Strain Fitness in Variovorax sp. SCN45 around GFF1408

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1405 and GFF1406 overlap by 4 nucleotidesGFF1406 and GFF1407 are separated by 59 nucleotidesGFF1407 and GFF1408 are separated by 49 nucleotidesGFF1408 and GFF1409 are separated by 16 nucleotides GFF1405 - hypothetical protein, at 754,130 to 754,546 GFF1405 GFF1406 - hypothetical protein, at 754,543 to 754,908 GFF1406 GFF1407 - hypothetical protein, at 754,968 to 755,483 GFF1407 GFF1408 - hypothetical protein, at 755,533 to 755,859 GFF1408 GFF1409 - hypothetical protein, at 755,876 to 756,814 GFF1409 Position (kb) 755 756Strain fitness (log2 ratio) -2 -1 0 1 2 3at 754.556 kb on + strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.557 kb on - strandat 754.745 kb on + strand, within GFF1406at 754.802 kb on + strand, within GFF1406at 754.802 kb on + strand, within GFF1406at 754.802 kb on + strand, within GFF1406at 754.802 kb on + strand, within GFF1406at 754.802 kb on + strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.803 kb on - strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.865 kb on + strand, within GFF1406at 754.866 kb on - strand, within GFF1406at 754.866 kb on - strand, within GFF1406at 754.866 kb on - strand, within GFF1406at 754.866 kb on - strand, within GFF1406at 754.866 kb on - strand, within GFF1406at 755.093 kb on - strand, within GFF1407at 755.093 kb on - strand, within GFF1407at 755.093 kb on - strand, within GFF1407at 755.190 kb on + strand, within GFF1407at 755.191 kb on - strand, within GFF1407at 755.494 kb on + strandat 755.495 kb on - strandat 755.495 kb on - strandat 755.495 kb on - strandat 755.534 kb on + strandat 755.534 kb on + strandat 755.534 kb on + strandat 755.534 kb on + strandat 755.535 kb on - strandat 755.535 kb on - strandat 755.561 kb on + strandat 755.561 kb on + strandat 755.561 kb on + strandat 755.561 kb on + strandat 755.562 kb on - strandat 755.562 kb on - strandat 755.562 kb on - strandat 755.562 kb on - strandat 755.594 kb on + strand, within GFF1408at 755.594 kb on + strand, within GFF1408at 755.594 kb on + strand, within GFF1408at 755.594 kb on + strand, within GFF1408at 755.595 kb on - strand, within GFF1408at 755.595 kb on - strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.675 kb on + strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.676 kb on - strand, within GFF1408at 755.845 kb on + strandat 755.845 kb on + strandat 755.845 kb on + strandat 755.845 kb on + strandat 755.845 kb on + strandat 755.846 kb on - strandat 755.846 kb on - strandat 755.846 kb on - strandat 755.846 kb on - strandat 755.846 kb on - strandat 755.846 kb on - strandat 755.846 kb on - strandat 755.846 kb on - strandat 755.846 kb on - strandat 755.846 kb on - strandat 755.887 kb on - strandat 755.887 kb on - strandat 756.297 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.591 kb on + strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.592 kb on - strand, within GFF1409at 756.603 kb on + strand, within GFF1409at 756.604 kb on - strand, within GFF1409at 756.727 kb on + strandat 756.727 kb on + strandat 756.728 kb on - strandat 756.728 kb on - strandat 756.728 kb on - strandat 756.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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754,556 + -0.5
754,557 - -0.1
754,557 - -0.1
754,557 - -0.6
754,557 - +0.5
754,557 - -0.6
754,557 - -2.2
754,557 - +0.1
754,557 - -0.0
754,557 - +1.0
754,745 + GFF1406 0.55 -1.0
754,802 + GFF1406 0.71 -0.3
754,802 + GFF1406 0.71 +0.2
754,802 + GFF1406 0.71 +0.9
754,802 + GFF1406 0.71 -0.7
754,802 + GFF1406 0.71 +0.4
754,803 - GFF1406 0.71 -1.0
754,803 - GFF1406 0.71 -0.8
754,803 - GFF1406 0.71 +0.6
754,803 - GFF1406 0.71 +0.4
754,803 - GFF1406 0.71 -0.3
754,803 - GFF1406 0.71 +0.5
754,803 - GFF1406 0.71 -0.8
754,803 - GFF1406 0.71 -1.4
754,803 - GFF1406 0.71 -0.3
754,803 - GFF1406 0.71 -0.2
754,803 - GFF1406 0.71 -0.9
754,865 + GFF1406 0.88 +1.0
754,865 + GFF1406 0.88 -0.1
754,865 + GFF1406 0.88 +1.1
754,865 + GFF1406 0.88 -0.4
754,865 + GFF1406 0.88 -0.4
754,865 + GFF1406 0.88 -0.0
754,865 + GFF1406 0.88 +0.2
754,865 + GFF1406 0.88 +0.1
754,866 - GFF1406 0.88 -0.6
754,866 - GFF1406 0.88 +0.1
754,866 - GFF1406 0.88 -0.2
754,866 - GFF1406 0.88 +0.4
754,866 - GFF1406 0.88 -0.4
755,093 - GFF1407 0.24 -1.1
755,093 - GFF1407 0.24 -0.2
755,093 - GFF1407 0.24 -1.1
755,190 + GFF1407 0.43 +0.3
755,191 - GFF1407 0.43 -0.4
755,494 + -1.4
755,495 - +0.1
755,495 - +0.4
755,495 - -1.6
755,534 + -0.7
755,534 + +0.5
755,534 + +0.3
755,534 + -0.2
755,535 - -0.3
755,535 - -0.1
755,561 + -0.0
755,561 + +0.2
755,561 + -0.4
755,561 + -0.1
755,562 - +0.4
755,562 - -0.6
755,562 - -0.6
755,562 - -0.5
755,594 + GFF1408 0.19 +0.7
755,594 + GFF1408 0.19 +0.2
755,594 + GFF1408 0.19 -0.8
755,594 + GFF1408 0.19 +0.6
755,595 - GFF1408 0.19 -1.4
755,595 - GFF1408 0.19 -0.1
755,675 + GFF1408 0.43 +0.9
755,675 + GFF1408 0.43 -0.0
755,675 + GFF1408 0.43 +0.0
755,675 + GFF1408 0.43 +0.8
755,675 + GFF1408 0.43 +0.4
755,675 + GFF1408 0.43 +1.1
755,675 + GFF1408 0.43 +0.4
755,675 + GFF1408 0.43 -0.1
755,675 + GFF1408 0.43 +2.8
755,675 + GFF1408 0.43 +1.4
755,675 + GFF1408 0.43 -0.2
755,675 + GFF1408 0.43 +0.4
755,675 + GFF1408 0.43 +0.3
755,675 + GFF1408 0.43 +0.4
755,675 + GFF1408 0.43 +0.9
755,676 - GFF1408 0.44 -0.6
755,676 - GFF1408 0.44 +1.6
755,676 - GFF1408 0.44 +0.2
755,676 - GFF1408 0.44 -1.4
755,676 - GFF1408 0.44 +0.3
755,676 - GFF1408 0.44 -0.6
755,676 - GFF1408 0.44 -1.5
755,676 - GFF1408 0.44 -0.4
755,676 - GFF1408 0.44 -0.3
755,676 - GFF1408 0.44 -0.1
755,676 - GFF1408 0.44 +0.4
755,676 - GFF1408 0.44 +0.1
755,676 - GFF1408 0.44 -0.9
755,676 - GFF1408 0.44 -0.2
755,676 - GFF1408 0.44 -1.4
755,676 - GFF1408 0.44 -1.6
755,676 - GFF1408 0.44 +2.0
755,676 - GFF1408 0.44 -0.2
755,845 + -0.9
755,845 + +0.5
755,845 + +0.8
755,845 + +1.2
755,845 + -0.2
755,846 - -1.7
755,846 - -0.4
755,846 - -1.1
755,846 - +0.4
755,846 - -0.4
755,846 - -0.8
755,846 - -0.3
755,846 - +0.3
755,846 - -0.1
755,846 - -0.7
755,887 - +0.9
755,887 - +0.1
756,297 + GFF1409 0.45 -0.3
756,591 + GFF1409 0.76 +0.3
756,591 + GFF1409 0.76 -0.6
756,591 + GFF1409 0.76 +0.0
756,591 + GFF1409 0.76 +1.3
756,591 + GFF1409 0.76 -1.4
756,591 + GFF1409 0.76 -0.5
756,592 - GFF1409 0.76 -0.7
756,592 - GFF1409 0.76 +0.6
756,592 - GFF1409 0.76 -1.0
756,592 - GFF1409 0.76 +0.1
756,592 - GFF1409 0.76 -0.8
756,592 - GFF1409 0.76 -1.2
756,603 + GFF1409 0.77 -0.7
756,604 - GFF1409 0.78 -0.7
756,727 + -0.9
756,727 + -0.3
756,728 - +0.3
756,728 - -1.7
756,728 - -0.9
756,728 - -1.7

Or see this region's nucleotide sequence