Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5911 and GFF5912 are separated by 11 nucleotides GFF5912 and GFF5913 are separated by 240 nucleotides GFF5913 and GFF5914 overlap by 4 nucleotides
GFF5911 - Probable L-amino-acid oxidase (EC 1.4.3.2), at 126,017 to 127,324
GFF5911
GFF5912 - Two-component transcriptional response regulator, LuxR family, but with unusual receiver domain, at 127,336 to 128,013
GFF5912
GFF5913 - T6SS outer membrane component TssL (ImpK/VasF) / unknown domain, at 128,254 to 129,597
GFF5913
GFF5914 - hypothetical protein, at 129,594 to 130,706
GFF5914
Position (kb) 128
129
130 Strain fitness (log2 ratio) -2
-1
0
1 at 127.649 kb on + strand, within GFF5912 at 127.649 kb on + strand, within GFF5912 at 127.650 kb on - strand, within GFF5912 at 127.703 kb on + strand, within GFF5912 at 127.703 kb on + strand, within GFF5912 at 127.704 kb on - strand, within GFF5912 at 127.704 kb on - strand, within GFF5912 at 127.704 kb on - strand, within GFF5912 at 128.046 kb on + strand at 128.062 kb on + strand at 128.063 kb on - strand at 128.110 kb on - strand at 128.294 kb on - strand at 128.626 kb on + strand, within GFF5913 at 128.663 kb on - strand, within GFF5913 at 128.663 kb on - strand, within GFF5913 at 128.785 kb on + strand, within GFF5913 at 128.786 kb on - strand, within GFF5913 at 128.884 kb on + strand, within GFF5913 at 129.280 kb on + strand, within GFF5913 at 129.280 kb on + strand, within GFF5913 at 129.280 kb on + strand, within GFF5913 at 129.281 kb on - strand, within GFF5913 at 129.295 kb on + strand, within GFF5913 at 129.506 kb on - strand at 130.230 kb on + strand, within GFF5914 at 130.230 kb on + strand, within GFF5914 at 130.230 kb on + strand, within GFF5914 at 130.231 kb on - strand, within GFF5914
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 127,649 + GFF5912 0.46 +0.2 127,649 + GFF5912 0.46 +0.1 127,650 - GFF5912 0.46 -0.3 127,703 + GFF5912 0.54 +0.6 127,703 + GFF5912 0.54 +0.0 127,704 - GFF5912 0.54 -0.5 127,704 - GFF5912 0.54 +0.1 127,704 - GFF5912 0.54 +0.0 128,046 + -0.5 128,062 + -0.4 128,063 - +0.6 128,110 - -0.4 128,294 - -2.6 128,626 + GFF5913 0.28 -0.6 128,663 - GFF5913 0.30 -2.1 128,663 - GFF5913 0.30 -0.4 128,785 + GFF5913 0.40 -0.0 128,786 - GFF5913 0.40 -1.1 128,884 + GFF5913 0.47 +0.7 129,280 + GFF5913 0.76 -0.4 129,280 + GFF5913 0.76 +1.1 129,280 + GFF5913 0.76 -1.2 129,281 - GFF5913 0.76 +0.6 129,295 + GFF5913 0.77 -0.9 129,506 - +0.0 130,230 + GFF5914 0.57 +0.7 130,230 + GFF5914 0.57 +1.1 130,230 + GFF5914 0.57 -1.1 130,231 - GFF5914 0.57 +0.4
Or see this region's nucleotide sequence