Strain Fitness in Variovorax sp. SCN45 around GFF6172

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6171 and GFF6172 are separated by 82 nucleotidesGFF6172 and GFF6173 overlap by 1 nucleotides GFF6171 - Na(+) H(+) antiporter subunit D, at 74,580 to 76,298 GFF6171 GFF6172 - Na(+) H(+) antiporter subunit C, at 76,381 to 76,731 GFF6172 GFF6173 - Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B, at 76,731 to 79,679 GFF6173 Position (kb) 76 77Strain fitness (log2 ratio) -2 -1 0 1at 75.472 kb on + strand, within GFF6171at 75.472 kb on + strand, within GFF6171at 75.472 kb on + strand, within GFF6171at 75.472 kb on + strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.532 kb on + strand, within GFF6171at 75.532 kb on + strand, within GFF6171at 75.532 kb on + strand, within GFF6171at 75.681 kb on - strand, within GFF6171at 75.681 kb on - strand, within GFF6171at 75.694 kb on + strand, within GFF6171at 75.695 kb on - strand, within GFF6171at 75.695 kb on - strand, within GFF6171at 75.695 kb on - strand, within GFF6171at 75.751 kb on + strand, within GFF6171at 75.751 kb on + strand, within GFF6171at 75.751 kb on + strand, within GFF6171at 75.752 kb on - strand, within GFF6171at 75.752 kb on - strand, within GFF6171at 75.752 kb on - strand, within GFF6171at 75.752 kb on - strand, within GFF6171at 75.804 kb on + strand, within GFF6171at 75.805 kb on + strand, within GFF6171at 75.806 kb on - strand, within GFF6171at 75.946 kb on + strand, within GFF6171at 75.946 kb on + strand, within GFF6171at 75.946 kb on + strand, within GFF6171at 75.946 kb on + strand, within GFF6171at 75.946 kb on + strand, within GFF6171at 75.947 kb on - strand, within GFF6171at 75.947 kb on - strand, within GFF6171at 75.947 kb on - strand, within GFF6171at 75.947 kb on - strand, within GFF6171at 75.947 kb on - strand, within GFF6171at 76.054 kb on + strand, within GFF6171at 76.054 kb on + strand, within GFF6171at 76.055 kb on - strand, within GFF6171at 76.055 kb on - strand, within GFF6171at 76.623 kb on - strand, within GFF6172at 76.655 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.679 kb on + strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.680 kb on - strand, within GFF6172at 76.727 kb on + strandat 76.811 kb on + strandat 77.038 kb on + strand, within GFF6173at 77.038 kb on + strand, within GFF6173at 77.038 kb on + strand, within GFF6173at 77.038 kb on + strand, within GFF6173at 77.039 kb on - strand, within GFF6173at 77.164 kb on + strand, within GFF6173at 77.164 kb on + strand, within GFF6173at 77.164 kb on + strand, within GFF6173at 77.164 kb on + strand, within GFF6173at 77.164 kb on + strand, within GFF6173at 77.227 kb on + strand, within GFF6173at 77.228 kb on - strand, within GFF6173at 77.228 kb on - strand, within GFF6173at 77.356 kb on + strand, within GFF6173at 77.356 kb on + strand, within GFF6173at 77.356 kb on + strand, within GFF6173at 77.356 kb on + strand, within GFF6173at 77.356 kb on + strand, within GFF6173at 77.357 kb on - strand, within GFF6173at 77.357 kb on - strand, within GFF6173at 77.357 kb on - strand, within GFF6173at 77.357 kb on - strand, within GFF6173at 77.357 kb on - strand, within GFF6173at 77.357 kb on - strand, within GFF6173at 77.357 kb on - strand, within GFF6173

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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75,472 + GFF6171 0.52 -0.3
75,472 + GFF6171 0.52 -0.9
75,472 + GFF6171 0.52 -0.7
75,472 + GFF6171 0.52 +0.0
75,473 - GFF6171 0.52 -0.8
75,473 - GFF6171 0.52 +0.2
75,473 - GFF6171 0.52 +1.1
75,473 - GFF6171 0.52 +0.7
75,473 - GFF6171 0.52 -1.2
75,532 + GFF6171 0.55 +0.6
75,532 + GFF6171 0.55 +0.6
75,532 + GFF6171 0.55 -2.0
75,681 - GFF6171 0.64 -0.1
75,681 - GFF6171 0.64 -0.7
75,694 + GFF6171 0.65 -0.5
75,695 - GFF6171 0.65 -0.5
75,695 - GFF6171 0.65 +0.8
75,695 - GFF6171 0.65 -1.0
75,751 + GFF6171 0.68 -0.3
75,751 + GFF6171 0.68 -0.6
75,751 + GFF6171 0.68 -0.0
75,752 - GFF6171 0.68 +0.3
75,752 - GFF6171 0.68 -0.9
75,752 - GFF6171 0.68 -1.2
75,752 - GFF6171 0.68 -0.5
75,804 + GFF6171 0.71 +0.2
75,805 + GFF6171 0.71 +0.2
75,806 - GFF6171 0.71 -0.6
75,946 + GFF6171 0.79 -0.3
75,946 + GFF6171 0.79 -0.6
75,946 + GFF6171 0.79 -0.0
75,946 + GFF6171 0.79 -0.3
75,946 + GFF6171 0.79 +0.1
75,947 - GFF6171 0.80 -1.8
75,947 - GFF6171 0.80 +1.4
75,947 - GFF6171 0.80 +0.3
75,947 - GFF6171 0.80 -0.9
75,947 - GFF6171 0.80 -0.9
76,054 + GFF6171 0.86 -1.0
76,054 + GFF6171 0.86 +0.4
76,055 - GFF6171 0.86 -1.0
76,055 - GFF6171 0.86 -0.0
76,623 - GFF6172 0.69 +0.2
76,655 + GFF6172 0.78 +0.3
76,679 + GFF6172 0.85 -0.6
76,679 + GFF6172 0.85 +0.1
76,679 + GFF6172 0.85 +0.8
76,679 + GFF6172 0.85 +0.7
76,679 + GFF6172 0.85 +0.4
76,679 + GFF6172 0.85 -1.2
76,679 + GFF6172 0.85 -0.6
76,679 + GFF6172 0.85 +0.4
76,679 + GFF6172 0.85 -1.2
76,680 - GFF6172 0.85 -0.4
76,680 - GFF6172 0.85 +0.7
76,680 - GFF6172 0.85 +0.9
76,680 - GFF6172 0.85 -0.6
76,680 - GFF6172 0.85 -0.4
76,680 - GFF6172 0.85 +0.5
76,680 - GFF6172 0.85 +0.4
76,680 - GFF6172 0.85 -0.3
76,680 - GFF6172 0.85 -2.0
76,727 + -0.4
76,811 + +0.8
77,038 + GFF6173 0.10 -0.9
77,038 + GFF6173 0.10 -0.4
77,038 + GFF6173 0.10 -0.1
77,038 + GFF6173 0.10 -0.8
77,039 - GFF6173 0.10 +0.4
77,164 + GFF6173 0.15 -0.0
77,164 + GFF6173 0.15 +0.1
77,164 + GFF6173 0.15 -0.3
77,164 + GFF6173 0.15 -0.0
77,164 + GFF6173 0.15 +0.1
77,227 + GFF6173 0.17 +0.2
77,228 - GFF6173 0.17 -2.3
77,228 - GFF6173 0.17 +0.2
77,356 + GFF6173 0.21 +0.6
77,356 + GFF6173 0.21 +0.4
77,356 + GFF6173 0.21 -0.3
77,356 + GFF6173 0.21 -0.9
77,356 + GFF6173 0.21 -0.8
77,357 - GFF6173 0.21 +1.0
77,357 - GFF6173 0.21 +0.5
77,357 - GFF6173 0.21 +0.1
77,357 - GFF6173 0.21 -0.0
77,357 - GFF6173 0.21 -0.2
77,357 - GFF6173 0.21 -0.3
77,357 - GFF6173 0.21 +0.9

Or see this region's nucleotide sequence