Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6641 and GFF6642 are separated by 13 nucleotides GFF6642 and GFF6643 are separated by 4 nucleotides GFF6643 and GFF6644 are separated by 103 nucleotides
GFF6641 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 14,442 to 15,314
GFF6641
GFF6642 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 15,328 to 16,269
GFF6642
GFF6643 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 16,274 to 17,884
GFF6643
GFF6644 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 17,988 to 19,457
GFF6644
Position (kb) 16
17
18 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 15.332 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.392 kb on + strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.393 kb on - strand at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.695 kb on + strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.696 kb on - strand, within GFF6642 at 15.770 kb on + strand, within GFF6642 at 15.771 kb on - strand, within GFF6642 at 15.812 kb on + strand, within GFF6642 at 15.812 kb on + strand, within GFF6642 at 15.812 kb on + strand, within GFF6642 at 15.813 kb on + strand, within GFF6642 at 15.813 kb on - strand, within GFF6642 at 15.813 kb on - strand, within GFF6642 at 15.824 kb on + strand, within GFF6642 at 15.825 kb on - strand, within GFF6642 at 16.275 kb on + strand at 16.275 kb on + strand at 16.275 kb on + strand at 16.275 kb on + strand at 16.275 kb on + strand at 16.296 kb on + strand at 16.296 kb on + strand at 16.296 kb on + strand at 16.296 kb on + strand at 16.296 kb on + strand at 16.297 kb on - strand at 16.359 kb on + strand at 16.360 kb on - strand at 16.360 kb on - strand at 16.360 kb on - strand at 16.767 kb on + strand, within GFF6643 at 16.768 kb on - strand, within GFF6643 at 16.768 kb on - strand, within GFF6643 at 16.821 kb on + strand, within GFF6643 at 16.821 kb on + strand, within GFF6643 at 16.821 kb on + strand, within GFF6643 at 16.821 kb on + strand, within GFF6643 at 16.822 kb on - strand, within GFF6643 at 16.822 kb on - strand, within GFF6643 at 17.067 kb on + strand, within GFF6643 at 17.068 kb on - strand, within GFF6643 at 17.068 kb on - strand, within GFF6643 at 17.068 kb on - strand, within GFF6643 at 17.068 kb on - strand, within GFF6643 at 17.172 kb on + strand, within GFF6643 at 17.172 kb on + strand, within GFF6643 at 17.173 kb on - strand, within GFF6643 at 17.173 kb on - strand, within GFF6643 at 17.173 kb on - strand, within GFF6643 at 17.173 kb on - strand, within GFF6643 at 17.173 kb on - strand, within GFF6643 at 17.223 kb on + strand, within GFF6643 at 17.223 kb on + strand, within GFF6643 at 17.223 kb on + strand, within GFF6643 at 17.223 kb on + strand, within GFF6643 at 17.223 kb on + strand, within GFF6643 at 17.224 kb on - strand, within GFF6643 at 17.224 kb on - strand, within GFF6643 at 17.286 kb on + strand, within GFF6643 at 17.286 kb on + strand, within GFF6643 at 17.286 kb on + strand, within GFF6643 at 17.286 kb on + strand, within GFF6643 at 17.286 kb on + strand, within GFF6643 at 17.287 kb on - strand, within GFF6643 at 17.287 kb on - strand, within GFF6643 at 17.287 kb on - strand, within GFF6643 at 17.287 kb on - strand, within GFF6643 at 17.287 kb on - strand, within GFF6643 at 17.676 kb on + strand, within GFF6643 at 17.676 kb on + strand, within GFF6643 at 17.676 kb on + strand, within GFF6643 at 17.676 kb on + strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.677 kb on - strand, within GFF6643 at 17.685 kb on + strand, within GFF6643 at 17.685 kb on + strand, within GFF6643 at 17.685 kb on + strand, within GFF6643 at 17.685 kb on + strand, within GFF6643 at 17.685 kb on + strand, within GFF6643 at 17.686 kb on - strand, within GFF6643 at 17.686 kb on - strand, within GFF6643 at 17.686 kb on - strand, within GFF6643 at 17.686 kb on - strand, within GFF6643 at 17.686 kb on - strand, within GFF6643 at 17.706 kb on + strand, within GFF6643 at 17.706 kb on + strand, within GFF6643 at 17.707 kb on - strand, within GFF6643 at 17.707 kb on - strand, within GFF6643 at 17.707 kb on - strand, within GFF6643 at 17.707 kb on - strand, within GFF6643 at 17.707 kb on - strand, within GFF6643 at 17.941 kb on - strand at 17.941 kb on - strand at 17.942 kb on + strand at 17.943 kb on - strand at 17.945 kb on - strand at 17.965 kb on + strand at 17.966 kb on - strand at 18.091 kb on - strand at 18.261 kb on + strand, within GFF6644 at 18.261 kb on + strand, within GFF6644 at 18.261 kb on + strand, within GFF6644 at 18.261 kb on + strand, within GFF6644 at 18.261 kb on + strand, within GFF6644 at 18.262 kb on - strand, within GFF6644 at 18.262 kb on - strand, within GFF6644 at 18.262 kb on - strand, within GFF6644 at 18.262 kb on - strand, within GFF6644 at 18.262 kb on - strand, within GFF6644 at 18.351 kb on + strand, within GFF6644 at 18.351 kb on + strand, within GFF6644 at 18.351 kb on + strand, within GFF6644 at 18.351 kb on + strand, within GFF6644 at 18.351 kb on + strand, within GFF6644 at 18.352 kb on - strand, within GFF6644 at 18.352 kb on - strand, within GFF6644 at 18.413 kb on + strand, within GFF6644 at 18.413 kb on + strand, within GFF6644 at 18.413 kb on + strand, within GFF6644 at 18.414 kb on - strand, within GFF6644 at 18.414 kb on - strand, within GFF6644 at 18.477 kb on + strand, within GFF6644 at 18.478 kb on - strand, within GFF6644 at 18.478 kb on - strand, within GFF6644 at 18.478 kb on - strand, within GFF6644 at 18.495 kb on + strand, within GFF6644 at 18.495 kb on + strand, within GFF6644 at 18.495 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.517 kb on + strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.518 kb on - strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.544 kb on + strand, within GFF6644 at 18.545 kb on - strand, within GFF6644 at 18.545 kb on - strand, within GFF6644 at 18.669 kb on + strand, within GFF6644 at 18.669 kb on + strand, within GFF6644 at 18.840 kb on + strand, within GFF6644 at 18.841 kb on - strand, within GFF6644
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 15,332 + +0.7 15,359 + -0.2 15,359 + -0.1 15,359 + -0.6 15,359 + -0.3 15,359 + +1.0 15,359 + -0.6 15,359 + -0.2 15,360 - +0.0 15,360 - -0.3 15,360 - -0.8 15,360 - -1.1 15,360 - +1.3 15,360 - -0.3 15,360 - -0.1 15,360 - -0.7 15,392 + -1.3 15,392 + -1.7 15,392 + +1.9 15,392 + +1.1 15,392 + +2.3 15,392 + +0.0 15,392 + -1.0 15,392 + -0.3 15,393 - -0.9 15,393 - -2.6 15,393 - -0.3 15,393 - -1.7 15,393 - -1.0 15,393 - -0.1 15,695 + GFF6642 0.39 -0.5 15,695 + GFF6642 0.39 -1.7 15,695 + GFF6642 0.39 -1.1 15,695 + GFF6642 0.39 -1.3 15,695 + GFF6642 0.39 -0.5 15,695 + GFF6642 0.39 -3.4 15,695 + GFF6642 0.39 +1.7 15,695 + GFF6642 0.39 +0.4 15,695 + GFF6642 0.39 -2.4 15,695 + GFF6642 0.39 +0.2 15,696 - GFF6642 0.39 -0.3 15,696 - GFF6642 0.39 +0.2 15,696 - GFF6642 0.39 -0.4 15,696 - GFF6642 0.39 -1.3 15,696 - GFF6642 0.39 -1.0 15,696 - GFF6642 0.39 +0.7 15,696 - GFF6642 0.39 -0.4 15,770 + GFF6642 0.47 -2.0 15,771 - GFF6642 0.47 -0.2 15,812 + GFF6642 0.51 -1.4 15,812 + GFF6642 0.51 -1.1 15,812 + GFF6642 0.51 -1.1 15,813 + GFF6642 0.51 -0.1 15,813 - GFF6642 0.51 +0.1 15,813 - GFF6642 0.51 +0.5 15,824 + GFF6642 0.53 -1.5 15,825 - GFF6642 0.53 +0.1 16,275 + -0.4 16,275 + -0.3 16,275 + +1.3 16,275 + -0.8 16,275 + -0.6 16,296 + +0.6 16,296 + -2.5 16,296 + -1.2 16,296 + +0.3 16,296 + +0.1 16,297 - +0.3 16,359 + -0.3 16,360 - +0.3 16,360 - -0.5 16,360 - +0.4 16,767 + GFF6643 0.31 -0.9 16,768 - GFF6643 0.31 -0.3 16,768 - GFF6643 0.31 -0.1 16,821 + GFF6643 0.34 -2.0 16,821 + GFF6643 0.34 +0.0 16,821 + GFF6643 0.34 -0.5 16,821 + GFF6643 0.34 +0.2 16,822 - GFF6643 0.34 +0.3 16,822 - GFF6643 0.34 -0.5 17,067 + GFF6643 0.49 -0.4 17,068 - GFF6643 0.49 -1.1 17,068 - GFF6643 0.49 +0.4 17,068 - GFF6643 0.49 +0.9 17,068 - GFF6643 0.49 -0.8 17,172 + GFF6643 0.56 +0.3 17,172 + GFF6643 0.56 -0.5 17,173 - GFF6643 0.56 +0.7 17,173 - GFF6643 0.56 -0.0 17,173 - GFF6643 0.56 -0.5 17,173 - GFF6643 0.56 -1.8 17,173 - GFF6643 0.56 -0.3 17,223 + GFF6643 0.59 -0.4 17,223 + GFF6643 0.59 -0.7 17,223 + GFF6643 0.59 -0.6 17,223 + GFF6643 0.59 +0.0 17,223 + GFF6643 0.59 -1.8 17,224 - GFF6643 0.59 -0.7 17,224 - GFF6643 0.59 -1.3 17,286 + GFF6643 0.63 -0.3 17,286 + GFF6643 0.63 -0.4 17,286 + GFF6643 0.63 -0.6 17,286 + GFF6643 0.63 -1.0 17,286 + GFF6643 0.63 +0.7 17,287 - GFF6643 0.63 -1.1 17,287 - GFF6643 0.63 -0.2 17,287 - GFF6643 0.63 -0.7 17,287 - GFF6643 0.63 +0.0 17,287 - GFF6643 0.63 -1.8 17,676 + GFF6643 0.87 +0.5 17,676 + GFF6643 0.87 +0.8 17,676 + GFF6643 0.87 -0.3 17,676 + GFF6643 0.87 +0.3 17,677 - GFF6643 0.87 +1.3 17,677 - GFF6643 0.87 +0.6 17,677 - GFF6643 0.87 -0.8 17,677 - GFF6643 0.87 +0.1 17,677 - GFF6643 0.87 -1.3 17,677 - GFF6643 0.87 -0.9 17,677 - GFF6643 0.87 +0.3 17,685 + GFF6643 0.88 -1.0 17,685 + GFF6643 0.88 +0.6 17,685 + GFF6643 0.88 +0.6 17,685 + GFF6643 0.88 -1.2 17,685 + GFF6643 0.88 -0.4 17,686 - GFF6643 0.88 -0.4 17,686 - GFF6643 0.88 -0.3 17,686 - GFF6643 0.88 -0.7 17,686 - GFF6643 0.88 -0.7 17,686 - GFF6643 0.88 +0.3 17,706 + GFF6643 0.89 -0.6 17,706 + GFF6643 0.89 -0.0 17,707 - GFF6643 0.89 -2.6 17,707 - GFF6643 0.89 -0.5 17,707 - GFF6643 0.89 -0.7 17,707 - GFF6643 0.89 -0.1 17,707 - GFF6643 0.89 -0.3 17,941 - -1.9 17,941 - -0.9 17,942 + -0.8 17,943 - -0.7 17,945 - -0.5 17,965 + -1.3 17,966 - -1.2 18,091 - -0.6 18,261 + GFF6644 0.19 -0.5 18,261 + GFF6644 0.19 -0.5 18,261 + GFF6644 0.19 -0.1 18,261 + GFF6644 0.19 +0.1 18,261 + GFF6644 0.19 -0.6 18,262 - GFF6644 0.19 -0.8 18,262 - GFF6644 0.19 -0.5 18,262 - GFF6644 0.19 -0.5 18,262 - GFF6644 0.19 -0.3 18,262 - GFF6644 0.19 -1.0 18,351 + GFF6644 0.25 -0.8 18,351 + GFF6644 0.25 +0.9 18,351 + GFF6644 0.25 -0.3 18,351 + GFF6644 0.25 -0.3 18,351 + GFF6644 0.25 +2.9 18,352 - GFF6644 0.25 +0.1 18,352 - GFF6644 0.25 -0.5 18,413 + GFF6644 0.29 +0.8 18,413 + GFF6644 0.29 -0.5 18,413 + GFF6644 0.29 +0.0 18,414 - GFF6644 0.29 -0.3 18,414 - GFF6644 0.29 -0.3 18,477 + GFF6644 0.33 -0.6 18,478 - GFF6644 0.33 -0.9 18,478 - GFF6644 0.33 -0.7 18,478 - GFF6644 0.33 +0.3 18,495 + GFF6644 0.34 +0.8 18,495 + GFF6644 0.34 -2.0 18,495 + GFF6644 0.34 +0.3 18,517 + GFF6644 0.36 +0.3 18,517 + GFF6644 0.36 -1.3 18,517 + GFF6644 0.36 -0.7 18,517 + GFF6644 0.36 +0.4 18,517 + GFF6644 0.36 -0.8 18,517 + GFF6644 0.36 -0.3 18,518 - GFF6644 0.36 +0.1 18,518 - GFF6644 0.36 -1.0 18,518 - GFF6644 0.36 -0.7 18,518 - GFF6644 0.36 +0.7 18,518 - GFF6644 0.36 +1.6 18,518 - GFF6644 0.36 -0.4 18,544 + GFF6644 0.38 +0.1 18,544 + GFF6644 0.38 -0.4 18,544 + GFF6644 0.38 -1.4 18,544 + GFF6644 0.38 -1.3 18,544 + GFF6644 0.38 -0.5 18,544 + GFF6644 0.38 -0.3 18,544 + GFF6644 0.38 -0.6 18,545 - GFF6644 0.38 -0.3 18,545 - GFF6644 0.38 -0.3 18,669 + GFF6644 0.46 -2.3 18,669 + GFF6644 0.46 -0.9 18,840 + GFF6644 0.58 -0.8 18,841 - GFF6644 0.58 -0.2
Or see this region's nucleotide sequence