Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2106 and GFF2107 are separated by 32 nucleotides GFF2107 and GFF2108 overlap by 4 nucleotides GFF2108 and GFF2109 are separated by 19 nucleotides GFF2109 and GFF2110 are separated by 56 nucleotides
GFF2106 - hypothetical protein, at 156,566 to 157,726
GFF2106
GFF2107 - no description, at 157,759 to 158,112
GFF2107
GFF2108 - hypothetical protein, at 158,109 to 159,125
GFF2108
GFF2109 - FIG00454067: hypothetical protein, at 159,145 to 159,390
GFF2109
GFF2110 - no description, at 159,447 to 160,289
GFF2110
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.148 kb on + strand, within GFF2106 at 157.148 kb on + strand, within GFF2106 at 157.148 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.235 kb on + strand, within GFF2106 at 157.235 kb on + strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.679 kb on + strand at 157.680 kb on - strand at 157.680 kb on - strand at 157.808 kb on + strand, within GFF2107 at 157.808 kb on + strand, within GFF2107 at 157.808 kb on + strand, within GFF2107 at 157.809 kb on - strand, within GFF2107 at 157.847 kb on - strand, within GFF2107 at 158.097 kb on - strand at 158.509 kb on + strand, within GFF2108 at 158.526 kb on - strand, within GFF2108 at 158.720 kb on - strand, within GFF2108 at 158.720 kb on - strand, within GFF2108 at 159.146 kb on + strand at 159.146 kb on + strand at 159.147 kb on - strand at 159.296 kb on + strand, within GFF2109 at 159.296 kb on + strand, within GFF2109 at 159.374 kb on + strand at 159.375 kb on - strand at 159.376 kb on - strand at 159.460 kb on + strand at 159.460 kb on + strand at 159.461 kb on - strand at 159.498 kb on + strand at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.535 kb on + strand, within GFF2110 at 159.536 kb on + strand, within GFF2110 at 159.536 kb on - strand, within GFF2110 at 159.542 kb on - strand, within GFF2110 at 159.607 kb on + strand, within GFF2110 at 159.629 kb on - strand, within GFF2110 at 159.779 kb on - strand, within GFF2110 at 159.779 kb on - strand, within GFF2110 at 159.965 kb on - strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.057 kb on + strand, within GFF2110 at 160.058 kb on - strand, within GFF2110 at 160.058 kb on - strand, within GFF2110 at 160.058 kb on - strand, within GFF2110
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 157,148 + GFF2106 0.50 +1.2 157,148 + GFF2106 0.50 +0.9 157,148 + GFF2106 0.50 +0.1 157,160 + GFF2106 0.51 +1.5 157,160 + GFF2106 0.51 -0.0 157,160 + GFF2106 0.51 +0.2 157,160 + GFF2106 0.51 -0.5 157,160 + GFF2106 0.51 -0.2 157,160 + GFF2106 0.51 -0.6 157,160 + GFF2106 0.51 -0.1 157,160 + GFF2106 0.51 -0.1 157,160 + GFF2106 0.51 -0.4 157,160 + GFF2106 0.51 +0.3 157,161 - GFF2106 0.51 -2.1 157,161 - GFF2106 0.51 +0.0 157,161 - GFF2106 0.51 -1.8 157,161 - GFF2106 0.51 -0.1 157,235 + GFF2106 0.58 -0.0 157,235 + GFF2106 0.58 +0.6 157,236 - GFF2106 0.58 -0.0 157,236 - GFF2106 0.58 -1.4 157,236 - GFF2106 0.58 -1.5 157,236 - GFF2106 0.58 +0.0 157,679 + +0.1 157,680 - -0.2 157,680 - +0.2 157,808 + GFF2107 0.14 -0.9 157,808 + GFF2107 0.14 +0.7 157,808 + GFF2107 0.14 +0.1 157,809 - GFF2107 0.14 -0.3 157,847 - GFF2107 0.25 +0.2 158,097 - -1.3 158,509 + GFF2108 0.39 +2.5 158,526 - GFF2108 0.41 -0.4 158,720 - GFF2108 0.60 +0.5 158,720 - GFF2108 0.60 +1.7 159,146 + -0.6 159,146 + -0.4 159,147 - -0.5 159,296 + GFF2109 0.61 +0.9 159,296 + GFF2109 0.61 -0.4 159,374 + +0.1 159,375 - +0.1 159,376 - -0.1 159,460 + +0.4 159,460 + +0.2 159,461 - +1.9 159,498 + +2.3 159,535 + GFF2110 0.10 -0.7 159,535 + GFF2110 0.10 +0.9 159,535 + GFF2110 0.10 +0.1 159,535 + GFF2110 0.10 -0.7 159,535 + GFF2110 0.10 -0.8 159,536 + GFF2110 0.11 +0.0 159,536 - GFF2110 0.11 -0.3 159,542 - GFF2110 0.11 -1.7 159,607 + GFF2110 0.19 -1.1 159,629 - GFF2110 0.22 -0.7 159,779 - GFF2110 0.39 -0.1 159,779 - GFF2110 0.39 +0.2 159,965 - GFF2110 0.61 -0.6 160,057 + GFF2110 0.72 -0.5 160,057 + GFF2110 0.72 +0.1 160,057 + GFF2110 0.72 -0.3 160,058 - GFF2110 0.72 -0.4 160,058 - GFF2110 0.72 -0.7 160,058 - GFF2110 0.72 +0.3
Or see this region's nucleotide sequence