Strain Fitness in Variovorax sp. SCN45 around GFF6632

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
2,421	-		GFF6631	0.57	-2.4
2,421	-		GFF6631	0.57	-0.1
2,421	-		GFF6631	0.57	-0.5
2,421	-		GFF6631	0.57	+0.2
2,421	-		GFF6631	0.57	+0.1
2,421	-		GFF6631	0.57	+1.1
2,421	-		GFF6631	0.57	-0.4
2,421	-		GFF6631	0.57	-0.9
2,421	-		GFF6631	0.57	-1.1
2,421	-		GFF6631	0.57	-0.5
2,441	-		GFF6631	0.59	-0.8
2,449	+		GFF6631	0.60	-1.1
2,660	+		GFF6631	0.78	-0.3
2,661	-		GFF6631	0.78	-0.5
2,661	-		GFF6631	0.78	+0.0
2,661	-		GFF6631	0.78	-0.2
2,661	-		GFF6631	0.78	-1.0
2,923	+				-0.3
2,923	+				-0.1
2,923	+				+0.3
2,923	+				+0.2
2,924	-				+2.6
2,924	-				-1.8
2,924	-				+0.5
2,924	-				-0.0
2,924	-				+2.5
2,924	-				-0.3
2,924	-				+0.5
2,924	-				-0.9
2,924	-				+0.7
2,963	+				-0.4
2,963	+				-0.1
2,963	+				+0.5
2,964	-				-1.0
2,964	-				-0.0
2,964	-				-1.5
2,964	-				-0.5
2,966	+				+0.7
2,966	+				-0.8
2,966	+				-0.8
2,966	+				-0.1
2,966	+				-0.7
2,966	+				+0.1
2,966	+				-0.2
2,966	+				-0.2
2,966	+				-0.5
2,966	+				+0.4
2,966	+				-0.7
2,967	-				-0.0
2,967	-				-0.4
2,967	-				+1.2
2,967	-				+0.1
2,967	-				-1.0
2,967	-				+0.0
2,967	-				-0.4
2,967	-				-0.3
2,967	-				+1.0
2,967	-				+0.5
2,967	-				+0.1
2,967	-				+0.0
2,967	-				+1.3
2,967	-				-0.8
2,967	-				+0.4
2,967	-				+0.2
2,967	-				-1.7
2,967	-				-1.8
2,967	-				-0.7
2,967	-				-0.4
3,046	+				-1.1
3,046	+				-0.0
3,046	+				-1.4
3,046	+				-1.3
3,046	+				+0.3
3,046	+				-1.8
3,046	+				-0.9
3,047	-				+1.6
3,047	-				+0.0
3,047	-				-0.3
3,061	+				-0.7
3,062	-				+0.4
3,127	+				-0.2
3,127	+				+0.9
3,127	+				+0.1
3,127	+				-0.9
3,127	+				-0.3
3,128	-				+0.6
3,128	-				+0.6
3,128	-				-0.4
3,128	-				-0.9
3,128	-				-0.4
3,128	-				-0.5
3,128	-				-1.4
3,128	-				+0.5
3,128	-				-1.5
3,128	-				-1.1
3,186	+				-0.6
3,187	-				+0.7
3,187	-				+1.0
3,187	-				-1.4
3,367	-				-2.1
3,379	+				+0.3
3,396	-				+0.7
3,437	+				+0.3
3,437	+				+0.0
3,440	+				+0.3
3,441	-				-0.4
3,441	-				+0.4
3,441	-				-0.6
3,473	+				-0.3
3,473	+				-1.0
3,473	+				-0.0
3,473	+				-1.2
3,473	+				+0.1
3,474	-				-0.7
3,474	-				+0.7
3,474	-				+0.0
3,474	-				+1.0
3,474	-				-1.7
3,476	+				-0.4
3,476	+				-0.1
3,477	-				+0.2
3,477	-				+0.9
3,477	-				+0.0
3,514	+		GFF6632	0.11	-1.0
3,514	+		GFF6632	0.11	-0.3
3,514	+		GFF6632	0.11	-0.6
3,515	-		GFF6632	0.11	+0.6
3,515	-		GFF6632	0.11	+0.6
3,515	-		GFF6632	0.11	+0.1
3,515	-		GFF6632	0.11	-0.1
3,515	-		GFF6632	0.11	+0.0
3,531	-		GFF6632	0.13	-1.6
3,555	+		GFF6632	0.15	-0.1
3,556	-		GFF6632	0.15	-0.4
3,556	-		GFF6632	0.15	+0.5
3,567	+		GFF6632	0.17	+0.3
3,567	+		GFF6632	0.17	-0.7
3,568	-		GFF6632	0.17	+0.5
3,568	-		GFF6632	0.17	+0.2
3,625	+		GFF6632	0.23	-0.5
3,665	-		GFF6632	0.28	-0.4
3,665	-		GFF6632	0.28	+0.6
3,665	-		GFF6632	0.28	+0.8
3,670	-		GFF6632	0.29	-0.8
3,670	-		GFF6632	0.29	+2.5
3,670	-		GFF6632	0.29	+0.3
3,670	-		GFF6632	0.29	+0.3
3,670	-		GFF6632	0.29	-0.3
3,670	-		GFF6632	0.29	-0.1
3,673	-		GFF6632	0.29	-0.2
3,746	+		GFF6632	0.37	-0.1
3,746	+		GFF6632	0.37	+0.3
3,746	+		GFF6632	0.37	-1.3
3,746	+		GFF6632	0.37	+0.1
3,746	+		GFF6632	0.37	-0.7
3,746	+		GFF6632	0.37	-0.7
3,746	+		GFF6632	0.37	-0.4
3,746	+		GFF6632	0.37	-0.1
3,746	+		GFF6632	0.37	-0.7
3,746	+		GFF6632	0.37	-0.7
3,747	-		GFF6632	0.37	+0.1
3,747	-		GFF6632	0.37	-0.2
3,747	-		GFF6632	0.37	+0.8
3,747	-		GFF6632	0.37	-1.1
3,747	-		GFF6632	0.37	-0.9
3,788	+		GFF6632	0.42	+0.1
3,788	+		GFF6632	0.42	-0.2
3,788	+		GFF6632	0.42	-1.7
3,789	-		GFF6632	0.42	+1.1
3,789	-		GFF6632	0.42	+0.3
3,789	-		GFF6632	0.42	-0.6
3,824	-		GFF6632	0.46	+0.0
3,824	-		GFF6632	0.46	-2.5
3,859	+		GFF6632	0.50	-0.3
3,859	+		GFF6632	0.50	+0.1
3,860	-		GFF6632	0.50	+0.3
3,860	-		GFF6632	0.50	-0.7
3,860	-		GFF6632	0.50	-1.1
3,860	-		GFF6632	0.50	-0.4
3,869	+		GFF6632	0.51	+0.3
3,869	+		GFF6632	0.51	-2.3
3,869	+		GFF6632	0.51	+1.6
3,869	+		GFF6632	0.51	-0.6
3,870	-		GFF6632	0.51	+0.4
3,870	-		GFF6632	0.51	-0.5
3,870	-		GFF6632	0.51	-0.1
3,870	-		GFF6632	0.51	-0.2
3,870	-		GFF6632	0.51	+0.6
3,890	+		GFF6632	0.54	-0.1
3,891	-		GFF6632	0.54	+0.2
3,891	-		GFF6632	0.54	-0.1
3,891	-		GFF6632	0.54	-0.2
3,891	-		GFF6632	0.54	+0.0
3,894	+		GFF6632	0.54	+0.0
3,894	+		GFF6632	0.54	-0.1
3,895	-		GFF6632	0.54	-0.8
3,895	-		GFF6632	0.54	+0.0
3,901	-		GFF6632	0.55	+0.1
3,912	+		GFF6632	0.56	-2.2
3,912	+		GFF6632	0.56	-0.3
3,912	+		GFF6632	0.56	+0.7
3,913	-		GFF6632	0.56	+0.2
3,930	+		GFF6632	0.58	+1.0
3,931	-		GFF6632	0.58	-0.5
3,933	-		GFF6632	0.59	-0.3
4,015	-		GFF6632	0.68	+0.2
4,023	-		GFF6632	0.69	-0.7
4,023	-		GFF6632	0.69	+0.5
4,023	-		GFF6632	0.69	+1.1
4,023	-		GFF6632	0.69	+0.5
4,060	+		GFF6632	0.73	+0.3
4,088	+		GFF6632	0.76	+0.9
4,088	+		GFF6632	0.76	+0.0
4,088	+		GFF6632	0.76	+0.0
4,089	-		GFF6632	0.77	+0.2
4,092	+		GFF6632	0.77	-1.4
4,093	-		GFF6632	0.77	+0.9
4,108	-		GFF6632	0.79	+0.3
4,120	-		GFF6632	0.80	-0.2
4,137	+		GFF6632	0.82	+0.7
4,137	+		GFF6632	0.82	-0.3
4,137	+		GFF6632	0.82	+0.0
4,137	+		GFF6632	0.82	+0.1
4,137	+		GFF6632	0.82	+0.6
4,172	+		GFF6632	0.86	-0.5
4,197	+		GFF6632	0.89	-0.3
4,197	+		GFF6632	0.89	+0.6
4,198	-		GFF6632	0.89	-0.4
4,198	-		GFF6632	0.89	-0.4
4,198	-		GFF6632	0.89	-0.1
4,257	+				+0.4
4,307	+				-0.5
4,308	-				-0.3
4,308	-				-0.5
4,318	+				-1.5
4,318	+				-0.0
4,319	-				+0.9
4,404	+				-1.0
4,404	+				-0.1
4,405	-				+0.3
4,419	+				+0.3
4,419	+				-0.6
4,419	+				-0.5
4,419	+				-0.2
4,419	+				-2.0
4,419	+				-0.6
4,419	+				-0.1
4,419	+				+0.4
4,419	+				+0.9
4,419	+				-0.8
4,419	+				-1.0
4,419	+				-0.3
4,419	+				-0.5
4,419	+				+0.7
4,419	+				-0.8
4,419	+				+0.4
4,419	+				+1.1
4,419	+				-1.1
4,419	+				-0.5
4,419	+				+1.1
4,420	-				-0.8
4,420	-				+0.2
4,420	-				-1.1
4,420	-				-0.7
4,420	-				+0.1
4,420	-				-1.3
4,420	-				-0.2
4,420	-				+2.1
4,420	-				-1.0
4,420	-				+2.0
4,420	-				-0.6
4,420	-				-0.5
4,420	-				-0.1
4,420	-				-0.8
4,423	+				+0.3
4,423	+				-2.0
4,424	-				-0.6
4,451	+		GFF6633	0.11	-1.3
4,451	+		GFF6633	0.11	-0.4
4,451	+		GFF6633	0.11	-0.1
4,451	+		GFF6633	0.11	-0.7
4,451	+		GFF6633	0.11	-0.6
4,451	+		GFF6633	0.11	-1.3
4,451	+		GFF6633	0.11	+0.0
4,452	-		GFF6633	0.11	+2.1
4,452	-		GFF6633	0.11	-0.4
4,471	+		GFF6633	0.12	+0.3
4,471	+		GFF6633	0.12	+0.2
4,472	-		GFF6633	0.12	-0.5
4,496	+		GFF6633	0.14	+0.0
4,496	+		GFF6633	0.14	-0.5
4,496	+		GFF6633	0.14	+0.1
4,496	+		GFF6633	0.14	-0.3
4,496	+		GFF6633	0.14	-0.7
4,496	+		GFF6633	0.14	-0.3
4,497	-		GFF6633	0.14	-0.6
4,497	-		GFF6633	0.14	+0.3
4,497	-		GFF6633	0.14	+0.4
4,497	-		GFF6633	0.14	-0.1
4,593	+		GFF6633	0.22	-0.9
4,593	+		GFF6633	0.22	-1.8
4,593	+		GFF6633	0.22	-1.0
4,593	+		GFF6633	0.22	-0.2
4,593	+		GFF6633	0.22	+1.3
4,593	+		GFF6633	0.22	-1.0
4,593	+		GFF6633	0.22	+0.2
4,593	+		GFF6633	0.22	-0.5
4,593	+		GFF6633	0.22	-0.4
4,593	+		GFF6633	0.22	-0.1
4,593	+		GFF6633	0.22	+0.1
4,594	-		GFF6633	0.22	+1.5
4,594	-		GFF6633	0.22	-0.3
4,594	-		GFF6633	0.22	+0.9
4,594	-		GFF6633	0.22	-0.3
4,594	-		GFF6633	0.22	+0.1
4,594	-		GFF6633	0.22	-0.3
4,594	-		GFF6633	0.22	+0.9
4,594	-		GFF6633	0.22	+0.3
4,594	-		GFF6633	0.22	+0.3
4,596	+		GFF6633	0.22	-1.8
4,596	+		GFF6633	0.22	+1.3
4,596	+		GFF6633	0.22	+0.5
4,596	+		GFF6633	0.22	+0.8
4,596	+		GFF6633	0.22	-0.3
4,596	+		GFF6633	0.22	-0.7
4,596	+		GFF6633	0.22	-0.6
4,596	+		GFF6633	0.22	+0.1
4,596	+		GFF6633	0.22	-0.2
4,596	+		GFF6633	0.22	+0.3
4,596	+		GFF6633	0.22	-1.6
4,596	+		GFF6633	0.22	-0.3
4,596	+		GFF6633	0.22	+0.9
4,596	+		GFF6633	0.22	-0.6
4,596	+		GFF6633	0.22	-0.1
4,596	+		GFF6633	0.22	-0.7
4,596	+		GFF6633	0.22	-0.3
4,596	+		GFF6633	0.22	-0.7
4,596	+		GFF6633	0.22	-0.0
4,596	+		GFF6633	0.22	-0.5
4,596	+		GFF6633	0.22	-0.1
4,596	+		GFF6633	0.22	-0.1
4,597	-		GFF6633	0.22	+0.1
4,597	-		GFF6633	0.22	-1.1
4,597	-		GFF6633	0.22	-0.4
4,597	-		GFF6633	0.22	-0.9
4,597	-		GFF6633	0.22	-0.6
4,597	-		GFF6633	0.22	+0.1
4,597	-		GFF6633	0.22	+0.1
4,597	-		GFF6633	0.22	-0.4
4,597	-		GFF6633	0.22	+0.2
4,597	-		GFF6633	0.22	-1.3
4,597	-		GFF6633	0.22	-0.6
4,597	-		GFF6633	0.22	+1.1
4,597	-		GFF6633	0.22	-0.7
4,597	-		GFF6633	0.22	-0.2
4,597	-		GFF6633	0.22	-0.4
4,597	-		GFF6633	0.22	+1.1
4,597	-		GFF6633	0.22	+0.1
4,597	-		GFF6633	0.22	-0.3
4,668	+		GFF6633	0.28	-0.1
4,668	+		GFF6633	0.28	+0.1
4,668	+		GFF6633	0.28	-0.2
4,668	+		GFF6633	0.28	+0.4
4,668	+		GFF6633	0.28	-2.8
4,668	+		GFF6633	0.28	-0.3
4,669	-		GFF6633	0.28	+1.3
4,669	-		GFF6633	0.28	-1.6
4,680	+		GFF6633	0.29	-0.6
4,681	-		GFF6633	0.29	+0.4
4,681	-		GFF6633	0.29	+0.2
4,705	+		GFF6633	0.30	-1.7
4,705	+		GFF6633	0.30	-0.4
4,705	+		GFF6633	0.30	+0.5
4,705	+		GFF6633	0.30	+1.0
4,705	+		GFF6633	0.30	+0.3
4,706	-		GFF6633	0.31	+0.3
4,858	+		GFF6633	0.42	-0.1
4,858	+		GFF6633	0.42	+0.0
4,872	+		GFF6633	0.43	+0.5
4,872	+		GFF6633	0.43	-0.1
4,872	+		GFF6633	0.43	-0.4
4,872	+		GFF6633	0.43	+0.0
4,872	+		GFF6633	0.43	-0.2
4,872	+		GFF6633	0.43	-1.0
4,872	+		GFF6633	0.43	-0.8
4,872	+		GFF6633	0.43	-0.1
4,872	+		GFF6633	0.43	+0.5
4,872	+		GFF6633	0.43	-0.1
4,872	+		GFF6633	0.43	+0.0
4,872	+		GFF6633	0.43	+0.5
4,872	+		GFF6633	0.43	-1.0
4,872	-		GFF6633	0.43	+0.6
4,873	-		GFF6633	0.43	-0.8
4,873	-		GFF6633	0.43	+0.5
4,873	-		GFF6633	0.43	+0.6
4,873	-		GFF6633	0.43	+0.4
4,873	-		GFF6633	0.43	+1.3
4,873	-		GFF6633	0.43	-0.1
4,873	-		GFF6633	0.43	-0.6
4,873	-		GFF6633	0.43	-0.7
4,873	-		GFF6633	0.43	-1.3
4,873	-		GFF6633	0.43	-0.4
4,873	-		GFF6633	0.43	-0.7
4,873	-		GFF6633	0.43	+0.7
4,873	-		GFF6633	0.43	-0.7
4,873	-		GFF6633	0.43	-1.3
4,873	-		GFF6633	0.43	+0.1
4,873	-		GFF6633	0.43	+1.0
4,873	-		GFF6633	0.43	-0.4
5,047	+		GFF6633	0.57	-0.6
5,047	+		GFF6633	0.57	-0.4
5,048	-		GFF6633	0.57	-0.7
5,048	-		GFF6633	0.57	-0.3
5,056	+		GFF6633	0.58	+0.9
5,056	+		GFF6633	0.58	-0.7
5,056	+		GFF6633	0.58	-0.7
5,056	+		GFF6633	0.58	-0.7
5,057	-		GFF6633	0.58	-0.6
5,057	-		GFF6633	0.58	+1.1
5,057	-		GFF6633	0.58	+0.6
5,057	-		GFF6633	0.58	+0.4
5,076	+		GFF6633	0.59	-0.8
5,076	+		GFF6633	0.59	-0.7
5,076	+		GFF6633	0.59	+0.6
5,076	+		GFF6633	0.59	+0.9
5,076	+		GFF6633	0.59	+0.7
5,076	+		GFF6633	0.59	-0.7
5,077	-		GFF6633	0.59	+0.1
5,077	-		GFF6633	0.59	-0.2
5,077	-		GFF6633	0.59	-0.3
5,077	-		GFF6633	0.59	-0.0
5,077	-		GFF6633	0.59	-0.1
5,077	-		GFF6633	0.59	-0.2
5,128	+		GFF6633	0.63	-0.7
5,170	+		GFF6633	0.66	-1.4
5,170	+		GFF6633	0.66	-0.5
5,171	-		GFF6633	0.66	-0.4
5,171	-		GFF6633	0.66	-0.5
5,196	-		GFF6633	0.68	-1.4
5,196	-		GFF6633	0.68	-0.3
5,261	+		GFF6633	0.73	-0.7
5,261	+		GFF6633	0.73	+0.0
5,261	+		GFF6633	0.73	-1.8
5,261	+		GFF6633	0.73	-0.2
5,262	-		GFF6633	0.73	-0.2
5,262	-		GFF6633	0.73	-0.8
5,262	-		GFF6633	0.73	-0.3
5,280	+		GFF6633	0.75	+0.0
5,280	+		GFF6633	0.75	-1.0
5,281	-		GFF6633	0.75	+0.3
5,281	-		GFF6633	0.75	-0.6