Strain Fitness in Variovorax sp. SCN45 around GFF721

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF719 and GFF720 are separated by 15 nucleotidesGFF720 and GFF721 overlap by 4 nucleotidesGFF721 and GFF722 overlap by 4 nucleotidesGFF722 and GFF723 are separated by 76 nucleotides GFF719 - no description, at 777,596 to 778,591 GFF719 GFF720 - no description, at 778,607 to 778,771 GFF720 GFF721 - O-acetyl-ADP-ribose deacetylase, at 778,768 to 779,274 GFF721 GFF722 - hypothetical protein, at 779,271 to 780,047 GFF722 GFF723 - RNA polymerase ECF-type sigma factor, at 780,124 to 780,633 GFF723 Position (kb) 778 779 780Strain fitness (log2 ratio) -2 -1 0 1 2at 777.883 kb on - strand, within GFF719at 777.883 kb on - strand, within GFF719at 777.906 kb on + strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.907 kb on - strand, within GFF719at 777.922 kb on - strand, within GFF719at 777.993 kb on + strand, within GFF719at 777.994 kb on - strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.074 kb on + strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.075 kb on - strand, within GFF719at 778.143 kb on + strand, within GFF719at 778.143 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.146 kb on + strand, within GFF719at 778.147 kb on - strand, within GFF719at 778.147 kb on - strand, within GFF719at 778.147 kb on - strand, within GFF719at 778.224 kb on + strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.225 kb on - strand, within GFF719at 778.263 kb on + strand, within GFF719at 778.263 kb on + strand, within GFF719at 778.264 kb on - strand, within GFF719at 778.264 kb on - strand, within GFF719at 778.288 kb on - strand, within GFF719at 778.317 kb on + strand, within GFF719at 778.318 kb on - strand, within GFF719at 778.479 kb on + strand, within GFF719at 778.479 kb on + strand, within GFF719at 778.480 kb on - strand, within GFF719at 778.480 kb on - strand, within GFF719at 778.480 kb on - strand, within GFF719at 778.668 kb on + strand, within GFF720at 778.668 kb on + strand, within GFF720at 778.668 kb on + strand, within GFF720at 778.668 kb on + strand, within GFF720at 778.735 kb on + strand, within GFF720at 778.735 kb on + strand, within GFF720at 778.735 kb on + strand, within GFF720at 778.736 kb on - strand, within GFF720at 778.995 kb on + strand, within GFF721at 778.995 kb on + strand, within GFF721at 778.996 kb on - strand, within GFF721at 778.996 kb on - strand, within GFF721at 778.996 kb on - strand, within GFF721at 778.996 kb on - strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.177 kb on + strand, within GFF721at 779.178 kb on - strand, within GFF721at 779.255 kb on - strandat 779.286 kb on + strandat 779.287 kb on - strandat 779.287 kb on - strandat 779.319 kb on + strandat 779.730 kb on + strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.851 kb on - strand, within GFF722at 779.851 kb on - strand, within GFF722at 779.925 kb on + strand, within GFF722at 779.926 kb on - strand, within GFF722at 779.926 kb on - strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 780.169 kb on + strandat 780.169 kb on + strandat 780.169 kb on + strandat 780.169 kb on + strandat 780.170 kb on - strandat 780.170 kb on - strandat 780.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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777,883 - GFF719 0.29 +0.4
777,883 - GFF719 0.29 +0.6
777,906 + GFF719 0.31 -0.4
777,907 - GFF719 0.31 +0.4
777,907 - GFF719 0.31 -0.7
777,907 - GFF719 0.31 -0.0
777,907 - GFF719 0.31 -1.1
777,907 - GFF719 0.31 -1.0
777,922 - GFF719 0.33 -0.2
777,993 + GFF719 0.40 +1.9
777,994 - GFF719 0.40 -0.5
778,074 + GFF719 0.48 -0.1
778,074 + GFF719 0.48 -2.0
778,074 + GFF719 0.48 +0.5
778,074 + GFF719 0.48 +0.2
778,074 + GFF719 0.48 -0.1
778,074 + GFF719 0.48 -0.2
778,074 + GFF719 0.48 -0.1
778,074 + GFF719 0.48 +0.2
778,075 - GFF719 0.48 +1.5
778,075 - GFF719 0.48 -0.2
778,075 - GFF719 0.48 +0.0
778,075 - GFF719 0.48 -1.0
778,075 - GFF719 0.48 +0.4
778,075 - GFF719 0.48 +0.6
778,075 - GFF719 0.48 -1.5
778,075 - GFF719 0.48 -0.4
778,075 - GFF719 0.48 +0.1
778,075 - GFF719 0.48 +0.3
778,143 + GFF719 0.55 -0.4
778,143 + GFF719 0.55 +0.4
778,146 + GFF719 0.55 +1.3
778,146 + GFF719 0.55 +0.5
778,146 + GFF719 0.55 +1.8
778,146 + GFF719 0.55 +0.1
778,146 + GFF719 0.55 -1.0
778,147 - GFF719 0.55 -0.2
778,147 - GFF719 0.55 -0.0
778,147 - GFF719 0.55 +0.2
778,224 + GFF719 0.63 -0.3
778,225 - GFF719 0.63 -2.4
778,225 - GFF719 0.63 +0.5
778,225 - GFF719 0.63 -0.3
778,225 - GFF719 0.63 +0.5
778,263 + GFF719 0.67 +0.1
778,263 + GFF719 0.67 -0.5
778,264 - GFF719 0.67 -0.3
778,264 - GFF719 0.67 -0.8
778,288 - GFF719 0.69 -0.2
778,317 + GFF719 0.72 -0.0
778,318 - GFF719 0.72 +0.2
778,479 + GFF719 0.89 -0.9
778,479 + GFF719 0.89 -0.5
778,480 - GFF719 0.89 -1.3
778,480 - GFF719 0.89 +1.3
778,480 - GFF719 0.89 -0.5
778,668 + GFF720 0.37 +0.1
778,668 + GFF720 0.37 -0.9
778,668 + GFF720 0.37 +0.0
778,668 + GFF720 0.37 -0.3
778,735 + GFF720 0.78 -0.2
778,735 + GFF720 0.78 +0.7
778,735 + GFF720 0.78 -0.2
778,736 - GFF720 0.78 -1.4
778,995 + GFF721 0.45 -0.9
778,995 + GFF721 0.45 -0.8
778,996 - GFF721 0.45 -1.0
778,996 - GFF721 0.45 +1.5
778,996 - GFF721 0.45 -0.6
778,996 - GFF721 0.45 +0.4
779,131 + GFF721 0.72 -0.8
779,131 + GFF721 0.72 +0.5
779,131 + GFF721 0.72 +0.1
779,131 + GFF721 0.72 -1.3
779,131 + GFF721 0.72 -0.6
779,131 + GFF721 0.72 -0.5
779,131 + GFF721 0.72 -2.0
779,131 + GFF721 0.72 -0.1
779,132 - GFF721 0.72 +0.2
779,132 - GFF721 0.72 +1.6
779,132 - GFF721 0.72 -1.0
779,132 - GFF721 0.72 +1.2
779,132 - GFF721 0.72 +0.4
779,132 - GFF721 0.72 +0.1
779,132 - GFF721 0.72 -0.3
779,132 - GFF721 0.72 -1.1
779,132 - GFF721 0.72 -1.6
779,132 - GFF721 0.72 -0.3
779,132 - GFF721 0.72 -1.1
779,132 - GFF721 0.72 -0.0
779,177 + GFF721 0.81 -0.2
779,178 - GFF721 0.81 -1.2
779,255 - -0.4
779,286 + -0.2
779,287 - -0.7
779,287 - -0.2
779,319 + -0.6
779,730 + GFF722 0.59 -0.3
779,731 - GFF722 0.59 -0.0
779,731 - GFF722 0.59 +0.2
779,731 - GFF722 0.59 +1.2
779,850 + GFF722 0.75 +0.3
779,850 + GFF722 0.75 -0.6
779,850 + GFF722 0.75 +1.2
779,850 + GFF722 0.75 -0.6
779,850 + GFF722 0.75 -0.3
779,851 - GFF722 0.75 -0.1
779,851 - GFF722 0.75 -0.2
779,925 + GFF722 0.84 -0.6
779,926 - GFF722 0.84 -0.5
779,926 - GFF722 0.84 -0.2
779,928 + GFF722 0.85 +0.7
779,928 + GFF722 0.85 -0.5
779,928 + GFF722 0.85 +0.5
779,929 - GFF722 0.85 -0.9
779,929 - GFF722 0.85 -0.2
779,929 - GFF722 0.85 +0.2
779,929 - GFF722 0.85 +0.7
779,929 - GFF722 0.85 -1.2
779,929 - GFF722 0.85 +0.1
779,929 - GFF722 0.85 -0.3
780,169 + +0.0
780,169 + +0.2
780,169 + -0.8
780,169 + -1.1
780,170 - -0.7
780,170 - +0.5
780,170 - -0.7

Or see this region's nucleotide sequence