Strain Fitness in Variovorax sp. SCN45 around GFF6926

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6925 and GFF6926 are separated by 9 nucleotidesGFF6926 and GFF6927 are separated by 87 nucleotidesGFF6927 and GFF6928 overlap by 1 nucleotidesGFF6928 and GFF6929 are separated by 11 nucleotides GFF6925 - Acetyl-CoA synthetase (EC 6.2.1.1), at 3,767 to 5,743 GFF6925 GFF6926 - MBL-fold metallo-hydrolase superfamily, at 5,753 to 6,646 GFF6926 GFF6927 - Transcriptional regulator, ArsR family, at 6,734 to 7,057 GFF6927 GFF6928 - Putative transmembrane protein, at 7,057 to 7,491 GFF6928 GFF6929 - GENE II AND X PROTEINS, at 7,503 to 7,925 GFF6929 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 4.784 kb on + strand, within GFF6925at 4.841 kb on + strand, within GFF6925at 4.841 kb on + strand, within GFF6925at 5.252 kb on + strand, within GFF6925at 5.809 kb on - strandat 6.039 kb on + strand, within GFF6926at 6.039 kb on + strand, within GFF6926at 6.039 kb on + strand, within GFF6926at 6.039 kb on + strand, within GFF6926at 6.039 kb on + strand, within GFF6926at 6.039 kb on + strand, within GFF6926at 6.039 kb on + strand, within GFF6926at 6.039 kb on + strand, within GFF6926at 6.040 kb on - strand, within GFF6926at 6.040 kb on - strand, within GFF6926at 6.040 kb on - strand, within GFF6926at 6.040 kb on - strand, within GFF6926at 6.040 kb on - strand, within GFF6926at 6.040 kb on - strand, within GFF6926at 6.040 kb on - strand, within GFF6926at 6.040 kb on - strand, within GFF6926at 6.087 kb on + strand, within GFF6926at 6.087 kb on + strand, within GFF6926at 6.186 kb on + strand, within GFF6926at 6.187 kb on - strand, within GFF6926at 6.478 kb on - strand, within GFF6926at 6.478 kb on - strand, within GFF6926at 6.478 kb on - strand, within GFF6926at 6.531 kb on + strand, within GFF6926at 6.532 kb on - strand, within GFF6926at 6.588 kb on + strandat 6.588 kb on + strandat 6.588 kb on + strandat 6.588 kb on + strandat 6.588 kb on + strandat 6.588 kb on + strandat 6.589 kb on - strandat 6.589 kb on - strandat 6.589 kb on - strandat 6.589 kb on - strandat 6.930 kb on + strand, within GFF6927at 6.930 kb on + strand, within GFF6927at 6.931 kb on - strand, within GFF6927at 6.931 kb on - strand, within GFF6927at 6.931 kb on - strand, within GFF6927at 6.984 kb on - strand, within GFF6927at 6.984 kb on - strand, within GFF6927at 7.028 kb on + strandat 7.029 kb on - strandat 7.037 kb on + strandat 7.037 kb on + strandat 7.037 kb on + strandat 7.037 kb on + strandat 7.037 kb on + strandat 7.261 kb on + strand, within GFF6928at 7.262 kb on - strand, within GFF6928at 7.262 kb on - strand, within GFF6928at 7.262 kb on - strand, within GFF6928at 7.262 kb on - strand, within GFF6928

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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4,784 + GFF6925 0.51 +1.1
4,841 + GFF6925 0.54 -1.6
4,841 + GFF6925 0.54 +2.1
5,252 + GFF6925 0.75 -0.6
5,809 - +0.1
6,039 + GFF6926 0.32 -0.9
6,039 + GFF6926 0.32 -0.2
6,039 + GFF6926 0.32 -0.3
6,039 + GFF6926 0.32 -0.3
6,039 + GFF6926 0.32 -1.0
6,039 + GFF6926 0.32 -0.4
6,039 + GFF6926 0.32 +0.1
6,039 + GFF6926 0.32 -0.6
6,040 - GFF6926 0.32 -0.9
6,040 - GFF6926 0.32 -0.8
6,040 - GFF6926 0.32 +0.4
6,040 - GFF6926 0.32 +0.0
6,040 - GFF6926 0.32 +2.7
6,040 - GFF6926 0.32 -0.4
6,040 - GFF6926 0.32 -0.5
6,040 - GFF6926 0.32 -2.2
6,087 + GFF6926 0.37 -0.3
6,087 + GFF6926 0.37 -0.6
6,186 + GFF6926 0.48 -1.6
6,187 - GFF6926 0.49 -0.7
6,478 - GFF6926 0.81 -0.7
6,478 - GFF6926 0.81 -2.1
6,478 - GFF6926 0.81 -0.7
6,531 + GFF6926 0.87 -0.1
6,532 - GFF6926 0.87 +0.0
6,588 + +1.1
6,588 + +0.5
6,588 + -0.7
6,588 + -0.3
6,588 + -0.7
6,588 + -1.5
6,589 - -1.3
6,589 - +1.0
6,589 - -0.0
6,589 - +0.1
6,930 + GFF6927 0.60 +0.9
6,930 + GFF6927 0.60 +0.4
6,931 - GFF6927 0.61 -0.8
6,931 - GFF6927 0.61 -0.5
6,931 - GFF6927 0.61 -0.1
6,984 - GFF6927 0.77 -0.7
6,984 - GFF6927 0.77 -0.0
7,028 + +0.7
7,029 - -1.2
7,037 + +0.6
7,037 + -1.2
7,037 + +1.0
7,037 + +1.0
7,037 + -1.4
7,261 + GFF6928 0.47 +0.2
7,262 - GFF6928 0.47 -0.9
7,262 - GFF6928 0.47 +0.1
7,262 - GFF6928 0.47 +0.0
7,262 - GFF6928 0.47 +0.1

Or see this region's nucleotide sequence