Strain Fitness in Variovorax sp. SCN45 around GFF6652

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6650 and GFF6651 overlap by 9 nucleotidesGFF6651 and GFF6652 are separated by 13 nucleotidesGFF6652 and GFF6653 are separated by 53 nucleotides GFF6650 - no description, at 24,107 to 24,991 GFF6650 GFF6651 - Asp/Glu racemase, at 24,983 to 25,624 GFF6651 GFF6652 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 25,638 to 26,552 GFF6652 GFF6653 - Aminotransferase, class III, at 26,606 to 27,940 GFF6653 Position (kb) 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.711 kb on - strand, within GFF6650at 24.711 kb on - strand, within GFF6650at 24.711 kb on - strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.854 kb on + strand, within GFF6650at 24.854 kb on + strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 25.437 kb on + strand, within GFF6651at 25.696 kb on + strandat 25.697 kb on - strandat 25.748 kb on - strand, within GFF6652at 25.748 kb on - strand, within GFF6652at 26.146 kb on + strand, within GFF6652at 26.146 kb on + strand, within GFF6652at 26.146 kb on + strand, within GFF6652at 26.147 kb on - strand, within GFF6652at 26.275 kb on + strand, within GFF6652at 26.275 kb on + strand, within GFF6652at 26.275 kb on + strand, within GFF6652at 26.275 kb on + strand, within GFF6652at 26.276 kb on - strand, within GFF6652at 26.276 kb on - strand, within GFF6652at 26.276 kb on - strand, within GFF6652at 26.276 kb on - strand, within GFF6652at 26.351 kb on - strand, within GFF6652at 26.351 kb on - strand, within GFF6652at 26.380 kb on + strand, within GFF6652at 26.381 kb on - strand, within GFF6652at 26.407 kb on + strand, within GFF6652at 26.752 kb on - strand, within GFF6653at 26.752 kb on - strand, within GFF6653at 26.752 kb on - strand, within GFF6653at 27.030 kb on + strand, within GFF6653at 27.030 kb on + strand, within GFF6653at 27.030 kb on + strand, within GFF6653at 27.031 kb on - strand, within GFF6653at 27.031 kb on - strand, within GFF6653at 27.031 kb on - strand, within GFF6653at 27.031 kb on - strand, within GFF6653at 27.031 kb on - strand, within GFF6653at 27.031 kb on - strand, within GFF6653at 27.031 kb on - strand, within GFF6653at 27.243 kb on + strand, within GFF6653at 27.243 kb on + strand, within GFF6653at 27.243 kb on + strand, within GFF6653at 27.243 kb on + strand, within GFF6653at 27.243 kb on + strand, within GFF6653at 27.243 kb on + strand, within GFF6653at 27.243 kb on + strand, within GFF6653at 27.244 kb on - strand, within GFF6653at 27.244 kb on - strand, within GFF6653at 27.244 kb on - strand, within GFF6653at 27.244 kb on - strand, within GFF6653at 27.276 kb on + strand, within GFF6653at 27.276 kb on + strand, within GFF6653at 27.277 kb on - strand, within GFF6653at 27.403 kb on - strand, within GFF6653at 27.444 kb on + strand, within GFF6653at 27.445 kb on - strand, within GFF6653at 27.445 kb on - strand, within GFF6653at 27.445 kb on - strand, within GFF6653at 27.546 kb on + strand, within GFF6653at 27.546 kb on + strand, within GFF6653at 27.546 kb on + strand, within GFF6653at 27.546 kb on + strand, within GFF6653at 27.546 kb on + strand, within GFF6653at 27.547 kb on - strand, within GFF6653at 27.547 kb on - strand, within GFF6653at 27.547 kb on - strand, within GFF6653at 27.547 kb on - strand, within GFF6653

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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24,671 + GFF6650 0.64 -1.3
24,671 + GFF6650 0.64 -0.7
24,671 + GFF6650 0.64 -1.2
24,671 + GFF6650 0.64 -1.7
24,671 + GFF6650 0.64 -0.6
24,671 + GFF6650 0.64 -1.3
24,671 + GFF6650 0.64 -0.2
24,671 + GFF6650 0.64 +2.3
24,671 + GFF6650 0.64 +0.9
24,671 + GFF6650 0.64 -0.6
24,671 + GFF6650 0.64 -1.0
24,671 + GFF6650 0.64 -0.6
24,672 - GFF6650 0.64 +0.0
24,672 - GFF6650 0.64 -0.8
24,672 - GFF6650 0.64 +0.2
24,672 - GFF6650 0.64 -0.3
24,672 - GFF6650 0.64 -0.5
24,672 - GFF6650 0.64 +0.2
24,672 - GFF6650 0.64 +0.4
24,672 - GFF6650 0.64 -0.1
24,672 - GFF6650 0.64 +0.1
24,672 - GFF6650 0.64 -1.0
24,672 - GFF6650 0.64 +0.1
24,672 - GFF6650 0.64 -1.0
24,672 - GFF6650 0.64 -0.2
24,672 - GFF6650 0.64 -0.2
24,672 - GFF6650 0.64 +1.6
24,672 - GFF6650 0.64 +0.2
24,672 - GFF6650 0.64 -0.2
24,710 + GFF6650 0.68 -0.4
24,710 + GFF6650 0.68 -0.6
24,710 + GFF6650 0.68 +0.3
24,710 + GFF6650 0.68 +0.7
24,710 + GFF6650 0.68 -0.5
24,711 - GFF6650 0.68 +0.3
24,711 - GFF6650 0.68 -0.1
24,711 - GFF6650 0.68 +0.2
24,806 + GFF6650 0.79 +0.8
24,806 + GFF6650 0.79 -0.3
24,806 + GFF6650 0.79 -0.4
24,806 + GFF6650 0.79 +0.5
24,806 + GFF6650 0.79 -0.5
24,806 + GFF6650 0.79 -1.0
24,806 + GFF6650 0.79 +1.0
24,806 + GFF6650 0.79 +0.3
24,806 + GFF6650 0.79 +0.2
24,807 - GFF6650 0.79 +0.0
24,807 - GFF6650 0.79 -2.3
24,807 - GFF6650 0.79 -1.4
24,807 - GFF6650 0.79 -0.5
24,807 - GFF6650 0.79 +0.0
24,807 - GFF6650 0.79 +1.3
24,807 - GFF6650 0.79 +0.1
24,807 - GFF6650 0.79 -0.9
24,854 + GFF6650 0.84 +0.8
24,854 + GFF6650 0.84 +0.1
24,855 - GFF6650 0.85 -0.7
24,855 - GFF6650 0.85 +0.1
24,855 - GFF6650 0.85 +0.3
24,855 - GFF6650 0.85 -0.7
24,855 - GFF6650 0.85 +0.5
25,437 + GFF6651 0.71 -0.4
25,696 + -1.0
25,697 - +0.0
25,748 - GFF6652 0.12 -0.5
25,748 - GFF6652 0.12 -0.7
26,146 + GFF6652 0.56 -0.1
26,146 + GFF6652 0.56 +0.6
26,146 + GFF6652 0.56 +0.1
26,147 - GFF6652 0.56 -0.6
26,275 + GFF6652 0.70 +1.0
26,275 + GFF6652 0.70 -0.4
26,275 + GFF6652 0.70 -1.5
26,275 + GFF6652 0.70 +0.0
26,276 - GFF6652 0.70 -0.5
26,276 - GFF6652 0.70 -0.2
26,276 - GFF6652 0.70 -3.3
26,276 - GFF6652 0.70 -1.2
26,351 - GFF6652 0.78 -0.8
26,351 - GFF6652 0.78 +0.2
26,380 + GFF6652 0.81 -2.2
26,381 - GFF6652 0.81 -1.0
26,407 + GFF6652 0.84 -0.7
26,752 - GFF6653 0.11 -1.3
26,752 - GFF6653 0.11 +0.9
26,752 - GFF6653 0.11 -0.3
27,030 + GFF6653 0.32 +1.1
27,030 + GFF6653 0.32 -0.7
27,030 + GFF6653 0.32 -0.7
27,031 - GFF6653 0.32 +0.3
27,031 - GFF6653 0.32 -0.4
27,031 - GFF6653 0.32 -1.0
27,031 - GFF6653 0.32 -1.8
27,031 - GFF6653 0.32 -0.2
27,031 - GFF6653 0.32 +0.1
27,031 - GFF6653 0.32 -0.3
27,243 + GFF6653 0.48 -0.1
27,243 + GFF6653 0.48 -0.5
27,243 + GFF6653 0.48 +0.7
27,243 + GFF6653 0.48 -0.0
27,243 + GFF6653 0.48 +0.0
27,243 + GFF6653 0.48 -0.6
27,243 + GFF6653 0.48 -0.1
27,244 - GFF6653 0.48 -0.6
27,244 - GFF6653 0.48 -0.4
27,244 - GFF6653 0.48 -1.7
27,244 - GFF6653 0.48 -0.5
27,276 + GFF6653 0.50 -0.4
27,276 + GFF6653 0.50 +1.2
27,277 - GFF6653 0.50 -0.3
27,403 - GFF6653 0.60 +0.5
27,444 + GFF6653 0.63 -0.4
27,445 - GFF6653 0.63 -0.3
27,445 - GFF6653 0.63 -0.3
27,445 - GFF6653 0.63 +0.4
27,546 + GFF6653 0.70 -1.1
27,546 + GFF6653 0.70 -0.1
27,546 + GFF6653 0.70 +0.3
27,546 + GFF6653 0.70 +0.7
27,546 + GFF6653 0.70 -0.5
27,547 - GFF6653 0.70 +0.1
27,547 - GFF6653 0.70 +0.7
27,547 - GFF6653 0.70 -1.0
27,547 - GFF6653 0.70 -1.7

Or see this region's nucleotide sequence