Strain Fitness in Variovorax sp. SCN45 around GFF6398

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6397 and GFF6398 are separated by 6 nucleotidesGFF6398 and GFF6399 are separated by 167 nucleotides GFF6397 - LysR family transcriptional regulator PA2758, at 71,659 to 72,585 GFF6397 GFF6398 - SH3, type 3, at 72,592 to 73,257 GFF6398 GFF6399 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain, at 73,425 to 74,477 GFF6399 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1 2 3at 71.634 kb on - strandat 71.644 kb on - strandat 72.013 kb on + strand, within GFF6397at 72.013 kb on + strand, within GFF6397at 72.014 kb on - strand, within GFF6397at 72.902 kb on + strand, within GFF6398at 72.902 kb on + strand, within GFF6398at 72.903 kb on - strand, within GFF6398at 72.903 kb on - strand, within GFF6398at 72.903 kb on - strand, within GFF6398at 72.903 kb on - strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.905 kb on + strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.906 kb on - strand, within GFF6398at 72.917 kb on + strand, within GFF6398at 72.917 kb on + strand, within GFF6398at 72.918 kb on - strand, within GFF6398at 72.918 kb on - strand, within GFF6398at 72.918 kb on - strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.965 kb on + strand, within GFF6398at 72.966 kb on - strand, within GFF6398at 72.966 kb on - strand, within GFF6398at 72.966 kb on - strand, within GFF6398at 72.966 kb on - strand, within GFF6398at 72.966 kb on - strand, within GFF6398at 72.966 kb on - strand, within GFF6398at 72.966 kb on - strand, within GFF6398at 72.966 kb on - strand, within GFF6398at 72.966 kb on - strand, within GFF6398at 72.966 kb on - strand, within GFF6398at 72.995 kb on + strand, within GFF6398at 72.995 kb on + strand, within GFF6398at 72.996 kb on - strand, within GFF6398at 72.996 kb on - strand, within GFF6398at 72.996 kb on - strand, within GFF6398at 73.001 kb on + strand, within GFF6398at 73.001 kb on + strand, within GFF6398at 73.001 kb on + strand, within GFF6398at 73.001 kb on + strand, within GFF6398at 73.001 kb on + strand, within GFF6398at 73.001 kb on + strand, within GFF6398at 73.001 kb on + strand, within GFF6398at 73.001 kb on + strand, within GFF6398at 73.002 kb on - strand, within GFF6398at 73.002 kb on - strand, within GFF6398at 73.002 kb on - strand, within GFF6398at 73.002 kb on - strand, within GFF6398at 73.002 kb on - strand, within GFF6398at 73.067 kb on + strand, within GFF6398at 73.068 kb on - strand, within GFF6398at 73.207 kb on + strandat 73.207 kb on + strandat 73.207 kb on + strandat 73.207 kb on + strandat 73.208 kb on - strandat 73.208 kb on - strandat 73.281 kb on + strandat 73.281 kb on + strandat 73.281 kb on + strandat 73.282 kb on - strandat 73.282 kb on - strandat 73.282 kb on - strandat 73.282 kb on - strandat 73.282 kb on - strandat 73.426 kb on + strandat 73.426 kb on + strandat 73.426 kb on + strandat 73.426 kb on + strandat 73.426 kb on + strandat 73.427 kb on - strandat 73.427 kb on - strandat 73.427 kb on - strandat 73.427 kb on - strandat 73.427 kb on - strandat 73.427 kb on - strandat 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.876 kb on + strand, within GFF6399at 73.876 kb on + strand, within GFF6399at 73.876 kb on + strand, within GFF6399at 73.876 kb on + strand, within GFF6399at 73.876 kb on + strand, within GFF6399at 73.877 kb on - strand, within GFF6399at 73.877 kb on - strand, within GFF6399at 73.877 kb on - strand, within GFF6399at 73.877 kb on - strand, within GFF6399at 73.877 kb on - strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.984 kb on + strand, within GFF6399at 73.984 kb on + strand, within GFF6399at 73.984 kb on + strand, within GFF6399at 73.985 kb on - strand, within GFF6399at 73.985 kb on - strand, within GFF6399at 73.985 kb on - strand, within GFF6399at 73.985 kb on - strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.254 kb on + strand, within GFF6399at 74.255 kb on - strand, within GFF6399at 74.255 kb on - strand, within GFF6399at 74.255 kb on - strand, within GFF6399at 74.255 kb on - strand, within GFF6399at 74.255 kb on - strand, within GFF6399

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
71,634 - +2.3
71,644 - +1.1
72,013 + GFF6397 0.38 -0.8
72,013 + GFF6397 0.38 +0.7
72,014 - GFF6397 0.38 +0.6
72,902 + GFF6398 0.47 -0.4
72,902 + GFF6398 0.47 +0.1
72,903 - GFF6398 0.47 -0.2
72,903 - GFF6398 0.47 -0.2
72,903 - GFF6398 0.47 +1.0
72,903 - GFF6398 0.47 -0.3
72,905 + GFF6398 0.47 +0.6
72,905 + GFF6398 0.47 -1.0
72,905 + GFF6398 0.47 +2.1
72,905 + GFF6398 0.47 -0.3
72,905 + GFF6398 0.47 -0.7
72,905 + GFF6398 0.47 +0.8
72,905 + GFF6398 0.47 +0.8
72,905 + GFF6398 0.47 +0.2
72,905 + GFF6398 0.47 +0.1
72,905 + GFF6398 0.47 -0.4
72,905 + GFF6398 0.47 +0.2
72,905 + GFF6398 0.47 +0.4
72,906 - GFF6398 0.47 -0.9
72,906 - GFF6398 0.47 -0.1
72,906 - GFF6398 0.47 -0.4
72,906 - GFF6398 0.47 -1.0
72,906 - GFF6398 0.47 -0.8
72,906 - GFF6398 0.47 +1.6
72,906 - GFF6398 0.47 -0.4
72,906 - GFF6398 0.47 -1.7
72,906 - GFF6398 0.47 -0.6
72,906 - GFF6398 0.47 -0.4
72,906 - GFF6398 0.47 +1.5
72,906 - GFF6398 0.47 -0.4
72,906 - GFF6398 0.47 -0.2
72,906 - GFF6398 0.47 +0.2
72,906 - GFF6398 0.47 +0.8
72,906 - GFF6398 0.47 +0.2
72,906 - GFF6398 0.47 +0.2
72,906 - GFF6398 0.47 +0.3
72,906 - GFF6398 0.47 +0.8
72,906 - GFF6398 0.47 +0.2
72,906 - GFF6398 0.47 -0.1
72,906 - GFF6398 0.47 +0.8
72,917 + GFF6398 0.49 +0.0
72,917 + GFF6398 0.49 -0.8
72,918 - GFF6398 0.49 +0.1
72,918 - GFF6398 0.49 +0.6
72,918 - GFF6398 0.49 +0.3
72,965 + GFF6398 0.56 -0.8
72,965 + GFF6398 0.56 -1.9
72,965 + GFF6398 0.56 -2.0
72,965 + GFF6398 0.56 -0.8
72,965 + GFF6398 0.56 +0.1
72,965 + GFF6398 0.56 -0.2
72,965 + GFF6398 0.56 -0.2
72,965 + GFF6398 0.56 +0.8
72,965 + GFF6398 0.56 +0.5
72,965 + GFF6398 0.56 +0.5
72,965 + GFF6398 0.56 +0.4
72,965 + GFF6398 0.56 -0.3
72,965 + GFF6398 0.56 -1.1
72,965 + GFF6398 0.56 +0.2
72,966 - GFF6398 0.56 -0.0
72,966 - GFF6398 0.56 -0.2
72,966 - GFF6398 0.56 -0.4
72,966 - GFF6398 0.56 -0.1
72,966 - GFF6398 0.56 +0.9
72,966 - GFF6398 0.56 -0.7
72,966 - GFF6398 0.56 +0.2
72,966 - GFF6398 0.56 +1.8
72,966 - GFF6398 0.56 -0.2
72,966 - GFF6398 0.56 -0.3
72,995 + GFF6398 0.61 -0.6
72,995 + GFF6398 0.61 +1.2
72,996 - GFF6398 0.61 -0.4
72,996 - GFF6398 0.61 -0.9
72,996 - GFF6398 0.61 +0.8
73,001 + GFF6398 0.61 -0.9
73,001 + GFF6398 0.61 -1.4
73,001 + GFF6398 0.61 -0.3
73,001 + GFF6398 0.61 +0.2
73,001 + GFF6398 0.61 -1.6
73,001 + GFF6398 0.61 +0.3
73,001 + GFF6398 0.61 -0.3
73,001 + GFF6398 0.61 -0.4
73,002 - GFF6398 0.62 -1.3
73,002 - GFF6398 0.62 +0.4
73,002 - GFF6398 0.62 +0.9
73,002 - GFF6398 0.62 +0.6
73,002 - GFF6398 0.62 +1.2
73,067 + GFF6398 0.71 +0.2
73,068 - GFF6398 0.71 +0.4
73,207 + -0.4
73,207 + +0.5
73,207 + -0.7
73,207 + +0.2
73,208 - +0.5
73,208 - -0.2
73,281 + +0.0
73,281 + -0.2
73,281 + +0.8
73,282 - -0.1
73,282 - +0.5
73,282 - -0.3
73,282 - -1.4
73,282 - -0.2
73,426 + +0.1
73,426 + -1.2
73,426 + +0.1
73,426 + +0.5
73,426 + +1.0
73,427 - -1.6
73,427 - +1.1
73,427 - -0.6
73,427 - +0.8
73,427 - -0.9
73,427 - -0.3
73,666 + GFF6399 0.23 -0.3
73,666 + GFF6399 0.23 -0.1
73,666 + GFF6399 0.23 -0.6
73,666 + GFF6399 0.23 +0.7
73,666 + GFF6399 0.23 +0.3
73,666 + GFF6399 0.23 -0.3
73,666 + GFF6399 0.23 -0.5
73,666 + GFF6399 0.23 -0.1
73,666 + GFF6399 0.23 -0.2
73,666 + GFF6399 0.23 +0.2
73,666 + GFF6399 0.23 +0.1
73,666 + GFF6399 0.23 -0.7
73,666 + GFF6399 0.23 +0.8
73,666 + GFF6399 0.23 +0.1
73,666 + GFF6399 0.23 +0.0
73,666 + GFF6399 0.23 +1.5
73,666 + GFF6399 0.23 +0.8
73,666 + GFF6399 0.23 -0.0
73,666 + GFF6399 0.23 -0.1
73,667 - GFF6399 0.23 -0.3
73,667 - GFF6399 0.23 +0.2
73,667 - GFF6399 0.23 +0.5
73,667 - GFF6399 0.23 +0.9
73,667 - GFF6399 0.23 -0.2
73,667 - GFF6399 0.23 +1.0
73,667 - GFF6399 0.23 -1.0
73,667 - GFF6399 0.23 -0.9
73,667 - GFF6399 0.23 +0.6
73,667 - GFF6399 0.23 +2.1
73,667 - GFF6399 0.23 -0.1
73,667 - GFF6399 0.23 -0.4
73,667 - GFF6399 0.23 -0.2
73,667 - GFF6399 0.23 -0.2
73,667 - GFF6399 0.23 -0.9
73,667 - GFF6399 0.23 -0.2
73,667 - GFF6399 0.23 -0.5
73,667 - GFF6399 0.23 +0.7
73,667 - GFF6399 0.23 +0.1
73,667 - GFF6399 0.23 +0.9
73,667 - GFF6399 0.23 +0.1
73,667 - GFF6399 0.23 +0.0
73,667 - GFF6399 0.23 -0.1
73,667 - GFF6399 0.23 +0.1
73,667 - GFF6399 0.23 -0.2
73,667 - GFF6399 0.23 -0.2
73,667 - GFF6399 0.23 -0.3
73,667 - GFF6399 0.23 -1.0
73,667 - GFF6399 0.23 +0.3
73,667 - GFF6399 0.23 -0.8
73,702 + GFF6399 0.26 -0.1
73,702 + GFF6399 0.26 +0.5
73,702 + GFF6399 0.26 +1.2
73,702 + GFF6399 0.26 -1.3
73,702 + GFF6399 0.26 +0.8
73,702 + GFF6399 0.26 -0.4
73,702 + GFF6399 0.26 +0.1
73,702 + GFF6399 0.26 +2.4
73,703 - GFF6399 0.26 -0.8
73,703 - GFF6399 0.26 -0.2
73,703 - GFF6399 0.26 -0.6
73,703 - GFF6399 0.26 +0.2
73,703 - GFF6399 0.26 -1.0
73,703 - GFF6399 0.26 +2.8
73,703 - GFF6399 0.26 +1.0
73,703 - GFF6399 0.26 +0.2
73,876 + GFF6399 0.43 +0.5
73,876 + GFF6399 0.43 -0.1
73,876 + GFF6399 0.43 -0.2
73,876 + GFF6399 0.43 +0.5
73,876 + GFF6399 0.43 +0.6
73,877 - GFF6399 0.43 +0.8
73,877 - GFF6399 0.43 +0.2
73,877 - GFF6399 0.43 +0.1
73,877 - GFF6399 0.43 -0.3
73,877 - GFF6399 0.43 +0.2
73,981 + GFF6399 0.53 +0.5
73,981 + GFF6399 0.53 +1.4
73,981 + GFF6399 0.53 -1.2
73,981 + GFF6399 0.53 -0.5
73,981 + GFF6399 0.53 -0.3
73,981 + GFF6399 0.53 +0.8
73,981 + GFF6399 0.53 +0.6
73,981 + GFF6399 0.53 -0.7
73,981 + GFF6399 0.53 -0.5
73,981 + GFF6399 0.53 -1.9
73,982 - GFF6399 0.53 +2.2
73,982 - GFF6399 0.53 -1.2
73,982 - GFF6399 0.53 +0.3
73,982 - GFF6399 0.53 +0.4
73,982 - GFF6399 0.53 -0.2
73,982 - GFF6399 0.53 +0.4
73,982 - GFF6399 0.53 -0.4
73,982 - GFF6399 0.53 +0.4
73,982 - GFF6399 0.53 -0.2
73,984 + GFF6399 0.53 -0.4
73,984 + GFF6399 0.53 -0.8
73,984 + GFF6399 0.53 -0.6
73,985 - GFF6399 0.53 -0.2
73,985 - GFF6399 0.53 -0.0
73,985 - GFF6399 0.53 +0.7
73,985 - GFF6399 0.53 +0.6
74,185 + GFF6399 0.72 +0.2
74,185 + GFF6399 0.72 +0.8
74,185 + GFF6399 0.72 -0.4
74,185 + GFF6399 0.72 -0.3
74,185 + GFF6399 0.72 +0.1
74,185 + GFF6399 0.72 +0.4
74,185 + GFF6399 0.72 -1.2
74,185 + GFF6399 0.72 -0.5
74,185 + GFF6399 0.72 +0.8
74,186 - GFF6399 0.72 -0.5
74,186 - GFF6399 0.72 +0.4
74,186 - GFF6399 0.72 -0.9
74,186 - GFF6399 0.72 -0.2
74,186 - GFF6399 0.72 +0.3
74,186 - GFF6399 0.72 -0.3
74,254 + GFF6399 0.79 +1.1
74,255 - GFF6399 0.79 -1.3
74,255 - GFF6399 0.79 -0.6
74,255 - GFF6399 0.79 -0.5
74,255 - GFF6399 0.79 -0.5
74,255 - GFF6399 0.79 -0.2

Or see this region's nucleotide sequence