Strain Fitness in Variovorax sp. SCN45 around GFF2594
Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL |
---|---|---|---|---|---|
remove | |||||
60 | + | +0.8 | |||
76 | + | -0.4 | |||
250 | - | GFF2594 | 0.24 | +0.9 | |
343 | - | GFF2594 | 0.33 | -0.6 | |
603 | + | GFF2594 | 0.58 | +1.2 | |
603 | + | GFF2594 | 0.58 | -1.7 | |
603 | + | GFF2594 | 0.58 | -0.9 | |
603 | + | GFF2594 | 0.58 | -0.6 | |
604 | - | GFF2594 | 0.58 | +1.4 | |
613 | + | GFF2594 | 0.59 | +0.6 | |
613 | + | GFF2594 | 0.59 | -0.7 | |
613 | + | GFF2594 | 0.59 | -1.0 | |
613 | + | GFF2594 | 0.59 | -0.1 | |
613 | + | GFF2594 | 0.59 | +0.7 | |
613 | + | GFF2594 | 0.59 | -0.2 | |
613 | + | GFF2594 | 0.59 | -1.6 | |
613 | + | GFF2594 | 0.59 | +0.9 | |
613 | + | GFF2594 | 0.59 | -0.1 | |
613 | + | GFF2594 | 0.59 | +1.3 | |
614 | - | GFF2594 | 0.59 | -0.3 | |
614 | - | GFF2594 | 0.59 | +0.9 | |
614 | - | GFF2594 | 0.59 | +2.7 | |
614 | - | GFF2594 | 0.59 | -0.4 | |
614 | - | GFF2594 | 0.59 | +0.7 | |
614 | - | GFF2594 | 0.59 | +0.2 | |
614 | - | GFF2594 | 0.59 | -0.1 | |
614 | - | GFF2594 | 0.59 | +0.1 | |
614 | - | GFF2594 | 0.59 | -0.5 | |
614 | - | GFF2594 | 0.59 | +0.1 | |
614 | - | GFF2594 | 0.59 | -0.1 | |
614 | - | GFF2594 | 0.59 | +0.5 | |
858 | + | GFF2594 | 0.83 | +0.4 | |
858 | + | GFF2594 | 0.83 | -0.3 | |
859 | - | GFF2594 | 0.83 | +1.3 | |
1,048 | + | -0.5 | |||
1,048 | + | -0.8 | |||
1,048 | + | +0.1 | |||
1,075 | + | -0.3 | |||
1,075 | + | -0.3 | |||
1,088 | - | -0.7 | |||
1,088 | - | +1.3 | |||
1,139 | - | +0.2 | |||
1,139 | - | -0.4 | |||
1,144 | + | +0.7 | |||
1,145 | - | -0.9 | |||
1,411 | + | GFF2595 | 0.32 | -0.6 | |
1,411 | + | GFF2595 | 0.32 | -0.0 | |
1,411 | + | GFF2595 | 0.32 | -0.8 | |
1,411 | + | GFF2595 | 0.32 | -0.4 | |
1,411 | + | GFF2595 | 0.32 | -0.7 | |
1,411 | + | GFF2595 | 0.32 | -0.2 | |
1,411 | + | GFF2595 | 0.32 | +0.2 | |
1,412 | - | GFF2595 | 0.32 | -2.2 | |
1,412 | - | GFF2595 | 0.32 | -0.0 | |
1,412 | - | GFF2595 | 0.32 | +0.1 | |
1,412 | - | GFF2595 | 0.32 | -0.0 | |
1,588 | + | GFF2595 | 0.55 | -0.3 | |
1,588 | + | GFF2595 | 0.55 | -0.2 | |
1,805 | - | GFF2595 | 0.83 | -0.2 |
Or see this region's nucleotide sequence