Strain Fitness in Variovorax sp. SCN45 around GFF1899

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1897 and GFF1898 are separated by 122 nucleotidesGFF1898 and GFF1899 overlap by 6 nucleotidesGFF1899 and GFF1900 are separated by 235 nucleotides GFF1897 - Two-component system sensor histidine kinase/response regulator hybrid, at 571,169 to 573,343 GFF1897 GFF1898 - Phosphoserine phosphatase (EC 3.1.3.3), at 573,466 to 574,119 GFF1898 GFF1899 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 574,114 to 577,656 GFF1899 GFF1900 - Transcriptional regulator, LysR family, at 577,892 to 578,809 GFF1900 Position (kb) 574 575 576 577 578Strain fitness (log2 ratio) -2 -1 0 1 2 3at 573.120 kb on + strand, within GFF1897at 573.120 kb on + strand, within GFF1897at 573.121 kb on - strand, within GFF1897at 573.121 kb on - strand, within GFF1897at 573.121 kb on - strand, within GFF1897at 573.126 kb on + strandat 573.126 kb on + strandat 573.126 kb on + strandat 573.127 kb on - strandat 573.127 kb on - strandat 573.127 kb on - strandat 573.127 kb on - strandat 573.127 kb on - strandat 573.127 kb on - strandat 573.823 kb on + strand, within GFF1898at 573.823 kb on + strand, within GFF1898at 573.823 kb on + strand, within GFF1898at 573.991 kb on + strand, within GFF1898at 573.991 kb on + strand, within GFF1898at 573.991 kb on + strand, within GFF1898at 573.991 kb on + strand, within GFF1898at 573.992 kb on - strand, within GFF1898at 573.992 kb on - strand, within GFF1898at 573.998 kb on - strand, within GFF1898at 574.223 kb on + strandat 574.574 kb on + strand, within GFF1899at 574.593 kb on - strand, within GFF1899at 574.593 kb on - strand, within GFF1899at 574.593 kb on - strand, within GFF1899at 574.605 kb on - strand, within GFF1899at 574.707 kb on - strand, within GFF1899at 574.718 kb on + strand, within GFF1899at 574.719 kb on - strand, within GFF1899at 574.719 kb on - strand, within GFF1899at 574.734 kb on - strand, within GFF1899at 574.734 kb on - strand, within GFF1899at 575.156 kb on + strand, within GFF1899at 575.156 kb on + strand, within GFF1899at 575.156 kb on + strand, within GFF1899at 575.156 kb on + strand, within GFF1899at 575.156 kb on + strand, within GFF1899at 575.156 kb on + strand, within GFF1899at 575.156 kb on + strand, within GFF1899at 575.157 kb on - strand, within GFF1899at 575.157 kb on - strand, within GFF1899at 575.783 kb on + strand, within GFF1899at 575.784 kb on - strand, within GFF1899at 575.784 kb on - strand, within GFF1899at 576.035 kb on + strand, within GFF1899at 576.035 kb on + strand, within GFF1899at 576.036 kb on - strand, within GFF1899at 576.047 kb on + strand, within GFF1899at 576.047 kb on + strand, within GFF1899at 576.047 kb on + strand, within GFF1899at 576.047 kb on + strand, within GFF1899at 576.047 kb on + strand, within GFF1899at 576.048 kb on - strand, within GFF1899at 576.048 kb on - strand, within GFF1899at 576.048 kb on - strand, within GFF1899at 576.048 kb on - strand, within GFF1899at 576.104 kb on + strand, within GFF1899at 576.104 kb on + strand, within GFF1899at 576.104 kb on + strand, within GFF1899at 576.105 kb on - strand, within GFF1899at 576.105 kb on - strand, within GFF1899at 576.105 kb on - strand, within GFF1899at 576.107 kb on + strand, within GFF1899at 576.107 kb on + strand, within GFF1899at 576.107 kb on + strand, within GFF1899at 576.108 kb on - strand, within GFF1899at 576.108 kb on - strand, within GFF1899at 576.108 kb on - strand, within GFF1899at 576.108 kb on - strand, within GFF1899at 576.108 kb on - strand, within GFF1899at 576.221 kb on + strand, within GFF1899at 576.221 kb on + strand, within GFF1899at 576.317 kb on + strand, within GFF1899at 576.317 kb on + strand, within GFF1899at 576.572 kb on + strand, within GFF1899at 576.572 kb on + strand, within GFF1899at 576.573 kb on - strand, within GFF1899at 576.573 kb on - strand, within GFF1899at 576.573 kb on - strand, within GFF1899at 576.573 kb on - strand, within GFF1899at 576.593 kb on + strand, within GFF1899at 576.594 kb on - strand, within GFF1899at 576.854 kb on + strand, within GFF1899at 576.855 kb on - strand, within GFF1899at 576.869 kb on + strand, within GFF1899at 576.869 kb on + strand, within GFF1899at 576.870 kb on - strand, within GFF1899at 576.878 kb on + strand, within GFF1899at 576.879 kb on - strand, within GFF1899at 576.879 kb on - strand, within GFF1899at 576.879 kb on - strand, within GFF1899at 577.112 kb on + strand, within GFF1899at 577.112 kb on + strand, within GFF1899at 577.113 kb on - strand, within GFF1899at 577.113 kb on - strand, within GFF1899at 577.113 kb on - strand, within GFF1899at 577.113 kb on - strand, within GFF1899at 577.113 kb on - strand, within GFF1899at 577.113 kb on - strand, within GFF1899at 577.113 kb on - strand, within GFF1899at 577.310 kb on + strandat 577.310 kb on + strandat 577.310 kb on + strandat 577.477 kb on + strandat 577.589 kb on + strandat 577.589 kb on + strandat 577.590 kb on - strandat 577.613 kb on + strandat 577.613 kb on + strandat 577.613 kb on + strandat 577.613 kb on + strandat 577.613 kb on + strandat 577.614 kb on - strandat 577.614 kb on - strandat 577.614 kb on - strandat 577.614 kb on - strandat 577.614 kb on - strandat 577.614 kb on - strandat 578.181 kb on - strand, within GFF1900at 578.318 kb on + strand, within GFF1900at 578.318 kb on + strand, within GFF1900at 578.318 kb on + strand, within GFF1900at 578.319 kb on - strand, within GFF1900at 578.319 kb on - strand, within GFF1900at 578.319 kb on - strand, within GFF1900at 578.319 kb on - strand, within GFF1900at 578.319 kb on - strand, within GFF1900at 578.319 kb on - strand, within GFF1900

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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573,120 + GFF1897 0.90 -0.3
573,120 + GFF1897 0.90 -0.1
573,121 - GFF1897 0.90 -0.4
573,121 - GFF1897 0.90 +0.9
573,121 - GFF1897 0.90 -0.1
573,126 + +0.1
573,126 + -0.3
573,126 + -0.0
573,127 - -1.2
573,127 - +0.0
573,127 - -1.6
573,127 - -0.0
573,127 - +0.2
573,127 - -0.4
573,823 + GFF1898 0.55 +0.4
573,823 + GFF1898 0.55 +0.8
573,823 + GFF1898 0.55 -1.1
573,991 + GFF1898 0.80 +0.1
573,991 + GFF1898 0.80 -1.1
573,991 + GFF1898 0.80 +0.0
573,991 + GFF1898 0.80 -0.9
573,992 - GFF1898 0.80 -0.6
573,992 - GFF1898 0.80 -1.2
573,998 - GFF1898 0.81 -1.0
574,223 + +0.5
574,574 + GFF1899 0.13 -0.4
574,593 - GFF1899 0.14 +1.1
574,593 - GFF1899 0.14 -0.6
574,593 - GFF1899 0.14 -0.5
574,605 - GFF1899 0.14 -0.3
574,707 - GFF1899 0.17 +0.1
574,718 + GFF1899 0.17 -0.5
574,719 - GFF1899 0.17 -0.9
574,719 - GFF1899 0.17 -1.0
574,734 - GFF1899 0.17 -0.6
574,734 - GFF1899 0.17 +1.1
575,156 + GFF1899 0.29 -0.6
575,156 + GFF1899 0.29 -1.7
575,156 + GFF1899 0.29 +0.8
575,156 + GFF1899 0.29 -0.8
575,156 + GFF1899 0.29 -0.9
575,156 + GFF1899 0.29 -0.4
575,156 + GFF1899 0.29 +0.8
575,157 - GFF1899 0.29 +0.5
575,157 - GFF1899 0.29 -1.4
575,783 + GFF1899 0.47 -2.4
575,784 - GFF1899 0.47 -0.1
575,784 - GFF1899 0.47 -1.0
576,035 + GFF1899 0.54 -1.1
576,035 + GFF1899 0.54 -1.0
576,036 - GFF1899 0.54 -0.7
576,047 + GFF1899 0.55 -0.3
576,047 + GFF1899 0.55 -0.3
576,047 + GFF1899 0.55 -0.5
576,047 + GFF1899 0.55 +0.6
576,047 + GFF1899 0.55 +0.2
576,048 - GFF1899 0.55 -0.8
576,048 - GFF1899 0.55 +0.7
576,048 - GFF1899 0.55 -0.2
576,048 - GFF1899 0.55 -1.1
576,104 + GFF1899 0.56 -0.2
576,104 + GFF1899 0.56 +0.8
576,104 + GFF1899 0.56 -0.8
576,105 - GFF1899 0.56 -0.0
576,105 - GFF1899 0.56 -0.7
576,105 - GFF1899 0.56 -0.7
576,107 + GFF1899 0.56 -0.6
576,107 + GFF1899 0.56 -0.7
576,107 + GFF1899 0.56 +2.0
576,108 - GFF1899 0.56 +0.8
576,108 - GFF1899 0.56 -0.3
576,108 - GFF1899 0.56 -0.1
576,108 - GFF1899 0.56 +0.1
576,108 - GFF1899 0.56 -0.5
576,221 + GFF1899 0.59 +0.8
576,221 + GFF1899 0.59 -1.2
576,317 + GFF1899 0.62 -0.8
576,317 + GFF1899 0.62 -0.4
576,572 + GFF1899 0.69 +1.8
576,572 + GFF1899 0.69 +1.0
576,573 - GFF1899 0.69 -0.7
576,573 - GFF1899 0.69 -0.4
576,573 - GFF1899 0.69 -0.8
576,573 - GFF1899 0.69 -1.2
576,593 + GFF1899 0.70 -1.6
576,594 - GFF1899 0.70 +0.3
576,854 + GFF1899 0.77 -0.8
576,855 - GFF1899 0.77 -0.8
576,869 + GFF1899 0.78 -1.2
576,869 + GFF1899 0.78 +0.7
576,870 - GFF1899 0.78 -0.6
576,878 + GFF1899 0.78 -0.5
576,879 - GFF1899 0.78 -0.8
576,879 - GFF1899 0.78 -0.8
576,879 - GFF1899 0.78 +0.7
577,112 + GFF1899 0.85 -0.2
577,112 + GFF1899 0.85 +0.4
577,113 - GFF1899 0.85 -0.0
577,113 - GFF1899 0.85 +1.4
577,113 - GFF1899 0.85 -0.7
577,113 - GFF1899 0.85 +0.8
577,113 - GFF1899 0.85 -0.4
577,113 - GFF1899 0.85 -0.7
577,113 - GFF1899 0.85 +0.2
577,310 + -0.1
577,310 + +0.4
577,310 + -1.5
577,477 + +0.6
577,589 + -1.4
577,589 + +0.2
577,590 - +0.6
577,613 + -1.5
577,613 + -0.5
577,613 + -1.7
577,613 + -0.9
577,613 + -0.5
577,614 - +0.1
577,614 - +0.5
577,614 - -1.8
577,614 - -0.5
577,614 - +0.7
577,614 - +0.3
578,181 - GFF1900 0.31 +0.4
578,318 + GFF1900 0.46 +0.7
578,318 + GFF1900 0.46 +3.1
578,318 + GFF1900 0.46 +0.9
578,319 - GFF1900 0.47 +0.1
578,319 - GFF1900 0.47 +1.8
578,319 - GFF1900 0.47 +0.8
578,319 - GFF1900 0.47 +1.0
578,319 - GFF1900 0.47 +0.7
578,319 - GFF1900 0.47 +0.7

Or see this region's nucleotide sequence