Strain Fitness in Variovorax sp. SCN45 around GFF5609

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5608 and GFF5609 are separated by 9 nucleotidesGFF5609 and GFF5610 are separated by 192 nucleotides GFF5608 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.2.8), at 227,461 to 229,575 GFF5608 GFF5609 - Transcriptional regulator, LuxR family, at 229,585 to 230,565 GFF5609 GFF5610 - hypothetical protein, at 230,758 to 232,878 GFF5610 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1 2at 228.634 kb on + strand, within GFF5608at 228.635 kb on - strand, within GFF5608at 228.766 kb on + strand, within GFF5608at 228.766 kb on + strand, within GFF5608at 228.767 kb on - strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.967 kb on + strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 228.968 kb on - strand, within GFF5608at 229.051 kb on + strand, within GFF5608at 229.051 kb on + strand, within GFF5608at 229.051 kb on + strand, within GFF5608at 229.123 kb on + strand, within GFF5608at 229.123 kb on + strand, within GFF5608at 229.123 kb on + strand, within GFF5608at 229.123 kb on + strand, within GFF5608at 229.123 kb on + strand, within GFF5608at 229.123 kb on + strand, within GFF5608at 229.123 kb on + strand, within GFF5608at 229.123 kb on + strand, within GFF5608at 229.123 kb on + strand, within GFF5608at 229.123 kb on + strand, within GFF5608at 229.124 kb on - strand, within GFF5608at 229.124 kb on - strand, within GFF5608at 229.124 kb on - strand, within GFF5608at 229.124 kb on - strand, within GFF5608at 229.124 kb on - strand, within GFF5608at 229.124 kb on - strand, within GFF5608at 229.124 kb on - strand, within GFF5608at 229.144 kb on + strand, within GFF5608at 229.144 kb on + strand, within GFF5608at 229.144 kb on + strand, within GFF5608at 229.144 kb on + strand, within GFF5608at 229.144 kb on + strand, within GFF5608at 229.144 kb on + strand, within GFF5608at 229.144 kb on + strand, within GFF5608at 229.144 kb on + strand, within GFF5608at 229.145 kb on - strand, within GFF5608at 229.145 kb on - strand, within GFF5608at 229.145 kb on - strand, within GFF5608at 229.145 kb on - strand, within GFF5608at 229.178 kb on - strand, within GFF5608at 229.178 kb on - strand, within GFF5608at 229.178 kb on - strand, within GFF5608at 229.178 kb on - strand, within GFF5608at 229.225 kb on + strand, within GFF5608at 229.225 kb on + strand, within GFF5608at 229.225 kb on + strand, within GFF5608at 229.225 kb on - strand, within GFF5608at 229.226 kb on - strand, within GFF5608at 229.226 kb on - strand, within GFF5608at 229.226 kb on - strand, within GFF5608at 229.226 kb on - strand, within GFF5608at 229.226 kb on - strand, within GFF5608at 229.274 kb on - strand, within GFF5608at 229.274 kb on - strand, within GFF5608at 229.306 kb on + strand, within GFF5608at 229.307 kb on - strand, within GFF5608at 229.307 kb on - strand, within GFF5608at 229.307 kb on - strand, within GFF5608at 229.342 kb on + strand, within GFF5608at 229.342 kb on + strand, within GFF5608at 229.342 kb on + strand, within GFF5608at 229.342 kb on + strand, within GFF5608at 229.342 kb on + strand, within GFF5608at 229.342 kb on + strand, within GFF5608at 229.343 kb on - strand, within GFF5608at 229.414 kb on + strandat 229.414 kb on + strandat 229.415 kb on - strandat 229.429 kb on + strandat 229.429 kb on + strandat 229.430 kb on - strandat 229.430 kb on - strandat 229.430 kb on - strandat 229.573 kb on + strandat 229.573 kb on + strandat 229.573 kb on + strandat 229.574 kb on - strandat 229.574 kb on - strandat 229.574 kb on - strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.647 kb on - strandat 229.647 kb on - strandat 229.851 kb on - strand, within GFF5609at 229.962 kb on - strand, within GFF5609at 230.220 kb on - strand, within GFF5609at 230.339 kb on + strand, within GFF5609at 230.339 kb on + strand, within GFF5609at 230.339 kb on + strand, within GFF5609at 230.339 kb on + strand, within GFF5609at 230.340 kb on - strand, within GFF5609at 230.340 kb on - strand, within GFF5609at 230.340 kb on - strand, within GFF5609at 230.340 kb on - strand, within GFF5609at 230.514 kb on - strandat 230.514 kb on - strandat 230.640 kb on + strandat 230.703 kb on + strandat 230.704 kb on - strandat 230.704 kb on - strandat 230.704 kb on - strandat 230.704 kb on - strandat 230.704 kb on - strandat 230.704 kb on - strandat 230.742 kb on + strandat 230.743 kb on - strandat 230.743 kb on - strandat 230.757 kb on + strandat 230.757 kb on + strandat 230.757 kb on + strandat 230.757 kb on + strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 231.031 kb on + strand, within GFF5610at 231.031 kb on + strand, within GFF5610at 231.031 kb on + strand, within GFF5610at 231.031 kb on + strand, within GFF5610at 231.031 kb on + strand, within GFF5610at 231.031 kb on + strand, within GFF5610at 231.032 kb on - strand, within GFF5610at 231.032 kb on - strand, within GFF5610at 231.032 kb on - strand, within GFF5610at 231.032 kb on - strand, within GFF5610at 231.032 kb on - strand, within GFF5610at 231.103 kb on + strand, within GFF5610at 231.103 kb on + strand, within GFF5610at 231.103 kb on + strand, within GFF5610

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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228,634 + GFF5608 0.55 +0.2
228,635 - GFF5608 0.56 +0.0
228,766 + GFF5608 0.62 -0.4
228,766 + GFF5608 0.62 -0.8
228,767 - GFF5608 0.62 -0.4
228,967 + GFF5608 0.71 -0.3
228,967 + GFF5608 0.71 -0.0
228,967 + GFF5608 0.71 -0.8
228,967 + GFF5608 0.71 -0.2
228,967 + GFF5608 0.71 +0.0
228,967 + GFF5608 0.71 -1.4
228,967 + GFF5608 0.71 +1.8
228,967 + GFF5608 0.71 +1.4
228,967 + GFF5608 0.71 -0.7
228,967 + GFF5608 0.71 -0.9
228,967 + GFF5608 0.71 +0.8
228,967 + GFF5608 0.71 +1.0
228,967 + GFF5608 0.71 -0.5
228,968 - GFF5608 0.71 +0.4
228,968 - GFF5608 0.71 +0.3
228,968 - GFF5608 0.71 -0.3
228,968 - GFF5608 0.71 +0.0
228,968 - GFF5608 0.71 +0.2
228,968 - GFF5608 0.71 -0.2
228,968 - GFF5608 0.71 +0.2
228,968 - GFF5608 0.71 -0.5
228,968 - GFF5608 0.71 +0.4
228,968 - GFF5608 0.71 -0.1
228,968 - GFF5608 0.71 +0.0
228,968 - GFF5608 0.71 -0.5
229,051 + GFF5608 0.75 -0.6
229,051 + GFF5608 0.75 +0.5
229,051 + GFF5608 0.75 -0.4
229,123 + GFF5608 0.79 +1.8
229,123 + GFF5608 0.79 +0.0
229,123 + GFF5608 0.79 -0.3
229,123 + GFF5608 0.79 -2.3
229,123 + GFF5608 0.79 +0.1
229,123 + GFF5608 0.79 -0.1
229,123 + GFF5608 0.79 -0.0
229,123 + GFF5608 0.79 +0.0
229,123 + GFF5608 0.79 -1.1
229,123 + GFF5608 0.79 -0.3
229,124 - GFF5608 0.79 +0.3
229,124 - GFF5608 0.79 +0.2
229,124 - GFF5608 0.79 +1.0
229,124 - GFF5608 0.79 -0.5
229,124 - GFF5608 0.79 -0.2
229,124 - GFF5608 0.79 -0.8
229,124 - GFF5608 0.79 +0.7
229,144 + GFF5608 0.80 -0.3
229,144 + GFF5608 0.80 -0.7
229,144 + GFF5608 0.80 -0.7
229,144 + GFF5608 0.80 +0.8
229,144 + GFF5608 0.80 -0.8
229,144 + GFF5608 0.80 -0.7
229,144 + GFF5608 0.80 -0.9
229,144 + GFF5608 0.80 -0.0
229,145 - GFF5608 0.80 -0.5
229,145 - GFF5608 0.80 -1.0
229,145 - GFF5608 0.80 -0.5
229,145 - GFF5608 0.80 +0.8
229,178 - GFF5608 0.81 -0.5
229,178 - GFF5608 0.81 -0.3
229,178 - GFF5608 0.81 -0.3
229,178 - GFF5608 0.81 +0.5
229,225 + GFF5608 0.83 -0.3
229,225 + GFF5608 0.83 -0.6
229,225 + GFF5608 0.83 +1.2
229,225 - GFF5608 0.83 +0.3
229,226 - GFF5608 0.83 -0.2
229,226 - GFF5608 0.83 +0.3
229,226 - GFF5608 0.83 +0.4
229,226 - GFF5608 0.83 -0.0
229,226 - GFF5608 0.83 +0.2
229,274 - GFF5608 0.86 +0.5
229,274 - GFF5608 0.86 -0.1
229,306 + GFF5608 0.87 +0.7
229,307 - GFF5608 0.87 -0.7
229,307 - GFF5608 0.87 -0.5
229,307 - GFF5608 0.87 +0.3
229,342 + GFF5608 0.89 -0.4
229,342 + GFF5608 0.89 +1.3
229,342 + GFF5608 0.89 +1.1
229,342 + GFF5608 0.89 +1.5
229,342 + GFF5608 0.89 +0.1
229,342 + GFF5608 0.89 -0.5
229,343 - GFF5608 0.89 -0.5
229,414 + +0.2
229,414 + +0.1
229,415 - +0.2
229,429 + +0.5
229,429 + -0.3
229,430 - +0.5
229,430 - -0.7
229,430 - +0.0
229,573 + -0.0
229,573 + +1.2
229,573 + +0.1
229,574 - -0.4
229,574 - +0.2
229,574 - +1.2
229,646 + +0.6
229,646 + +1.0
229,647 - -0.2
229,647 - +0.1
229,851 - GFF5609 0.27 -1.2
229,962 - GFF5609 0.38 -0.2
230,220 - GFF5609 0.65 -0.6
230,339 + GFF5609 0.77 +0.0
230,339 + GFF5609 0.77 -0.7
230,339 + GFF5609 0.77 -0.4
230,339 + GFF5609 0.77 -0.5
230,340 - GFF5609 0.77 -0.3
230,340 - GFF5609 0.77 +1.0
230,340 - GFF5609 0.77 +0.1
230,340 - GFF5609 0.77 -1.0
230,514 - -0.0
230,514 - -0.6
230,640 + -0.1
230,703 + -2.5
230,704 - -1.5
230,704 - -0.3
230,704 - +0.9
230,704 - -0.4
230,704 - -0.6
230,704 - -0.1
230,742 + +0.9
230,743 - +0.2
230,743 - +0.1
230,757 + +1.9
230,757 + -0.8
230,757 + +0.6
230,757 + -0.0
230,758 - +0.3
230,758 - +0.6
230,758 - +1.2
230,758 - +0.2
230,758 - +0.6
230,758 - +0.2
230,758 - -0.5
230,758 - -0.9
230,758 - +0.8
231,031 + GFF5610 0.13 -0.7
231,031 + GFF5610 0.13 +0.1
231,031 + GFF5610 0.13 -0.1
231,031 + GFF5610 0.13 +0.2
231,031 + GFF5610 0.13 -0.7
231,031 + GFF5610 0.13 -0.1
231,032 - GFF5610 0.13 -0.7
231,032 - GFF5610 0.13 +0.2
231,032 - GFF5610 0.13 -1.0
231,032 - GFF5610 0.13 +0.5
231,032 - GFF5610 0.13 -0.1
231,103 + GFF5610 0.16 +0.2
231,103 + GFF5610 0.16 -0.5
231,103 + GFF5610 0.16 -0.0

Or see this region's nucleotide sequence