Strain Fitness in Variovorax sp. SCN45 around GFF6415

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
88,060	+		GFF6413	0.42	+0.2
88,060	+		GFF6413	0.42	+0.1
88,060	+		GFF6413	0.42	+1.2
88,060	+		GFF6413	0.42	-0.1
88,061	-		GFF6413	0.42	-2.2
88,061	-		GFF6413	0.42	+0.2
88,061	-		GFF6413	0.42	-0.1
88,061	-		GFF6413	0.42	+0.5
88,061	-		GFF6413	0.42	+0.0
88,069	+		GFF6413	0.43	-0.8
88,069	+		GFF6413	0.43	-0.7
88,069	+		GFF6413	0.43	-1.0
88,069	+		GFF6413	0.43	-1.8
88,069	+		GFF6413	0.43	-0.7
88,069	+		GFF6413	0.43	+0.2
88,069	+		GFF6413	0.43	+0.8
88,069	+		GFF6413	0.43	-0.6
88,069	+		GFF6413	0.43	-0.9
88,070	-		GFF6413	0.43	-0.8
88,070	-		GFF6413	0.43	-1.2
88,070	-		GFF6413	0.43	-0.2
88,070	-		GFF6413	0.43	+0.2
88,070	-		GFF6413	0.43	+0.5
88,070	-		GFF6413	0.43	-0.1
88,070	-		GFF6413	0.43	+0.1
88,070	-		GFF6413	0.43	-0.0
88,070	-		GFF6413	0.43	-0.6
88,070	-		GFF6413	0.43	+0.4
88,070	-		GFF6413	0.43	+0.0
88,070	-		GFF6413	0.43	+1.3
88,070	-		GFF6413	0.43	+0.6
88,070	-		GFF6413	0.43	-0.5
88,070	-		GFF6413	0.43	-1.9
88,070	-		GFF6413	0.43	+0.2
88,195	+		GFF6413	0.56	-1.8
88,195	+		GFF6413	0.56	+0.1
88,195	+		GFF6413	0.56	+0.6
88,196	-		GFF6413	0.56	-0.1
88,196	-		GFF6413	0.56	-0.3
88,291	+		GFF6413	0.66	-0.1
88,292	-		GFF6413	0.66	+0.3
88,608	+				-0.4
88,608	+				+0.7
88,608	+				-0.1
88,608	+				-1.1
88,608	+				+0.5
88,608	+				-0.2
88,608	+				+0.5
88,608	+				-0.3
88,609	-				+0.4
88,609	-				+0.2
88,609	-				+0.2
88,609	-				+1.1
88,609	-				-1.2
88,609	-				+0.0
88,629	+				+0.5
88,629	+				+0.8
88,629	+				-0.1
88,723	+				+0.5
88,723	+				-0.2
88,724	-				-1.6
88,724	-				-0.7
88,726	-				-0.1
88,726	-				-0.5
88,727	+				-0.3
88,727	+				-0.5
88,728	-				+0.0
88,728	-				-0.6
88,791	-		GFF6414	0.19	-0.5
88,976	-				+1.5
88,996	-				-0.1
89,097	+				+0.4
89,097	+				+0.8
89,097	+				-0.3
89,097	+				-0.8
89,097	+				+0.8
89,097	+				+1.0
89,098	-				-2.3
89,298	+		GFF6415	0.15	-0.5
89,298	+		GFF6415	0.15	+0.2
89,299	-		GFF6415	0.15	+0.3
89,437	-		GFF6415	0.23	+0.2
89,466	+		GFF6415	0.24	-0.1
89,466	+		GFF6415	0.24	-0.0
89,467	-		GFF6415	0.24	-0.1
89,467	-		GFF6415	0.24	+1.6
89,467	-		GFF6415	0.24	-1.2
89,595	+		GFF6415	0.31	-1.5
89,595	+		GFF6415	0.31	-0.9
89,596	-		GFF6415	0.31	-0.7
89,596	-		GFF6415	0.31	+0.2
89,596	-		GFF6415	0.31	+0.1
89,596	-		GFF6415	0.31	-0.8
89,596	-		GFF6415	0.31	-0.3
89,596	-		GFF6415	0.31	-1.0
89,596	-		GFF6415	0.31	+2.8
89,679	+		GFF6415	0.36	-0.5
89,679	+		GFF6415	0.36	+0.8
89,679	+		GFF6415	0.36	-0.0
89,679	+		GFF6415	0.36	-0.6
89,679	+		GFF6415	0.36	+0.4
89,679	+		GFF6415	0.36	-0.3
89,679	+		GFF6415	0.36	-1.1
89,679	+		GFF6415	0.36	-0.2
89,679	+		GFF6415	0.36	+0.2
89,679	+		GFF6415	0.36	+0.3
89,680	-		GFF6415	0.36	-0.4
89,680	-		GFF6415	0.36	-0.7
89,680	-		GFF6415	0.36	-0.6
89,680	-		GFF6415	0.36	-0.5
89,752	-		GFF6415	0.40	+0.4
89,752	-		GFF6415	0.40	+0.2
89,913	+		GFF6415	0.49	+0.4
89,913	+		GFF6415	0.49	+0.1
89,913	+		GFF6415	0.49	-1.0
89,913	+		GFF6415	0.49	+1.1
89,913	+		GFF6415	0.49	+0.2
89,913	+		GFF6415	0.49	-0.5
89,913	+		GFF6415	0.49	-1.0
89,913	+		GFF6415	0.49	+1.4
89,914	-		GFF6415	0.49	-1.7
89,914	-		GFF6415	0.49	-0.1
89,914	-		GFF6415	0.49	-0.5
89,914	-		GFF6415	0.49	-1.3
89,914	-		GFF6415	0.49	+0.4
89,916	+		GFF6415	0.49	+0.4
89,917	-		GFF6415	0.50	+0.2
89,917	-		GFF6415	0.50	-0.2
89,973	+		GFF6415	0.53	+0.8
89,973	+		GFF6415	0.53	-0.4
89,973	+		GFF6415	0.53	-0.9
89,973	+		GFF6415	0.53	-0.5
89,974	-		GFF6415	0.53	-1.3
89,974	-		GFF6415	0.53	+0.2
90,120	+		GFF6415	0.61	-0.5
90,120	+		GFF6415	0.61	-0.5
90,120	+		GFF6415	0.61	+0.3
90,120	+		GFF6415	0.61	+0.4
90,121	-		GFF6415	0.61	-0.3
90,121	-		GFF6415	0.61	+0.1
90,121	-		GFF6415	0.61	+0.2
90,121	-		GFF6415	0.61	-0.1
90,121	-		GFF6415	0.61	-0.7
90,225	+		GFF6415	0.67	-0.8
90,225	+		GFF6415	0.67	+0.0
90,225	+		GFF6415	0.67	+0.6
90,225	+		GFF6415	0.67	-0.8
90,225	+		GFF6415	0.67	-1.4
90,225	+		GFF6415	0.67	+0.2
90,225	+		GFF6415	0.67	-0.0
90,226	-		GFF6415	0.67	-1.0
90,226	-		GFF6415	0.67	-0.4
90,226	-		GFF6415	0.67	+0.2
90,226	-		GFF6415	0.67	+1.1
90,226	-		GFF6415	0.67	-0.6
90,226	-		GFF6415	0.67	-1.5
90,226	-		GFF6415	0.67	-2.4
90,226	-		GFF6415	0.67	-0.2
90,335	+		GFF6415	0.73	-2.0
90,335	+		GFF6415	0.73	+0.1
90,335	+		GFF6415	0.73	+0.2
90,335	+		GFF6415	0.73	+0.6
90,335	+		GFF6415	0.73	+1.6
90,335	+		GFF6415	0.73	-0.2
90,335	+		GFF6415	0.73	-0.6
90,335	+		GFF6415	0.73	+0.5
90,335	+		GFF6415	0.73	+1.8
90,336	-		GFF6415	0.73	-0.5
90,336	-		GFF6415	0.73	-1.2
90,336	-		GFF6415	0.73	-0.5
90,336	-		GFF6415	0.73	+0.7
90,336	-		GFF6415	0.73	-0.5
90,336	-		GFF6415	0.73	-0.7
90,336	-		GFF6415	0.73	+0.7
90,666	+				-0.2
90,666	+				+0.2
90,666	+				-1.0
90,666	+				+0.1
90,666	+				-1.0
90,666	+				+0.4
90,667	-				+0.2
90,667	-				-0.2
90,667	-				-0.8
90,667	-				-0.1
90,667	-				+0.1
90,667	-				+0.5
90,667	-				-0.3
90,667	-				+0.1
90,667	-				-0.9
90,667	-				-1.1
90,774	+				-0.7
90,775	-				-1.4
91,054	+		GFF6416	0.24	-0.2
91,054	+		GFF6416	0.24	+1.1
91,055	-		GFF6416	0.24	-0.7
91,055	-		GFF6416	0.24	-1.0
91,141	+		GFF6416	0.34	-0.6
91,141	+		GFF6416	0.34	+0.5
91,141	+		GFF6416	0.34	-0.5
91,141	+		GFF6416	0.34	-0.3
91,141	+		GFF6416	0.34	-0.6
91,142	-		GFF6416	0.34	+0.1
91,142	-		GFF6416	0.34	+0.8
91,142	-		GFF6416	0.34	-0.2
91,142	-		GFF6416	0.34	+1.2
91,142	-		GFF6416	0.34	-0.8
91,142	-		GFF6416	0.34	-0.2
91,603	+		GFF6416	0.87	-0.6
91,604	-		GFF6416	0.87	+0.2