Strain Fitness in Variovorax sp. SCN45 around GFF6170

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6167 and GFF6168 are separated by 22 nucleotidesGFF6168 and GFF6169 overlap by 4 nucleotidesGFF6169 and GFF6170 overlap by 4 nucleotidesGFF6170 and GFF6171 overlap by 4 nucleotides GFF6167 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 72,422 to 73,426 GFF6167 GFF6168 - Na(+) H(+) antiporter subunit G, at 73,449 to 73,820 GFF6168 GFF6169 - Na(+) H(+) antiporter subunit F, at 73,817 to 74,095 GFF6169 GFF6170 - Na(+) H(+) antiporter subunit E, at 74,092 to 74,583 GFF6170 GFF6171 - Na(+) H(+) antiporter subunit D, at 74,580 to 76,298 GFF6171 Position (kb) 74 75Strain fitness (log2 ratio) -2 -1 0 1at 73.145 kb on + strand, within GFF6167at 73.145 kb on + strand, within GFF6167at 73.322 kb on + strand, within GFF6167at 73.323 kb on - strand, within GFF6167at 73.361 kb on + strandat 73.362 kb on - strandat 73.424 kb on + strandat 73.424 kb on + strandat 73.424 kb on + strandat 73.424 kb on + strandat 73.424 kb on + strandat 73.424 kb on + strandat 73.424 kb on + strandat 73.424 kb on + strandat 73.424 kb on + strandat 73.424 kb on + strandat 73.424 kb on + strandat 73.425 kb on - strandat 73.425 kb on - strandat 73.425 kb on - strandat 73.637 kb on - strand, within GFF6168at 73.637 kb on - strand, within GFF6168at 73.908 kb on + strand, within GFF6169at 73.908 kb on + strand, within GFF6169at 73.908 kb on + strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.909 kb on - strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.965 kb on + strand, within GFF6169at 73.966 kb on - strand, within GFF6169at 73.966 kb on - strand, within GFF6169at 73.966 kb on - strand, within GFF6169at 73.966 kb on - strand, within GFF6169at 74.294 kb on - strand, within GFF6170at 74.378 kb on + strand, within GFF6170at 74.378 kb on + strand, within GFF6170at 74.379 kb on - strand, within GFF6170at 74.379 kb on - strand, within GFF6170at 74.379 kb on - strand, within GFF6170at 74.379 kb on - strand, within GFF6170at 74.379 kb on - strand, within GFF6170at 74.662 kb on + strandat 74.880 kb on + strand, within GFF6171at 74.880 kb on + strand, within GFF6171at 74.880 kb on + strand, within GFF6171at 74.881 kb on - strand, within GFF6171at 74.881 kb on - strand, within GFF6171at 74.881 kb on - strand, within GFF6171at 75.055 kb on + strand, within GFF6171at 75.235 kb on + strand, within GFF6171at 75.235 kb on + strand, within GFF6171at 75.235 kb on + strand, within GFF6171at 75.235 kb on + strand, within GFF6171at 75.236 kb on - strand, within GFF6171at 75.236 kb on - strand, within GFF6171at 75.472 kb on + strand, within GFF6171at 75.472 kb on + strand, within GFF6171at 75.472 kb on + strand, within GFF6171at 75.472 kb on + strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.473 kb on - strand, within GFF6171at 75.532 kb on + strand, within GFF6171at 75.532 kb on + strand, within GFF6171at 75.532 kb on + strand, within GFF6171

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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73,145 + GFF6167 0.72 -0.4
73,145 + GFF6167 0.72 +0.1
73,322 + GFF6167 0.90 -0.0
73,323 - GFF6167 0.90 -0.4
73,361 + -0.5
73,362 - +0.5
73,424 + -0.1
73,424 + -1.5
73,424 + -0.5
73,424 + -0.2
73,424 + -0.5
73,424 + -0.6
73,424 + -0.4
73,424 + +0.7
73,424 + -0.1
73,424 + -1.1
73,424 + -0.6
73,425 - +0.6
73,425 - -0.8
73,425 - -0.3
73,637 - GFF6168 0.51 -1.5
73,637 - GFF6168 0.51 -0.7
73,908 + GFF6169 0.33 -0.4
73,908 + GFF6169 0.33 -0.0
73,908 + GFF6169 0.33 -2.0
73,909 - GFF6169 0.33 +0.4
73,909 - GFF6169 0.33 -1.7
73,909 - GFF6169 0.33 -1.5
73,909 - GFF6169 0.33 -1.2
73,909 - GFF6169 0.33 -1.2
73,909 - GFF6169 0.33 +0.2
73,965 + GFF6169 0.53 -0.5
73,965 + GFF6169 0.53 -0.7
73,965 + GFF6169 0.53 -1.3
73,965 + GFF6169 0.53 +1.3
73,965 + GFF6169 0.53 -0.8
73,965 + GFF6169 0.53 -0.8
73,965 + GFF6169 0.53 -0.6
73,965 + GFF6169 0.53 +0.3
73,965 + GFF6169 0.53 -1.5
73,966 - GFF6169 0.53 +0.1
73,966 - GFF6169 0.53 -0.8
73,966 - GFF6169 0.53 -2.7
73,966 - GFF6169 0.53 +0.4
74,294 - GFF6170 0.41 +0.8
74,378 + GFF6170 0.58 -0.0
74,378 + GFF6170 0.58 -0.3
74,379 - GFF6170 0.58 +0.3
74,379 - GFF6170 0.58 +1.6
74,379 - GFF6170 0.58 -0.0
74,379 - GFF6170 0.58 -0.3
74,379 - GFF6170 0.58 -0.3
74,662 + +0.3
74,880 + GFF6171 0.17 +0.4
74,880 + GFF6171 0.17 -0.0
74,880 + GFF6171 0.17 -0.2
74,881 - GFF6171 0.18 -0.3
74,881 - GFF6171 0.18 -0.3
74,881 - GFF6171 0.18 -0.4
75,055 + GFF6171 0.28 -0.4
75,235 + GFF6171 0.38 -1.4
75,235 + GFF6171 0.38 -0.5
75,235 + GFF6171 0.38 +0.1
75,235 + GFF6171 0.38 -1.2
75,236 - GFF6171 0.38 +0.6
75,236 - GFF6171 0.38 -0.2
75,472 + GFF6171 0.52 -0.3
75,472 + GFF6171 0.52 -0.9
75,472 + GFF6171 0.52 -0.7
75,472 + GFF6171 0.52 +0.0
75,473 - GFF6171 0.52 -0.8
75,473 - GFF6171 0.52 +0.2
75,473 - GFF6171 0.52 +1.1
75,473 - GFF6171 0.52 +0.7
75,473 - GFF6171 0.52 -1.2
75,532 + GFF6171 0.55 +0.6
75,532 + GFF6171 0.55 +0.6
75,532 + GFF6171 0.55 -2.0

Or see this region's nucleotide sequence