Strain Fitness in Variovorax sp. SCN45 around GFF5854

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
33,736	+		GFF5853	0.74	+0.7
33,736	+		GFF5853	0.74	-0.0
33,737	-		GFF5853	0.74	-1.4
33,737	-		GFF5853	0.74	+0.4
33,737	-		GFF5853	0.74	-0.1
33,871	+		GFF5853	0.80	+0.6
33,871	+		GFF5853	0.80	-0.0
33,872	-		GFF5853	0.80	+0.2
33,872	-		GFF5853	0.80	-0.3
33,872	-		GFF5853	0.80	-0.5
33,872	-		GFF5853	0.80	-0.1
33,872	-		GFF5853	0.80	-0.6
34,264	+				-0.8
34,335	+				+0.1
34,335	+				-0.2
34,368	+				+0.6
34,428	+				+2.1
34,429	-				-0.3
34,429	-				-1.8
34,429	-				+0.2
34,429	-				-0.5
34,429	-				+0.4
34,482	+		GFF5854	0.14	-1.1
34,482	+		GFF5854	0.14	+0.2
34,482	+		GFF5854	0.14	-0.8
34,689	+		GFF5854	0.28	+1.1
34,690	-		GFF5854	0.28	+0.7
34,690	-		GFF5854	0.28	+0.1
34,690	-		GFF5854	0.28	-1.2
34,690	-		GFF5854	0.28	+0.4
34,726	-		GFF5854	0.31	-0.8
34,726	-		GFF5854	0.31	-0.1
34,726	-		GFF5854	0.31	-1.2
35,413	-		GFF5854	0.79	-1.1
35,415	+		GFF5854	0.79	+1.4
35,701	+				+0.1
35,701	+				+2.0
35,702	-				+0.1
35,873	+				-0.0
35,873	+				+0.4
35,874	-				+0.1
35,874	-				-0.4
35,907	-				-0.3
36,035	+				+0.1
36,035	+				-0.6
36,035	+				-0.8
36,036	-				+0.7
36,036	-				+0.1
36,335	+				+0.3
36,335	+				-0.3
36,335	+				+0.8
36,335	+				-0.4
36,336	-				+0.7
36,336	-				+0.0
36,371	+				-0.2
36,371	+				+0.4
36,371	+				-0.3
36,371	+				-0.7
36,371	+				+0.4
36,372	-				+0.5
36,372	-				-1.1
36,372	-				+0.7
36,372	-				-0.1
36,416	+				+1.3
36,554	+				+0.3
36,555	-				-0.2
36,555	-				-0.2
36,590	+				-0.2
36,590	+				+0.3
36,590	+				-0.2
36,590	+				-0.3
36,590	+				-0.0
36,590	+				+0.4
36,591	-				-0.2
36,593	+				-1.5
36,593	+				-1.3
36,594	-				+0.9
36,594	-				+0.1
36,594	-				-0.3
36,594	-				-1.0
36,594	-				+0.3
36,594	-				+0.2
36,594	-				-0.1
36,594	-				+0.1