Strain Fitness in Variovorax sp. SCN45 around GFF1154

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1152 and GFF1153 are separated by 31 nucleotidesGFF1153 and GFF1154 overlap by 4 nucleotidesGFF1154 and GFF1155 are separated by 14 nucleotidesGFF1155 and GFF1156 are separated by 16 nucleotides GFF1152 - Lysine decarboxylase family, at 469,555 to 470,145 GFF1152 GFF1153 - Diacylglycerol kinase (EC 2.7.1.107), at 470,177 to 470,584 GFF1153 GFF1154 - Putative transmembrane protein, at 470,581 to 471,147 GFF1154 GFF1155 - Putative transmembrane protein, at 471,162 to 471,986 GFF1155 GFF1156 - Putative transmembrane protein, at 472,003 to 472,425 GFF1156 Position (kb) 470 471 472Strain fitness (log2 ratio) -2 -1 0 1 2 3at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.722 kb on - strand, within GFF1152at 469.722 kb on - strand, within GFF1152at 469.724 kb on + strand, within GFF1152at 469.725 kb on - strand, within GFF1152at 469.725 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.783 kb on + strand, within GFF1154at 470.840 kb on - strand, within GFF1154at 470.841 kb on + strand, within GFF1154at 470.841 kb on + strand, within GFF1154at 470.841 kb on + strand, within GFF1154at 470.842 kb on - strand, within GFF1154at 470.842 kb on - strand, within GFF1154at 470.872 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.909 kb on - strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.210 kb on + strandat 471.210 kb on + strandat 471.211 kb on - strandat 471.211 kb on - strandat 471.211 kb on - strandat 471.211 kb on - strandat 471.335 kb on + strand, within GFF1155at 471.526 kb on + strand, within GFF1155at 471.526 kb on + strand, within GFF1155at 471.526 kb on + strand, within GFF1155at 471.527 kb on - strand, within GFF1155at 471.527 kb on - strand, within GFF1155at 471.527 kb on - strand, within GFF1155at 471.527 kb on - strand, within GFF1155at 471.527 kb on - strand, within GFF1155at 471.679 kb on + strand, within GFF1155at 471.679 kb on + strand, within GFF1155at 471.679 kb on + strand, within GFF1155at 471.680 kb on - strand, within GFF1155at 471.680 kb on - strand, within GFF1155at 471.680 kb on - strand, within GFF1155at 471.680 kb on - strand, within GFF1155at 471.956 kb on + strandat 471.956 kb on + strandat 471.956 kb on + strandat 471.956 kb on + strandat 471.956 kb on + strandat 471.956 kb on + strandat 471.956 kb on + strandat 471.957 kb on - strandat 471.957 kb on - strandat 471.957 kb on - strandat 471.957 kb on - strandat 472.053 kb on + strand, within GFF1156at 472.054 kb on - strand, within GFF1156at 472.054 kb on - strand, within GFF1156at 472.135 kb on + strand, within GFF1156at 472.135 kb on + strand, within GFF1156at 472.135 kb on + strand, within GFF1156at 472.136 kb on - strand, within GFF1156at 472.136 kb on - strand, within GFF1156at 472.136 kb on - strand, within GFF1156

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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469,721 + GFF1152 0.28 -0.1
469,721 + GFF1152 0.28 -0.1
469,721 + GFF1152 0.28 -1.1
469,721 + GFF1152 0.28 +0.5
469,721 + GFF1152 0.28 +0.1
469,721 + GFF1152 0.28 +0.1
469,721 + GFF1152 0.28 +0.4
469,721 + GFF1152 0.28 +0.0
469,722 - GFF1152 0.28 +0.8
469,722 - GFF1152 0.28 -0.5
469,724 + GFF1152 0.29 -0.5
469,725 - GFF1152 0.29 +0.7
469,725 - GFF1152 0.29 -0.8
470,025 - GFF1152 0.80 +1.9
470,025 - GFF1152 0.80 +0.1
470,025 - GFF1152 0.80 -0.4
470,025 - GFF1152 0.80 +0.2
470,025 - GFF1152 0.80 +0.3
470,025 - GFF1152 0.80 +1.2
470,025 - GFF1152 0.80 -1.1
470,117 + +0.1
470,117 + +2.8
470,117 + +0.6
470,117 + +0.2
470,117 + -0.7
470,117 + +0.2
470,117 + -0.7
470,117 + +0.1
470,118 - +0.2
470,118 - -0.6
470,118 - +0.3
470,118 - -0.0
470,118 - -0.4
470,118 - -0.6
470,118 - -0.3
470,783 + GFF1154 0.36 -0.6
470,840 - GFF1154 0.46 -0.6
470,841 + GFF1154 0.46 -1.5
470,841 + GFF1154 0.46 -1.0
470,841 + GFF1154 0.46 -0.3
470,842 - GFF1154 0.46 +1.1
470,842 - GFF1154 0.46 -0.6
470,872 + GFF1154 0.51 -1.1
470,894 + GFF1154 0.55 -0.8
470,894 + GFF1154 0.55 -1.1
470,894 + GFF1154 0.55 -1.3
470,894 + GFF1154 0.55 -2.6
470,894 + GFF1154 0.55 -1.2
470,894 + GFF1154 0.55 -0.9
470,894 + GFF1154 0.55 -0.5
470,895 - GFF1154 0.55 -1.5
470,895 - GFF1154 0.55 -0.8
470,895 - GFF1154 0.55 -0.8
470,895 - GFF1154 0.55 -0.5
470,909 - GFF1154 0.58 +0.4
471,026 + GFF1154 0.78 +0.1
471,026 + GFF1154 0.78 +0.2
471,026 + GFF1154 0.78 -1.6
471,026 + GFF1154 0.78 +0.5
471,026 + GFF1154 0.78 -1.4
471,026 + GFF1154 0.78 -0.2
471,026 + GFF1154 0.78 -1.8
471,026 + GFF1154 0.78 -0.7
471,027 - GFF1154 0.79 -0.7
471,027 - GFF1154 0.79 -0.5
471,027 - GFF1154 0.79 -1.1
471,027 - GFF1154 0.79 -0.2
471,027 - GFF1154 0.79 -0.3
471,027 - GFF1154 0.79 +0.1
471,210 + -0.7
471,210 + +0.5
471,211 - -1.8
471,211 - +0.1
471,211 - -0.0
471,211 - -0.4
471,335 + GFF1155 0.21 -1.0
471,526 + GFF1155 0.44 -0.6
471,526 + GFF1155 0.44 -0.1
471,526 + GFF1155 0.44 -1.5
471,527 - GFF1155 0.44 -1.5
471,527 - GFF1155 0.44 -1.1
471,527 - GFF1155 0.44 -0.4
471,527 - GFF1155 0.44 -1.5
471,527 - GFF1155 0.44 -0.4
471,679 + GFF1155 0.63 -0.1
471,679 + GFF1155 0.63 +1.9
471,679 + GFF1155 0.63 -1.2
471,680 - GFF1155 0.63 -0.8
471,680 - GFF1155 0.63 -1.1
471,680 - GFF1155 0.63 +0.2
471,680 - GFF1155 0.63 -0.9
471,956 + -0.3
471,956 + -0.1
471,956 + -0.6
471,956 + +0.3
471,956 + +0.0
471,956 + -2.0
471,956 + +0.6
471,957 - -1.1
471,957 - +0.7
471,957 - -1.0
471,957 - +0.2
472,053 + GFF1156 0.12 -0.5
472,054 - GFF1156 0.12 +1.3
472,054 - GFF1156 0.12 +1.9
472,135 + GFF1156 0.31 +0.7
472,135 + GFF1156 0.31 +0.5
472,135 + GFF1156 0.31 +1.5
472,136 - GFF1156 0.31 -0.8
472,136 - GFF1156 0.31 +1.5
472,136 - GFF1156 0.31 -0.8

Or see this region's nucleotide sequence