Strain Fitness in Variovorax sp. SCN45 around GFF6209

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
116,025	+		GFF6208	0.48	-1.6
116,025	+		GFF6208	0.48	+2.1
116,025	+		GFF6208	0.48	-0.6
116,025	+		GFF6208	0.48	-0.1
116,026	-		GFF6208	0.48	+0.1
116,026	-		GFF6208	0.48	-0.5
116,166	+		GFF6208	0.57	-0.0
116,166	+		GFF6208	0.57	+0.5
116,373	+		GFF6208	0.71	+1.4
116,374	-		GFF6208	0.71	-0.3
116,374	-		GFF6208	0.71	+0.1
116,607	+		GFF6208	0.87	+3.0
116,607	+		GFF6208	0.87	-0.3
116,608	-		GFF6208	0.87	+0.1
116,655	+		GFF6208	0.90	-0.2
116,655	+		GFF6208	0.90	-0.6
116,655	+		GFF6208	0.90	-0.8
116,655	+		GFF6208	0.90	+0.5
116,656	-		GFF6208	0.90	+0.9
116,656	-		GFF6208	0.90	-0.4
116,656	-		GFF6208	0.90	-0.3
116,656	-		GFF6208	0.90	+0.7
116,716	-				-0.0
116,932	+				+0.3
116,932	+				+0.9
116,933	-				+0.8
116,933	-				-0.1
116,933	-				-0.8
116,933	-				-0.4
116,934	+				+0.3
116,934	+				+0.2
116,935	-				-0.9
116,940	+				+0.1
116,941	-				-0.8
116,941	-				-0.4
117,241	+		GFF6209	0.33	-1.2
117,241	+		GFF6209	0.33	+0.2
117,242	-		GFF6209	0.33	-1.1
117,242	-		GFF6209	0.33	-0.6
117,368	+		GFF6209	0.50	-0.8
117,818	+		GFF6210	0.10	+0.9
117,818	+		GFF6210	0.10	-0.9
117,819	-		GFF6210	0.10	-0.2
117,819	-		GFF6210	0.10	-0.4
117,819	-		GFF6210	0.10	-1.6
117,819	-		GFF6210	0.10	-0.0
117,819	-		GFF6210	0.10	-1.4
117,883	+		GFF6210	0.18	-0.6
117,883	+		GFF6210	0.18	+0.6
117,883	+		GFF6210	0.18	-1.1
117,883	+		GFF6210	0.18	+1.4
117,883	+		GFF6210	0.18	-0.5
117,884	-		GFF6210	0.18	-0.2
117,884	-		GFF6210	0.18	-0.2
118,013	+		GFF6210	0.35	+0.3
118,014	-		GFF6210	0.35	-0.5
118,014	-		GFF6210	0.35	-0.2
118,014	-		GFF6210	0.35	-0.6
118,100	+		GFF6210	0.46	+0.1
118,101	-		GFF6210	0.46	-0.1
118,101	-		GFF6210	0.46	+1.7
118,101	-		GFF6210	0.46	-0.7
118,101	-		GFF6210	0.46	-0.0
118,236	+		GFF6210	0.63	+0.2
118,236	+		GFF6210	0.63	-1.3
118,236	+		GFF6210	0.63	-0.1
118,236	+		GFF6210	0.63	-0.0
118,238	+		GFF6210	0.63	+1.1
118,238	+		GFF6210	0.63	+0.0
118,238	+		GFF6210	0.63	-0.4
118,238	+		GFF6210	0.63	+0.7
118,238	+		GFF6210	0.63	+1.4
118,239	-		GFF6210	0.63	+1.0
118,239	-		GFF6210	0.63	+0.3
118,239	-		GFF6210	0.63	+0.7
118,239	-		GFF6210	0.63	+0.1
118,239	-		GFF6210	0.63	+2.0
118,239	-		GFF6210	0.63	-1.6
118,239	-		GFF6210	0.63	-0.5
118,239	-		GFF6210	0.63	-0.1
118,564	+				-0.6
118,564	+				-1.2
118,564	+				+1.2
118,564	+				+0.8
118,565	-				-0.7
118,565	-				+0.5
118,565	-				-0.2
118,565	-				-0.8
118,565	-				-0.3
118,581	+				+0.5
118,581	+				-1.2
118,581	+				-0.2
118,581	+				-0.5
118,582	-				-0.8
118,582	-				+0.6
118,582	-				+0.2
118,602	+				+1.1
118,602	+				-1.0
118,602	+				-0.1
118,602	+				-1.2
118,603	-				+1.6
118,603	-				-0.4
118,603	-				-1.2
118,603	-				-0.8
118,603	-				-1.0
118,603	-				+0.3
118,641	+		GFF6211	0.12	-0.8