Strain Fitness in Variovorax sp. SCN45 around GFF5655

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
30,718	+		GFF5654	0.42	+0.5
30,718	+		GFF5654	0.42	-0.3
30,718	+		GFF5654	0.42	-0.5
30,719	-		GFF5654	0.42	+0.1
30,719	-		GFF5654	0.42	-0.7
30,719	-		GFF5654	0.42	-0.4
30,838	+		GFF5654	0.51	-0.7
30,838	+		GFF5654	0.51	-0.6
30,838	+		GFF5654	0.51	-0.9
30,839	-		GFF5654	0.51	-0.6
30,839	-		GFF5654	0.51	+0.6
30,839	-		GFF5654	0.51	-0.5
30,839	-		GFF5654	0.51	-1.5
30,895	+		GFF5654	0.55	+0.6
30,895	+		GFF5654	0.55	-1.2
30,895	+		GFF5654	0.55	-0.2
30,895	+		GFF5654	0.55	-0.9
30,895	+		GFF5654	0.55	-0.5
30,896	-		GFF5654	0.55	+0.3
30,896	-		GFF5654	0.55	-0.0
31,641	-				-1.4
31,688	+		GFF5655	0.13	+0.2
31,688	+		GFF5655	0.13	-0.3
31,869	+		GFF5655	0.31	-0.9
31,869	+		GFF5655	0.31	-0.6
31,869	+		GFF5655	0.31	-0.4
31,869	+		GFF5655	0.31	+0.6
31,869	+		GFF5655	0.31	-0.7
31,870	-		GFF5655	0.31	-0.2
31,870	-		GFF5655	0.31	-0.1
31,870	-		GFF5655	0.31	-0.6
31,870	-		GFF5655	0.31	-0.6
31,870	-		GFF5655	0.31	-1.7
31,870	-		GFF5655	0.31	+0.6
32,001	+		GFF5655	0.44	-0.2
32,001	+		GFF5655	0.44	-1.0
32,001	+		GFF5655	0.44	+0.9
32,002	-		GFF5655	0.44	-1.7
32,002	-		GFF5655	0.44	+0.2
32,002	-		GFF5655	0.44	+0.6
32,002	-		GFF5655	0.44	+1.6
32,002	-		GFF5655	0.44	-0.2
32,052	+		GFF5655	0.48	-0.9
32,294	+		GFF5655	0.72	-0.2
32,294	+		GFF5655	0.72	-0.4
32,294	+		GFF5655	0.72	+0.3
32,295	-		GFF5655	0.72	-0.7
32,295	-		GFF5655	0.72	+0.8
32,347	-		GFF5655	0.77	-1.1
32,347	-		GFF5655	0.77	-0.4
32,347	-		GFF5655	0.77	-1.1
32,401	-		GFF5655	0.82	-0.2
32,401	-		GFF5655	0.82	-0.5
32,401	-		GFF5655	0.82	-0.8
32,401	-		GFF5655	0.82	-0.1
32,590	+				+1.1
32,590	+				-1.7
32,591	-				+0.3
32,591	-				+0.1
32,707	+		GFF5656	0.18	+0.6
32,707	+		GFF5656	0.18	+0.2
32,707	+		GFF5656	0.18	-0.2
32,707	+		GFF5656	0.18	-0.2
32,707	+		GFF5656	0.18	-1.0
32,707	+		GFF5656	0.18	+0.1
32,707	+		GFF5656	0.18	-0.0
32,707	+		GFF5656	0.18	-0.8
32,707	+		GFF5656	0.18	+0.8
32,708	-		GFF5656	0.19	-0.3
32,708	-		GFF5656	0.19	+0.6
32,708	-		GFF5656	0.19	-1.1
32,784	+		GFF5656	0.31	-1.7
32,893	+		GFF5656	0.48	-0.7
32,894	-		GFF5656	0.48	+0.9
32,894	-		GFF5656	0.48	-0.5
32,894	-		GFF5656	0.48	+0.1
32,894	-		GFF5656	0.48	-0.3
33,202	+				+0.6
33,202	+				+0.3
33,202	+				+0.3
33,202	+				-0.6
33,203	-				+0.4
33,205	+				-0.4
33,205	+				-0.0
33,205	+				-0.2
33,206	-				-0.3
33,206	-				-0.0
33,206	-				-0.3
33,340	+		GFF5657	0.12	+0.4
33,359	+		GFF5657	0.13	-0.3
33,359	+		GFF5657	0.13	-0.2
33,360	-		GFF5657	0.14	-1.4
33,360	-		GFF5657	0.14	-0.5
33,476	+		GFF5657	0.26	-0.2
33,476	+		GFF5657	0.26	-0.2
33,509	+		GFF5657	0.29	-0.5
33,509	+		GFF5657	0.29	+0.2
33,509	+		GFF5657	0.29	-0.5
33,509	+		GFF5657	0.29	+0.1
33,509	+		GFF5657	0.29	+0.4
33,509	+		GFF5657	0.29	+0.1
33,509	+		GFF5657	0.29	-1.1
33,509	+		GFF5657	0.29	-0.4
33,509	+		GFF5657	0.29	-0.0
33,509	+		GFF5657	0.29	+0.1
33,510	-		GFF5657	0.29	-0.5
33,510	-		GFF5657	0.29	-0.4
33,510	-		GFF5657	0.29	-0.3
33,510	-		GFF5657	0.29	-0.9
33,510	-		GFF5657	0.29	+0.6
33,510	-		GFF5657	0.29	-2.1
33,545	+		GFF5657	0.33	-1.6
33,546	-		GFF5657	0.33	-0.4
33,546	-		GFF5657	0.33	-0.7
33,546	-		GFF5657	0.33	+0.4
33,546	-		GFF5657	0.33	-0.2