Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF710 and GFF711 overlap by 4 nucleotides GFF711 and GFF712 overlap by 4 nucleotides
GFF710 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 768,537 to 769,481
GFF710
GFF711 - KEGG: ribose transport system permease protein, at 769,478 to 770,443
GFF711
GFF712 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 770,440 to 771,990
GFF712
Position (kb) 769
770
771 Strain fitness (log2 ratio) -2
-1
0
1 at 768.526 kb on + strand at 768.527 kb on - strand at 768.527 kb on - strand at 768.655 kb on + strand, within GFF710 at 768.656 kb on - strand, within GFF710 at 768.656 kb on - strand, within GFF710 at 768.754 kb on + strand, within GFF710 at 768.754 kb on + strand, within GFF710 at 768.755 kb on - strand, within GFF710 at 769.039 kb on + strand, within GFF710 at 769.060 kb on + strand, within GFF710 at 769.061 kb on - strand, within GFF710 at 769.463 kb on + strand at 769.464 kb on - strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.755 kb on + strand, within GFF711 at 769.755 kb on + strand, within GFF711 at 769.756 kb on - strand, within GFF711 at 769.756 kb on - strand, within GFF711 at 769.968 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.984 kb on - strand, within GFF711 at 770.187 kb on + strand, within GFF711 at 770.187 kb on + strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.370 kb on + strand at 770.370 kb on + strand at 770.370 kb on + strand at 770.370 kb on + strand at 770.371 kb on - strand at 770.371 kb on - strand at 770.630 kb on + strand, within GFF712 at 770.649 kb on - strand, within GFF712 at 770.649 kb on - strand, within GFF712 at 770.649 kb on - strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 768,526 + +0.1 768,527 - -1.8 768,527 - -1.0 768,655 + GFF710 0.12 -0.9 768,656 - GFF710 0.13 -0.4 768,656 - GFF710 0.13 -0.0 768,754 + GFF710 0.23 -1.4 768,754 + GFF710 0.23 -0.6 768,755 - GFF710 0.23 -0.8 769,039 + GFF710 0.53 +0.2 769,060 + GFF710 0.55 +0.2 769,061 - GFF710 0.55 -0.4 769,463 + -0.4 769,464 - -1.0 769,509 + -0.3 769,509 + +0.1 769,509 + -0.6 769,509 + -0.4 769,509 + +0.2 769,510 - +0.4 769,510 - +0.4 769,510 - +0.4 769,510 - -0.4 769,510 - -0.5 769,510 - +1.2 769,755 + GFF711 0.29 -0.9 769,755 + GFF711 0.29 +0.0 769,756 - GFF711 0.29 -1.1 769,756 - GFF711 0.29 -0.2 769,968 + GFF711 0.51 -0.1 769,983 + GFF711 0.52 -0.1 769,983 + GFF711 0.52 -0.8 769,983 + GFF711 0.52 +0.2 769,984 - GFF711 0.52 -0.6 770,187 + GFF711 0.73 -0.5 770,187 + GFF711 0.73 -1.8 770,188 - GFF711 0.73 -0.2 770,188 - GFF711 0.73 +0.9 770,188 - GFF711 0.73 -0.8 770,370 + -0.5 770,370 + +0.3 770,370 + -0.2 770,370 + +0.1 770,371 - +0.7 770,371 - -0.8 770,630 + GFF712 0.12 +0.3 770,649 - GFF712 0.13 -0.6 770,649 - GFF712 0.13 -2.1 770,649 - GFF712 0.13 +1.1 771,368 + GFF712 0.60 -1.1 771,368 + GFF712 0.60 +0.5 771,368 + GFF712 0.60 -0.1 771,368 + GFF712 0.60 -0.8 771,368 + GFF712 0.60 -0.2 771,368 + GFF712 0.60 +0.7 771,368 + GFF712 0.60 -0.6 771,368 + GFF712 0.60 +0.1 771,368 + GFF712 0.60 -0.2 771,368 + GFF712 0.60 +0.6 771,369 - GFF712 0.60 +1.2 771,369 - GFF712 0.60 -2.0 771,369 - GFF712 0.60 -2.7 771,369 - GFF712 0.60 -2.7 771,369 - GFF712 0.60 +0.2 771,369 - GFF712 0.60 +0.5 771,369 - GFF712 0.60 +0.1
Or see this region's nucleotide sequence