GFF2686	0.38	-0.9
112,802	+		GFF2686	0.38	+0.0
112,802	+		GFF2686	0.38	-0.5
112,802	+		GFF2686	0.38	-0.9
112,802	+		GFF2686	0.38	-0.4
112,803	-		GFF2686	0.38	-0.6
112,803	-		GFF2686	0.38	+1.7
112,803	-		GFF2686	0.38	+0.3
112,803	-		GFF2686	0.38	-2.0
112,803	-		GFF2686	0.38	-0.3
112,803	-		GFF2686	0.38	-0.6
112,803	-		GFF2686	0.38	+0.8
112,803	-		GFF2686	0.38	+0.1
112,803	-		GFF2686	0.38	+0.7
112,803	-		GFF2686	0.38	-0.3
112,803	-		GFF2686	0.38	+0.1
112,803	-		GFF2686	0.38	-0.2
112,803	-		GFF2686	0.38	+0.3
112,805	+		GFF2686	0.38	-1.9
112,806	-		GFF2686	0.38	+0.4
112,806	-		GFF2686	0.38	-0.6
112,806	-		GFF2686	0.38	+0.8
112,808	+		GFF2686	0.39	+0.7
112,809	-		GFF2686	0.39	-0.4
112,932	-		GFF2686	0.42	-0.5
112,932	-		GFF2686	0.42	+2.0
112,932	-		GFF2686	0.42	-0.4
112,932	-		GFF2686	0.42	+0.8
113,033	+		GFF2686	0.45	+0.9
113,108	+		GFF2686	0.47	-0.5
113,108	+		GFF2686	0.47	-0.3
113,109	-		GFF2686	0.47	-0.4
113,109	-		GFF2686	0.47	-1.8
113,183	+		GFF2686	0.49	+0.9
113,184	-		GFF2686	0.49	+1.4
113,250	-		GFF2686	0.51	-1.1
113,250	-		GFF2686	0.51	-1.2
113,495	+		GFF2686	0.58	-1.6
113,495	+		GFF2686	0.58	-1.3
113,495	+		GFF2686	0.58	-1.3
113,495	+		GFF2686	0.58	+0.1
113,496	-		GFF2686	0.58	-0.1
113,496	-		GFF2686	0.58	-0.2
113,496	-		GFF2686	0.58	+1.7
113,496	-		GFF2686	0.58	+0.5
113,496	-		GFF2686	0.58	+0.5
113,531	+		GFF2686	0.59	+0.2
113,532	-		GFF2686	0.59	-0.3
113,723	+		GFF2686	0.64	-0.1
113,882	+		GFF2686	0.69	+0.1
113,883	-		GFF2686	0.69	+0.7
113,883	-		GFF2686	0.69	-1.1
113,883	-		GFF2686	0.69	-1.2
113,883	-		GFF2686	0.69	-1.3
113,909	+		GFF2686	0.70	+0.3
113,910	-		GFF2686	0.70	-0.2
113,984	+		GFF2686	0.72	-0.2
113,984	+		GFF2686	0.72	-0.2
113,984	+		GFF2686	0.72	+0.2
113,985	-		GFF2686	0.72	+0.1
113,985	-		GFF2686	0.72	+0.2
113,985	-		GFF2686	0.72	+0.6
114,032	+		GFF2686	0.73	+0.7
114,032	+		GFF2686	0.73	+0.6
114,033	-		GFF2686	0.73	-0.7
114,137	+		GFF2686	0.76	+0.2
114,138	-		GFF2686	0.76	-0.1
114,272	+		GFF2686	0.80	+0.1
114,273	-		GFF2686	0.80	+1.7
114,273	-		GFF2686	0.80	+0.1
114,539	+		GFF2686	0.88	-0.2
114,540	-		GFF2686	0.88	+0.3
114,540	-		GFF2686	0.88	+0.1
114,677	+				-0.2
114,788	+				-0.6
114,789	-				-0.7
114,842	+				-1.6
114,843	-				+0.9
114,987	+				-2.6
114,988	-				-1.3
115,233	+				+0.4
115,437	+		GFF2687	0.14	-0.7
115,437	+		GFF2687	0.14	-0.8
115,437	+		GFF2687	0.14	+0.2
115,437	+		GFF2687	0.14	+0.2
115,437	+		GFF2687	0.14	+0.1
115,437	+		GFF2687	0.14	-0.4
115,438	-		GFF2687	0.15	+0.3
115,438	-		GFF2687	0.15	-0.1
115,438	-		GFF2687	0.15	-0.3
115,446	+		GFF2687	0.15	+0.7
115,447	-		GFF2687	0.15	-0.9
115,585	-		GFF2687	0.20	-0.6
115,785	+		GFF2687	0.27	-0.0
115,786	-		GFF2687	0.27	-0.1
115,869	+		GFF2687	0.30	+0.1
115,870	-		GFF2687	0.30	+0.9
115,870	-		GFF2687	0.30	-0.1
115,870	-		GFF2687	0.30	-1.2
115,870	-		GFF2687	0.30	-0.0
115,950	+		GFF2687	0.33	-0.1
115,950	+		GFF2687	0.33	+0.1
115,962	+		GFF2687	0.34	+2.9
115,962	+		GFF2687	0.34	+0.6
115,963	-		GFF2687	0.34	+0.3