Strain Fitness in Variovorax sp. SCN45 around GFF5375

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5374 and GFF5375 are separated by 21 nucleotidesGFF5375 and GFF5376 are separated by 31 nucleotidesGFF5376 and GFF5377 are separated by 71 nucleotides GFF5374 - Glutamine amidotransferase, class I, at 539 to 1,483 GFF5374 GFF5375 - Acyl-CoA dehydrogenase, at 1,505 to 3,145 GFF5375 GFF5376 - hypothetical protein, at 3,177 to 4,010 GFF5376 GFF5377 - Transcriptional regulator, AcrR family, at 4,082 to 4,717 GFF5377 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2 3at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.800 kb on + strand, within GFF5374at 0.800 kb on + strand, within GFF5374at 0.801 kb on - strand, within GFF5374at 0.801 kb on - strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.914 kb on + strand, within GFF5374at 0.914 kb on + strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.017 kb on - strand, within GFF5374at 1.017 kb on - strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.927 kb on - strand, within GFF5375at 1.927 kb on - strand, within GFF5375at 1.927 kb on - strand, within GFF5375at 1.927 kb on - strand, within GFF5375at 1.927 kb on - strand, within GFF5375at 2.178 kb on + strand, within GFF5375at 2.178 kb on + strand, within GFF5375at 2.178 kb on + strand, within GFF5375at 2.178 kb on + strand, within GFF5375at 2.178 kb on + strand, within GFF5375at 2.179 kb on - strand, within GFF5375at 2.179 kb on - strand, within GFF5375at 2.694 kb on + strand, within GFF5375at 2.694 kb on + strand, within GFF5375at 2.694 kb on + strand, within GFF5375at 2.695 kb on - strand, within GFF5375at 2.695 kb on - strand, within GFF5375at 2.695 kb on - strand, within GFF5375at 2.695 kb on - strand, within GFF5375at 2.695 kb on - strand, within GFF5375at 2.784 kb on + strand, within GFF5375at 2.784 kb on + strand, within GFF5375at 2.784 kb on + strand, within GFF5375at 2.784 kb on + strand, within GFF5375at 2.784 kb on + strand, within GFF5375at 2.784 kb on + strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.785 kb on - strand, within GFF5375at 2.800 kb on - strand, within GFF5375at 2.800 kb on - strand, within GFF5375at 2.997 kb on + strandat 2.997 kb on + strandat 2.998 kb on - strandat 3.084 kb on + strandat 3.084 kb on + strandat 3.084 kb on + strandat 3.085 kb on - strandat 3.085 kb on - strandat 3.085 kb on - strandat 3.085 kb on - strandat 3.085 kb on - strandat 3.085 kb on - strandat 3.085 kb on - strandat 3.085 kb on - strandat 3.085 kb on - strandat 3.085 kb on - strandat 3.093 kb on + strandat 3.093 kb on + strandat 3.093 kb on + strandat 3.093 kb on + strandat 3.093 kb on + strandat 3.093 kb on + strandat 3.093 kb on + strandat 3.093 kb on + strandat 3.093 kb on + strandat 3.093 kb on + strandat 3.094 kb on - strandat 3.094 kb on - strandat 3.094 kb on - strandat 3.094 kb on - strandat 3.094 kb on - strandat 3.094 kb on - strandat 3.094 kb on - strandat 3.094 kb on - strandat 3.094 kb on - strandat 3.245 kb on - strandat 3.245 kb on - strandat 3.547 kb on + strand, within GFF5376at 3.547 kb on + strand, within GFF5376at 3.548 kb on - strand, within GFF5376at 3.548 kb on - strand, within GFF5376at 3.548 kb on - strand, within GFF5376at 3.639 kb on + strand, within GFF5376at 3.640 kb on - strand, within GFF5376at 3.640 kb on - strand, within GFF5376at 3.964 kb on + strandat 3.964 kb on + strandat 3.964 kb on + strandat 3.965 kb on - strandat 3.965 kb on - strandat 3.965 kb on - strandat 3.965 kb on - strandat 3.965 kb on - strandat 3.965 kb on - strandat 4.043 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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692 + GFF5374 0.16 -0.2
692 + GFF5374 0.16 -1.1
692 + GFF5374 0.16 -0.1
692 + GFF5374 0.16 -1.4
692 + GFF5374 0.16 -0.2
692 + GFF5374 0.16 -0.4
692 + GFF5374 0.16 +1.0
692 + GFF5374 0.16 +0.7
692 + GFF5374 0.16 +0.0
693 - GFF5374 0.16 +0.5
693 - GFF5374 0.16 +0.1
693 - GFF5374 0.16 -1.0
693 - GFF5374 0.16 +0.1
800 + GFF5374 0.28 -1.2
800 + GFF5374 0.28 +0.0
801 - GFF5374 0.28 +0.8
801 - GFF5374 0.28 +0.8
860 + GFF5374 0.34 -1.4
860 + GFF5374 0.34 -0.6
860 + GFF5374 0.34 +0.2
860 + GFF5374 0.34 +0.8
861 - GFF5374 0.34 -0.1
861 - GFF5374 0.34 +0.8
861 - GFF5374 0.34 -1.5
861 - GFF5374 0.34 -0.7
861 - GFF5374 0.34 +0.8
861 - GFF5374 0.34 -0.4
861 - GFF5374 0.34 +0.2
914 + GFF5374 0.40 -1.8
914 + GFF5374 0.40 -0.4
915 - GFF5374 0.40 -1.0
915 - GFF5374 0.40 -0.7
915 - GFF5374 0.40 -0.3
915 - GFF5374 0.40 +0.2
915 - GFF5374 0.40 +0.2
1,016 + GFF5374 0.50 +0.6
1,016 + GFF5374 0.50 -2.1
1,016 + GFF5374 0.50 -0.3
1,016 + GFF5374 0.50 +0.2
1,016 + GFF5374 0.50 -0.4
1,016 + GFF5374 0.50 +0.6
1,017 - GFF5374 0.51 -0.4
1,017 - GFF5374 0.51 -0.1
1,079 + GFF5374 0.57 +0.2
1,079 + GFF5374 0.57 +0.8
1,079 + GFF5374 0.57 +0.5
1,079 + GFF5374 0.57 -0.9
1,079 + GFF5374 0.57 -0.3
1,079 + GFF5374 0.57 +0.2
1,079 + GFF5374 0.57 +0.2
1,079 + GFF5374 0.57 -0.4
1,080 - GFF5374 0.57 -1.7
1,080 - GFF5374 0.57 -0.7
1,080 - GFF5374 0.57 -0.1
1,080 - GFF5374 0.57 -0.6
1,080 - GFF5374 0.57 -0.3
1,080 - GFF5374 0.57 -0.8
1,137 - GFF5374 0.63 -0.2
1,137 - GFF5374 0.63 -0.3
1,137 - GFF5374 0.63 -1.5
1,137 - GFF5374 0.63 -1.5
1,280 + GFF5374 0.78 -0.5
1,280 + GFF5374 0.78 -1.1
1,280 + GFF5374 0.78 +0.2
1,280 + GFF5374 0.78 -0.0
1,280 + GFF5374 0.78 -0.1
1,280 + GFF5374 0.78 -0.3
1,280 + GFF5374 0.78 +1.3
1,280 + GFF5374 0.78 -0.4
1,280 + GFF5374 0.78 +1.0
1,280 + GFF5374 0.78 +1.2
1,281 - GFF5374 0.79 -0.0
1,281 - GFF5374 0.79 +0.6
1,281 - GFF5374 0.79 +0.2
1,281 - GFF5374 0.79 -1.3
1,281 - GFF5374 0.79 +1.1
1,319 + GFF5374 0.83 -0.9
1,319 + GFF5374 0.83 -0.5
1,319 + GFF5374 0.83 +0.5
1,319 + GFF5374 0.83 -0.8
1,319 + GFF5374 0.83 -0.2
1,320 - GFF5374 0.83 +0.5
1,320 - GFF5374 0.83 -0.9
1,320 - GFF5374 0.83 -0.6
1,320 - GFF5374 0.83 -0.4
1,320 - GFF5374 0.83 +0.0
1,926 + GFF5375 0.26 +0.1
1,926 + GFF5375 0.26 +0.3
1,926 + GFF5375 0.26 -0.2
1,926 + GFF5375 0.26 +1.5
1,926 + GFF5375 0.26 -1.2
1,926 + GFF5375 0.26 -2.1
1,926 + GFF5375 0.26 -0.5
1,927 - GFF5375 0.26 +0.5
1,927 - GFF5375 0.26 +0.6
1,927 - GFF5375 0.26 +1.0
1,927 - GFF5375 0.26 +0.4
1,927 - GFF5375 0.26 -0.5
2,178 + GFF5375 0.41 +1.4
2,178 + GFF5375 0.41 -0.1
2,178 + GFF5375 0.41 +0.3
2,178 + GFF5375 0.41 +0.1
2,178 + GFF5375 0.41 -0.4
2,179 - GFF5375 0.41 +0.3
2,179 - GFF5375 0.41 -0.2
2,694 + GFF5375 0.72 -0.0
2,694 + GFF5375 0.72 +0.1
2,694 + GFF5375 0.72 +0.9
2,695 - GFF5375 0.73 -0.5
2,695 - GFF5375 0.73 +2.8
2,695 - GFF5375 0.73 -0.1
2,695 - GFF5375 0.73 +0.3
2,695 - GFF5375 0.73 -1.0
2,784 + GFF5375 0.78 -2.6
2,784 + GFF5375 0.78 -0.5
2,784 + GFF5375 0.78 +0.3
2,784 + GFF5375 0.78 -0.5
2,784 + GFF5375 0.78 -0.3
2,784 + GFF5375 0.78 +1.2
2,785 - GFF5375 0.78 +0.3
2,785 - GFF5375 0.78 +0.2
2,785 - GFF5375 0.78 +0.6
2,785 - GFF5375 0.78 +0.7
2,785 - GFF5375 0.78 -0.5
2,785 - GFF5375 0.78 -0.1
2,785 - GFF5375 0.78 +0.0
2,785 - GFF5375 0.78 -1.0
2,785 - GFF5375 0.78 -0.2
2,785 - GFF5375 0.78 -2.5
2,785 - GFF5375 0.78 +1.0
2,785 - GFF5375 0.78 +0.9
2,800 - GFF5375 0.79 -1.3
2,800 - GFF5375 0.79 +1.0
2,997 + +0.0
2,997 + -0.1
2,998 - -0.8
3,084 + -1.3
3,084 + +0.1
3,084 + -0.4
3,085 - +0.1
3,085 - -0.2
3,085 - -0.6
3,085 - -0.8
3,085 - -0.5
3,085 - -1.0
3,085 - +0.4
3,085 - -0.5
3,085 - -0.1
3,085 - +0.0
3,093 + +0.3
3,093 + +0.5
3,093 + +1.0
3,093 + +0.4
3,093 + +2.2
3,093 + +0.5
3,093 + -0.4
3,093 + -0.4
3,093 + -0.7
3,093 + -0.9
3,094 - -0.8
3,094 - +0.3
3,094 - -1.1
3,094 - -0.2
3,094 - -0.5
3,094 - -1.4
3,094 - +0.6
3,094 - +0.4
3,094 - -2.7
3,245 - +0.1
3,245 - -0.6
3,547 + GFF5376 0.44 +0.7
3,547 + GFF5376 0.44 +1.1
3,548 - GFF5376 0.44 -2.2
3,548 - GFF5376 0.44 -1.2
3,548 - GFF5376 0.44 -1.0
3,639 + GFF5376 0.55 -0.6
3,640 - GFF5376 0.56 +2.1
3,640 - GFF5376 0.56 -1.1
3,964 + -1.4
3,964 + -0.3
3,964 + -0.6
3,965 - +0.3
3,965 - -0.7
3,965 - -0.3
3,965 - -0.3
3,965 - -0.1
3,965 - +0.6
4,043 - -0.2

Or see this region's nucleotide sequence