Strain Fitness in Variovorax sp. SCN45 around GFF2504

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2502 and GFF2503 are separated by 11 nucleotidesGFF2503 and GFF2504 overlap by 4 nucleotidesGFF2504 and GFF2505 are separated by 30 nucleotides GFF2502 - O-antigen acetylase, at 562,980 to 564,953 GFF2502 GFF2503 - DNA gyrase inhibitor YacG, at 564,965 to 565,174 GFF2503 GFF2504 - Cell division protein ZapD, at 565,171 to 565,926 GFF2504 GFF2505 - hypothetical protein, at 565,957 to 566,991 GFF2505 Position (kb) 565 566Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 564.196 kb on - strand, within GFF2502at 564.255 kb on + strand, within GFF2502at 564.255 kb on + strand, within GFF2502at 564.255 kb on + strand, within GFF2502at 564.255 kb on + strand, within GFF2502at 564.256 kb on - strand, within GFF2502at 564.256 kb on - strand, within GFF2502at 564.256 kb on - strand, within GFF2502at 564.256 kb on - strand, within GFF2502at 564.312 kb on + strand, within GFF2502at 564.312 kb on + strand, within GFF2502at 564.313 kb on - strand, within GFF2502at 564.313 kb on - strand, within GFF2502at 564.465 kb on + strand, within GFF2502at 564.465 kb on + strand, within GFF2502at 564.465 kb on + strand, within GFF2502at 564.465 kb on + strand, within GFF2502at 564.465 kb on + strand, within GFF2502at 564.466 kb on - strand, within GFF2502at 564.466 kb on - strand, within GFF2502at 564.466 kb on - strand, within GFF2502at 564.495 kb on + strand, within GFF2502at 564.495 kb on + strand, within GFF2502at 564.495 kb on + strand, within GFF2502at 564.495 kb on + strand, within GFF2502at 564.495 kb on + strand, within GFF2502at 564.496 kb on - strand, within GFF2502at 564.496 kb on - strand, within GFF2502at 564.496 kb on - strand, within GFF2502at 564.496 kb on - strand, within GFF2502at 564.496 kb on - strand, within GFF2502at 564.568 kb on + strand, within GFF2502at 564.609 kb on + strand, within GFF2502at 564.609 kb on + strand, within GFF2502at 564.609 kb on + strand, within GFF2502at 564.609 kb on + strand, within GFF2502at 564.609 kb on + strand, within GFF2502at 564.609 kb on + strand, within GFF2502at 564.609 kb on + strand, within GFF2502at 564.609 kb on + strand, within GFF2502at 564.610 kb on - strand, within GFF2502at 564.610 kb on - strand, within GFF2502at 564.610 kb on - strand, within GFF2502at 564.610 kb on - strand, within GFF2502at 564.610 kb on - strand, within GFF2502at 564.610 kb on - strand, within GFF2502at 564.610 kb on - strand, within GFF2502at 564.610 kb on - strand, within GFF2502at 564.858 kb on + strandat 564.858 kb on + strandat 564.858 kb on + strandat 564.859 kb on - strandat 564.888 kb on + strandat 564.888 kb on + strandat 564.888 kb on + strandat 564.888 kb on + strandat 564.889 kb on + strandat 564.889 kb on - strandat 564.889 kb on - strandat 564.889 kb on - strandat 564.909 kb on + strandat 564.909 kb on + strandat 564.909 kb on + strandat 564.909 kb on + strandat 564.909 kb on + strandat 564.910 kb on - strandat 564.910 kb on - strandat 564.910 kb on - strandat 564.910 kb on - strandat 564.951 kb on + strandat 564.951 kb on + strandat 564.951 kb on + strandat 564.951 kb on + strandat 564.952 kb on - strandat 564.963 kb on - strandat 564.963 kb on - strandat 564.963 kb on - strandat 564.963 kb on - strandat 564.963 kb on - strandat 564.963 kb on - strandat 564.966 kb on + strandat 564.967 kb on - strandat 565.090 kb on - strand, within GFF2503at 565.090 kb on - strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.107 kb on + strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.108 kb on - strand, within GFF2503at 565.388 kb on + strand, within GFF2504at 565.388 kb on + strand, within GFF2504at 565.389 kb on - strand, within GFF2504at 565.389 kb on - strand, within GFF2504at 565.427 kb on + strand, within GFF2504at 565.427 kb on + strand, within GFF2504at 565.427 kb on + strand, within GFF2504at 565.427 kb on + strand, within GFF2504at 565.428 kb on - strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.514 kb on + strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.515 kb on - strand, within GFF2504at 565.517 kb on + strand, within GFF2504at 565.518 kb on - strand, within GFF2504at 565.518 kb on - strand, within GFF2504at 565.518 kb on - strand, within GFF2504at 565.706 kb on + strand, within GFF2504at 565.707 kb on - strand, within GFF2504at 565.747 kb on + strand, within GFF2504at 565.747 kb on + strand, within GFF2504at 565.747 kb on + strand, within GFF2504at 565.748 kb on - strand, within GFF2504at 565.748 kb on - strand, within GFF2504at 565.748 kb on - strand, within GFF2504at 565.811 kb on + strand, within GFF2504at 565.812 kb on - strand, within GFF2504at 565.812 kb on - strand, within GFF2504at 565.883 kb on + strandat 565.883 kb on + strandat 565.883 kb on + strandat 565.883 kb on + strandat 565.883 kb on + strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.884 kb on - strandat 565.910 kb on + strandat 565.910 kb on + strandat 565.910 kb on + strandat 565.911 kb on - strandat 565.916 kb on + strandat 565.917 kb on - strandat 565.917 kb on - strandat 565.931 kb on - strandat 566.010 kb on + strandat 566.010 kb on + strandat 566.010 kb on + strandat 566.011 kb on - strandat 566.031 kb on - strandat 566.031 kb on - strandat 566.124 kb on + strand, within GFF2505at 566.125 kb on - strand, within GFF2505at 566.177 kb on + strand, within GFF2505at 566.177 kb on + strand, within GFF2505at 566.177 kb on + strand, within GFF2505at 566.219 kb on + strand, within GFF2505at 566.438 kb on + strand, within GFF2505at 566.438 kb on + strand, within GFF2505at 566.439 kb on - strand, within GFF2505at 566.439 kb on - strand, within GFF2505at 566.708 kb on + strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.709 kb on - strand, within GFF2505at 566.742 kb on - strand, within GFF2505at 566.888 kb on + strandat 566.888 kb on + strandat 566.893 kb on + strandat 566.893 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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564,196 - GFF2502 0.62 -0.8
564,255 + GFF2502 0.65 +0.5
564,255 + GFF2502 0.65 -0.8
564,255 + GFF2502 0.65 -0.7
564,255 + GFF2502 0.65 -0.5
564,256 - GFF2502 0.65 -1.2
564,256 - GFF2502 0.65 -0.8
564,256 - GFF2502 0.65 -0.3
564,256 - GFF2502 0.65 -0.9
564,312 + GFF2502 0.67 +0.5
564,312 + GFF2502 0.67 -0.5
564,313 - GFF2502 0.68 -0.4
564,313 - GFF2502 0.68 -1.2
564,465 + GFF2502 0.75 -0.9
564,465 + GFF2502 0.75 +0.8
564,465 + GFF2502 0.75 -0.3
564,465 + GFF2502 0.75 -2.0
564,465 + GFF2502 0.75 -0.2
564,466 - GFF2502 0.75 +1.0
564,466 - GFF2502 0.75 -0.8
564,466 - GFF2502 0.75 +0.2
564,495 + GFF2502 0.77 -1.4
564,495 + GFF2502 0.77 -1.2
564,495 + GFF2502 0.77 -0.2
564,495 + GFF2502 0.77 -0.2
564,495 + GFF2502 0.77 +0.6
564,496 - GFF2502 0.77 +0.2
564,496 - GFF2502 0.77 -0.2
564,496 - GFF2502 0.77 -0.4
564,496 - GFF2502 0.77 +0.0
564,496 - GFF2502 0.77 +0.3
564,568 + GFF2502 0.80 +0.1
564,609 + GFF2502 0.83 -1.0
564,609 + GFF2502 0.83 -1.0
564,609 + GFF2502 0.83 -1.4
564,609 + GFF2502 0.83 -0.4
564,609 + GFF2502 0.83 -1.0
564,609 + GFF2502 0.83 +0.8
564,609 + GFF2502 0.83 +0.8
564,609 + GFF2502 0.83 +1.8
564,610 - GFF2502 0.83 +0.0
564,610 - GFF2502 0.83 -1.2
564,610 - GFF2502 0.83 -0.7
564,610 - GFF2502 0.83 +0.6
564,610 - GFF2502 0.83 +1.4
564,610 - GFF2502 0.83 +0.2
564,610 - GFF2502 0.83 -0.7
564,610 - GFF2502 0.83 +0.1
564,858 + -0.1
564,858 + +1.4
564,858 + -0.2
564,859 - +0.3
564,888 + +0.2
564,888 + +0.2
564,888 + -0.1
564,888 + -0.4
564,889 + -0.0
564,889 - +0.6
564,889 - -0.9
564,889 - -1.0
564,909 + +0.8
564,909 + +0.1
564,909 + +0.5
564,909 + +0.0
564,909 + -0.4
564,910 - -0.4
564,910 - +0.0
564,910 - -0.2
564,910 - -0.9
564,951 + +1.0
564,951 + +0.6
564,951 + -0.5
564,951 + +0.1
564,952 - -0.3
564,963 - -0.1
564,963 - -0.6
564,963 - -0.7
564,963 - -0.3
564,963 - -0.2
564,963 - -0.8
564,966 + +0.4
564,967 - -0.3
565,090 - GFF2503 0.60 -0.5
565,090 - GFF2503 0.60 -0.3
565,107 + GFF2503 0.68 -0.1
565,107 + GFF2503 0.68 -0.9
565,107 + GFF2503 0.68 -0.4
565,107 + GFF2503 0.68 +0.6
565,107 + GFF2503 0.68 -0.2
565,107 + GFF2503 0.68 +0.1
565,107 + GFF2503 0.68 -0.8
565,107 + GFF2503 0.68 +0.4
565,107 + GFF2503 0.68 +0.2
565,108 - GFF2503 0.68 +0.9
565,108 - GFF2503 0.68 -0.8
565,108 - GFF2503 0.68 +1.4
565,108 - GFF2503 0.68 -0.4
565,108 - GFF2503 0.68 +1.8
565,108 - GFF2503 0.68 -0.4
565,108 - GFF2503 0.68 +0.4
565,108 - GFF2503 0.68 +0.1
565,108 - GFF2503 0.68 +0.2
565,388 + GFF2504 0.29 +0.5
565,388 + GFF2504 0.29 -2.2
565,389 - GFF2504 0.29 -0.5
565,389 - GFF2504 0.29 -0.4
565,427 + GFF2504 0.34 +0.6
565,427 + GFF2504 0.34 +0.7
565,427 + GFF2504 0.34 -0.3
565,427 + GFF2504 0.34 +0.8
565,428 - GFF2504 0.34 -1.5
565,514 + GFF2504 0.45 +0.2
565,514 + GFF2504 0.45 +0.5
565,514 + GFF2504 0.45 +1.8
565,514 + GFF2504 0.45 -0.5
565,514 + GFF2504 0.45 -1.3
565,514 + GFF2504 0.45 +0.3
565,515 - GFF2504 0.46 -0.0
565,515 - GFF2504 0.46 +1.4
565,515 - GFF2504 0.46 +1.0
565,515 - GFF2504 0.46 -0.4
565,515 - GFF2504 0.46 +1.1
565,515 - GFF2504 0.46 -0.2
565,515 - GFF2504 0.46 +0.5
565,515 - GFF2504 0.46 -1.2
565,515 - GFF2504 0.46 +0.7
565,517 + GFF2504 0.46 -0.1
565,518 - GFF2504 0.46 +0.2
565,518 - GFF2504 0.46 -1.2
565,518 - GFF2504 0.46 +0.7
565,706 + GFF2504 0.71 -0.5
565,707 - GFF2504 0.71 -0.9
565,747 + GFF2504 0.76 -0.8
565,747 + GFF2504 0.76 -0.8
565,747 + GFF2504 0.76 +0.2
565,748 - GFF2504 0.76 -0.6
565,748 - GFF2504 0.76 -0.0
565,748 - GFF2504 0.76 -0.8
565,811 + GFF2504 0.85 -1.6
565,812 - GFF2504 0.85 -0.6
565,812 - GFF2504 0.85 +2.6
565,883 + +1.0
565,883 + +0.1
565,883 + -0.1
565,883 + +0.2
565,883 + -0.8
565,884 - +0.6
565,884 - +0.1
565,884 - -0.1
565,884 - -0.4
565,884 - +0.2
565,884 - -0.3
565,884 - +0.0
565,884 - +0.2
565,884 - +0.5
565,884 - +1.0
565,910 + -1.1
565,910 + +0.0
565,910 + -3.1
565,911 - -0.3
565,916 + +0.1
565,917 - +0.5
565,917 - +2.4
565,931 - -0.5
566,010 + +0.3
566,010 + -2.6
566,010 + -0.3
566,011 - -1.0
566,031 - -1.2
566,031 - -0.4
566,124 + GFF2505 0.16 -0.4
566,125 - GFF2505 0.16 +0.4
566,177 + GFF2505 0.21 +0.2
566,177 + GFF2505 0.21 +0.5
566,177 + GFF2505 0.21 +0.2
566,219 + GFF2505 0.25 +1.6
566,438 + GFF2505 0.46 -1.1
566,438 + GFF2505 0.46 +2.8
566,439 - GFF2505 0.47 +0.9
566,439 - GFF2505 0.47 +0.0
566,708 + GFF2505 0.73 +0.8
566,709 - GFF2505 0.73 -0.7
566,709 - GFF2505 0.73 -0.1
566,709 - GFF2505 0.73 -0.0
566,709 - GFF2505 0.73 +0.8
566,709 - GFF2505 0.73 +0.1
566,709 - GFF2505 0.73 -2.4
566,709 - GFF2505 0.73 -0.5
566,709 - GFF2505 0.73 -1.5
566,709 - GFF2505 0.73 +3.4
566,709 - GFF2505 0.73 +0.5
566,742 - GFF2505 0.76 +0.2
566,888 + +0.6
566,888 + -0.8
566,893 + +0.6
566,893 + -0.3

Or see this region's nucleotide sequence