Strain Fitness in Variovorax sp. SCN45 around GFF2181

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
233,529	+				+0.6
233,556	+				+0.4
233,556	+				+0.1
233,557	-				+0.5
233,557	-				+0.1
233,557	-				+0.3
233,557	-				-1.8
233,666	-		GFF2179	0.10	-1.0
233,695	+		GFF2179	0.17	-0.7
233,695	+		GFF2179	0.17	-0.3
234,004	+				-1.6
234,004	+				-1.1
234,004	+				-0.1
234,004	+				+0.1
234,005	-				-0.0
234,005	-				+0.2
234,005	-				-0.5
234,005	-				+0.3
234,123	+		GFF2180	0.25	-1.0
234,123	+		GFF2180	0.25	-1.9
234,123	+		GFF2180	0.25	+1.7
234,124	-		GFF2180	0.25	+0.3
234,124	-		GFF2180	0.25	-0.3
234,124	-		GFF2180	0.25	-0.2
234,313	+		GFF2180	0.80	-0.2
234,313	+		GFF2180	0.80	-0.3
234,313	+		GFF2180	0.80	-0.9
234,313	+		GFF2180	0.80	+0.3
234,313	+		GFF2180	0.80	-0.1
234,314	-		GFF2180	0.80	+1.0
234,314	-		GFF2180	0.80	-1.6
234,314	-		GFF2180	0.80	-0.5
234,314	-		GFF2180	0.80	-1.1
234,314	-		GFF2180	0.80	+0.3
234,339	+		GFF2180	0.87	-1.5
234,339	+		GFF2180	0.87	-0.6
234,340	-		GFF2180	0.87	+0.3
234,340	-		GFF2180	0.87	-0.2
234,369	+				+0.2
234,369	+				-0.3
234,369	+				-0.3
234,369	+				+0.1
234,369	+				-1.0
234,369	+				+0.5
234,369	+				-0.4
234,370	-				-1.3
234,370	-				-0.2
234,370	-				-0.5
234,404	-				-0.3
234,535	+		GFF2181	0.53	+0.1
234,535	+		GFF2181	0.53	-0.7
234,535	+		GFF2181	0.53	-0.8
234,535	+		GFF2181	0.53	-1.1
234,535	+		GFF2181	0.53	-0.7
234,535	+		GFF2181	0.53	+0.2
234,536	-		GFF2181	0.54	+0.0
234,536	-		GFF2181	0.54	-1.4
234,536	-		GFF2181	0.54	-0.5
234,536	-		GFF2181	0.54	-1.3
234,536	-		GFF2181	0.54	-0.8
234,550	+		GFF2181	0.59	-0.1
234,550	+		GFF2181	0.59	+1.3
234,551	-		GFF2181	0.60	-1.5
234,551	-		GFF2181	0.60	+0.4
234,551	-		GFF2181	0.60	-0.1
234,551	-		GFF2181	0.60	-0.1
234,612	+		GFF2181	0.84	+0.9
234,613	-		GFF2181	0.85	-1.1
234,613	-		GFF2181	0.85	-0.9
234,613	-		GFF2181	0.85	-0.4
234,633	+				-1.8
234,633	+				-0.5
234,633	+				+0.4
234,633	+				-1.3
234,634	-				+0.8
234,634	-				-0.6
234,634	-				-0.9
234,634	-				-0.4
234,634	-				+0.4
234,634	-				-0.6
234,636	-				-0.4
234,636	-				-1.0
234,636	-				-0.5
234,864	+				+0.7
234,865	-				+0.0
234,869	+				-0.8
234,869	+				-0.8
234,870	-				+0.3
234,870	-				+0.4
234,910	+				-1.4
234,910	+				-0.5
234,911	-				-0.5
234,911	-				+0.9
234,911	-				+0.1
234,911	-				-0.8
234,930	+				+0.3
234,930	+				-0.4
234,930	+				-0.1
234,931	-				-2.0
234,931	-				+1.6
234,931	-				+0.2
234,931	-				-1.5
234,931	-				-0.0
234,931	-				+0.1
234,976	+				-0.0
234,982	-				-0.3
235,002	+				+0.9
235,073	+				-0.6
235,073	+				-1.0
235,073	+				-0.4
235,073	+				-3.0
235,073	+				-0.5
235,073	+				+0.6
235,073	+				-0.2
235,073	+				-0.2
235,073	+				+0.5
235,073	+				-0.3
235,074	-				-1.6
235,329	+				-0.5
235,329	+				+0.8
235,329	+				-0.0
235,329	+				-0.6
235,329	+				-0.2
235,330	-				-0.1
235,330	-				-2.4
235,330	-				-0.6
235,330	-				-1.1
235,330	-				-1.5
235,340	+				+1.0
235,340	+				-1.6
235,340	+				-1.0
235,340	+				-0.7
235,340	+				-0.7
235,356	+				-0.6
235,356	+				-1.3
235,356	+				-0.6
235,356	+				-0.7
235,357	-				-1.1
235,357	-				-2.5
235,357	-				+0.3
235,368	+				-0.4
235,368	+				+0.6
235,368	+				-0.6
235,369	-				-1.8
235,369	-				-0.9
235,398	+				-0.8
235,399	-				+0.7
235,399	-				-0.4
235,449	+				+0.9
235,449	+				-0.4
235,449	+				-0.1
235,449	+				+1.1
235,450	-				-0.1
235,459	+				-1.1
235,459	+				-2.3
235,459	+				-0.5
235,460	-				+0.9
235,460	-				-1.8
235,460	-				+0.3
235,461	+				-1.0
235,461	+				-1.1
235,461	+				-0.4
235,461	+				-1.3
235,461	+				-0.1
235,461	+				-0.5
235,461	+				-0.7
235,462	-				-1.3
235,462	-				-0.7
235,462	-				-0.2
235,462	-				-2.2
235,462	-				-0.7
235,462	-				-1.4
235,462	-				-0.8
235,462	-				-1.4
235,528	-				-0.9
235,528	-				-0.7
235,528	-				-0.2
235,572	+				-1.3
235,572	+				-0.6
235,572	+				-1.8
235,572	+				-1.1
235,573	-				-0.4
235,573	-				-0.7
235,573	-				-1.4
235,573	-				+1.2
235,573	-				+0.5
235,573	-				+0.6
235,581	+				-0.7
235,581	+				-0.5
235,581	+				-0.7
235,581	+				-0.3
235,581	+				-0.9
235,581	+				+0.3
235,581	+				+0.3
235,581	+				-0.6
235,581	+				-0.3
235,582	-				-0.8
235,582	-				-1.1
235,582	-				-1.7
235,582	-				-0.3
235,582	-				-1.1
235,582	-				+0.3
235,582	-				-1.5
235,582	-				-0.5
235,582	-				-0.7
235,582	-				-1.1
235,582	-				-1.6
235,582	-				-0.2