Strain Fitness in Variovorax sp. SCN45 around GFF6937

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
10,836	+				-0.7
10,836	+				+0.3
10,837	-				-0.0
10,837	-				-1.5
10,837	-				-0.6
11,107	+				+0.0
11,108	-				-0.3
11,353	+		GFF6936	0.43	+0.3
11,353	+		GFF6936	0.43	-0.8
11,353	+		GFF6936	0.43	+0.7
11,353	+		GFF6936	0.43	-1.6
11,353	+		GFF6936	0.43	-2.7
11,354	-		GFF6936	0.43	-0.9
11,354	-		GFF6936	0.43	-0.2
11,354	-		GFF6936	0.43	-0.4
11,354	-		GFF6936	0.43	-0.4
11,452	+		GFF6936	0.56	-1.2
11,452	+		GFF6936	0.56	+0.8
11,452	+		GFF6936	0.56	+2.0
11,453	-		GFF6936	0.57	+0.2
11,823	+				-0.1
11,823	+				-0.3
11,824	-				-0.4
11,862	+				+0.1
11,863	-				+0.2
11,884	-		GFF6937	0.11	-0.1
11,899	-		GFF6937	0.13	-0.7
11,953	-		GFF6937	0.18	-0.3
12,222	+		GFF6937	0.43	-0.7
12,322	-		GFF6937	0.52	+0.6
12,351	+		GFF6937	0.54	-0.7
12,351	+		GFF6937	0.54	-0.5
12,351	+		GFF6937	0.54	+0.7
12,378	+		GFF6937	0.57	-0.3
12,378	+		GFF6937	0.57	+0.2
12,379	-		GFF6937	0.57	+0.4
12,400	-		GFF6937	0.59	+0.4
12,429	+		GFF6937	0.62	-2.1
12,429	+		GFF6937	0.62	+0.3
12,489	+		GFF6937	0.67	-0.4
12,490	-		GFF6937	0.67	+0.7
12,490	-		GFF6937	0.67	-1.0
12,490	-		GFF6937	0.67	+0.1
12,519	+		GFF6937	0.70	-0.1
12,519	+		GFF6937	0.70	-0.9
12,585	+		GFF6937	0.76	+0.3
12,586	-		GFF6937	0.76	-0.8
12,586	-		GFF6937	0.76	-0.6
12,586	-		GFF6937	0.76	-0.5
12,586	-		GFF6937	0.76	-0.3
12,700	-		GFF6937	0.87	+0.1
12,700	-		GFF6937	0.87	+0.1
12,700	-		GFF6937	0.87	-0.2
12,700	-		GFF6937	0.87	+0.2
12,804	+				+0.5
12,804	+				-0.9
12,804	+				+0.9
12,972	-				-0.2
13,277	+		GFF6938	0.29	-1.3
13,277	+		GFF6938	0.29	-0.2
13,277	+		GFF6938	0.29	+0.2
13,311	-		GFF6938	0.31	+0.2
13,311	-		GFF6938	0.31	-0.1
13,451	+		GFF6938	0.41	-0.7
13,451	+		GFF6938	0.41	+0.7
13,452	-		GFF6938	0.41	-0.2
13,547	+		GFF6938	0.47	+0.5
13,547	+		GFF6938	0.47	-0.4